Wall clock time and date at job start Tue Mar 31 2020 21:34:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47066 * 2 1 4 4 C 1.53001 * 109.47376 * 119.99950 * 2 1 3 5 5 N 1.46492 * 109.47199 * 175.00049 * 4 2 1 6 6 N 1.40119 * 126.16843 * 94.99994 * 5 4 2 7 7 H 0.97001 * 125.90754 * 359.97438 * 6 5 4 8 8 C 1.36604 * 108.18331 * 180.25066 * 6 5 4 9 9 C 1.50700 * 125.77597 * 179.75428 * 8 6 5 10 10 C 1.50698 * 109.47059 * 275.00108 * 9 8 6 11 11 O 1.21273 * 120.00158 * 359.97438 * 10 9 8 12 12 N 1.34776 * 119.99807 * 180.02562 * 10 9 8 13 13 C 1.46501 * 120.00011 * 179.97438 * 12 10 9 14 14 C 1.52998 * 109.47266 * 179.97438 * 13 12 10 15 15 C 1.53002 * 109.47299 * 179.97438 * 14 13 12 16 16 N 1.46493 * 109.47100 * 180.02562 * 15 14 13 17 17 C 1.46509 * 120.00025 * 270.00100 * 16 15 14 18 18 C 1.36932 * 120.00170 * 90.00362 * 16 15 14 19 19 H 1.07998 * 119.99944 * 22.34609 * 18 16 15 20 20 C 1.38812 * 120.00257 * 202.34288 * 18 16 15 21 21 N 1.31619 * 120.00034 * 11.34562 * 20 18 16 22 22 Si 1.86794 * 120.00236 * 191.34757 * 20 18 16 23 23 H 1.48495 * 109.47530 * 59.99726 * 22 20 18 24 24 H 1.48502 * 109.47386 * 179.97438 * 22 20 18 25 25 H 1.48506 * 109.47170 * 299.99719 * 22 20 18 26 26 C 1.34818 * 108.45041 * 359.62229 * 8 6 5 27 27 C 1.34869 * 126.16437 * 275.02651 * 5 4 2 28 28 O 1.21782 * 126.19673 * 359.95509 * 27 5 4 29 29 H 1.09001 * 109.47164 * 300.00150 * 1 2 3 30 30 H 1.08999 * 109.47687 * 59.99970 * 1 2 3 31 31 H 1.09001 * 109.46863 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.47069 * 240.00362 * 2 1 3 33 33 H 1.09005 * 109.47336 * 300.00002 * 3 2 1 34 34 H 1.09001 * 109.47251 * 59.99903 * 3 2 1 35 35 H 1.08997 * 109.47091 * 180.02562 * 3 2 1 36 36 H 1.09000 * 109.46963 * 54.99670 * 4 2 1 37 37 H 1.08995 * 109.46651 * 295.00288 * 4 2 1 38 38 H 1.09011 * 109.46715 * 34.99850 * 9 8 6 39 39 H 1.09003 * 109.47169 * 154.99433 * 9 8 6 40 40 H 0.96996 * 120.00290 * 359.97438 * 12 10 9 41 41 H 1.08997 * 109.46897 * 299.99861 * 13 12 10 42 42 H 1.08998 * 109.46925 * 59.99625 * 13 12 10 43 43 H 1.08997 * 109.47560 * 300.00081 * 14 13 12 44 44 H 1.09009 * 109.46529 * 60.00030 * 14 13 12 45 45 H 1.08997 * 109.47156 * 300.00666 * 15 14 13 46 46 H 1.08998 * 109.46633 * 60.00409 * 15 14 13 47 47 H 1.08999 * 109.46934 * 94.20902 * 17 16 15 48 48 H 1.08997 * 109.47117 * 214.21101 * 17 16 15 49 49 H 1.09005 * 109.46946 * 334.21380 * 17 16 15 50 50 H 0.96999 * 120.00597 * 179.97438 * 21 20 18 51 51 H 1.07997 * 125.96112 * 180.13790 * 26 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 3.5000 -0.8263 1.1905 6 7 4.4169 0.0561 1.7771 7 1 4.1950 0.8461 2.2944 8 6 5.6772 -0.3851 1.4892 9 6 6.9616 0.2733 1.9225 10 6 7.3263 1.3573 0.9412 11 8 6.6138 1.5735 -0.0160 12 7 8.4450 2.0858 1.1268 13 6 8.7999 3.1392 0.1725 14 6 10.1038 3.8078 0.6125 15 6 10.4748 4.9075 -0.3845 16 7 11.7236 5.5472 0.0365 17 6 11.6871 6.7085 0.9291 18 6 12.9250 5.0600 -0.4043 19 1 12.9697 4.4701 -1.3078 20 6 14.0854 5.3243 0.3101 21 7 14.0112 5.8450 1.5166 22 14 15.7523 4.9409 -0.4407 23 1 15.9197 5.7159 -1.6963 24 1 16.8242 5.3136 0.5170 25 1 15.8382 3.4889 -0.7401 26 6 5.5776 -1.5110 0.7543 27 6 4.2040 -1.7897 0.5617 28 8 3.7411 -2.7295 -0.0591 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8901 33 1 1.6766 1.9564 -0.8900 34 1 1.6766 1.9564 0.8900 35 1 3.1299 1.4425 -0.0005 36 1 1.6054 -1.7198 1.2952 37 1 1.7516 -0.1583 2.1369 38 1 6.8303 0.7091 2.9131 39 1 7.7580 -0.4702 1.9554 40 1 9.0151 1.9126 1.8922 41 1 8.9309 2.7031 -0.8178 42 1 8.0037 3.8829 0.1396 43 1 9.9724 4.2439 1.6027 44 1 10.9001 3.0641 0.6456 45 1 10.6062 4.4711 -1.3746 46 1 9.6785 5.6511 -0.4180 47 1 11.7987 6.3768 1.9614 48 1 12.5013 7.3873 0.6755 49 1 10.7341 7.2250 0.8145 50 1 14.8221 6.0294 2.0161 51 1 6.4025 -2.0959 0.3752 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001316833075.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:34:55 Heat of formation + Delta-G solvation = 12.893059 kcal Electronic energy + Delta-G solvation = -28846.155527 eV Core-core repulsion = 24783.356583 eV Total energy + Delta-G solvation = -4062.798944 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.84181 -39.72269 -37.17044 -36.85599 -36.29026 -34.82584 -33.29087 -32.07290 -30.53685 -30.12678 -29.42189 -27.56477 -26.30532 -25.90301 -25.05383 -22.21681 -21.54817 -21.35238 -20.68104 -20.35886 -19.97570 -18.39750 -17.26415 -16.80828 -16.15387 -16.10001 -15.99891 -15.62357 -15.35288 -14.86231 -14.75314 -14.29934 -14.23572 -13.84830 -13.82307 -13.60825 -13.38802 -13.19215 -13.07947 -12.74349 -12.69764 -12.54473 -12.38337 -12.35515 -11.74308 -11.66314 -11.40783 -11.36265 -11.17874 -11.12589 -10.86110 -10.77745 -10.52740 -10.17225 -10.11021 -9.93594 -9.88446 -9.80806 -9.38482 -9.06742 -8.58404 -8.04313 -6.81178 -5.76588 -3.22405 1.28798 1.47221 2.45895 3.01658 3.29810 3.36311 3.41672 3.42905 3.52268 4.06358 4.27260 4.37303 4.46785 4.57203 4.62365 4.66292 4.78793 4.98086 5.02716 5.19371 5.20050 5.20933 5.26325 5.41203 5.42943 5.44713 5.50019 5.63129 5.68388 5.72421 5.77846 5.87898 5.89580 5.91408 6.06526 6.13987 6.16725 6.38024 6.49440 6.71335 6.76770 6.94652 6.95683 7.24916 7.34860 7.41777 7.68334 7.77270 8.08170 8.18333 8.36403 9.20348 9.83516 10.32100 11.28543 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.022142 B = 0.001732 C = 0.001668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1264.266519 B =16162.173114 C =16784.846088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.119 4.119 3 C -0.150 4.150 4 C 0.140 3.860 5 N -0.413 5.413 6 N -0.489 5.489 7 H 0.437 0.563 8 C 0.211 3.789 9 C -0.091 4.091 10 C 0.510 3.490 11 O -0.532 6.532 12 N -0.722 5.722 13 C 0.120 3.880 14 C -0.150 4.150 15 C 0.156 3.844 16 N -0.602 5.602 17 C 0.164 3.836 18 C -0.255 4.255 19 H 0.068 0.932 20 C 0.001 3.999 21 N -0.910 5.910 22 Si 0.905 3.095 23 H -0.284 1.284 24 H -0.291 1.291 25 H -0.283 1.283 26 C -0.333 4.333 27 C 0.535 3.465 28 O -0.558 6.558 29 H 0.056 0.944 30 H 0.061 0.939 31 H 0.059 0.941 32 H 0.081 0.919 33 H 0.059 0.941 34 H 0.052 0.948 35 H 0.061 0.939 36 H 0.100 0.900 37 H 0.084 0.916 38 H 0.113 0.887 39 H 0.131 0.869 40 H 0.403 0.597 41 H 0.066 0.934 42 H 0.062 0.938 43 H 0.060 0.940 44 H 0.069 0.931 45 H 0.046 0.954 46 H 0.038 0.962 47 H 0.027 0.973 48 H 0.044 0.956 49 H -0.004 1.004 50 H 0.253 0.747 51 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.151 -9.917 6.007 25.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.138 4.138 3 C -0.208 4.208 4 C 0.019 3.981 5 N -0.236 5.236 6 N -0.210 5.210 7 H 0.282 0.718 8 C 0.093 3.907 9 C -0.133 4.133 10 C 0.294 3.706 11 O -0.409 6.409 12 N -0.374 5.374 13 C -0.004 4.004 14 C -0.191 4.191 15 C 0.028 3.972 16 N -0.325 5.325 17 C 0.019 3.981 18 C -0.384 4.384 19 H 0.086 0.914 20 C -0.197 4.197 21 N -0.555 5.555 22 Si 0.735 3.265 23 H -0.211 1.211 24 H -0.216 1.216 25 H -0.209 1.209 26 C -0.364 4.364 27 C 0.333 3.667 28 O -0.437 6.437 29 H 0.075 0.925 30 H 0.080 0.920 31 H 0.078 0.922 32 H 0.100 0.900 33 H 0.078 0.922 34 H 0.071 0.929 35 H 0.080 0.920 36 H 0.118 0.882 37 H 0.102 0.898 38 H 0.131 0.869 39 H 0.149 0.851 40 H 0.237 0.763 41 H 0.084 0.916 42 H 0.080 0.920 43 H 0.078 0.922 44 H 0.088 0.912 45 H 0.064 0.936 46 H 0.057 0.943 47 H 0.046 0.954 48 H 0.063 0.937 49 H 0.014 0.986 50 H 0.063 0.937 51 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -24.064 -10.146 5.103 26.609 hybrid contribution 1.238 0.238 0.465 1.343 sum -22.826 -9.908 5.568 25.499 Atomic orbital electron populations 1.21762 0.93901 1.02203 1.02291 1.21611 0.96316 0.97082 0.98826 1.21873 1.01898 0.95124 1.01866 1.21811 0.74694 1.02847 0.98762 1.48480 1.02268 1.21702 1.51113 1.43798 0.99728 1.24847 1.52649 0.71768 1.20024 0.84237 0.92843 0.93639 1.20542 0.93917 0.98667 1.00154 1.20202 0.81556 0.82433 0.86420 1.90776 1.50928 1.68413 1.30743 1.46142 1.25043 1.36657 1.29512 1.21541 0.97854 0.88674 0.92284 1.22563 0.94322 1.00428 1.01786 1.20713 0.88699 0.92484 0.95325 1.43968 1.01051 1.31067 1.56387 1.20800 0.95195 0.88091 0.94002 1.19186 0.84336 1.30435 1.04461 0.91397 1.25028 0.98378 1.00927 0.95383 1.70050 1.27049 1.48294 1.10131 0.86326 0.83718 0.78190 0.78245 1.21066 1.21642 1.20927 1.21687 0.97519 1.03353 1.13889 1.16967 0.87761 0.81728 0.80202 1.90851 1.77012 1.31126 1.44746 0.92493 0.91953 0.92223 0.90026 0.92220 0.92941 0.92010 0.88217 0.89797 0.86862 0.85060 0.76294 0.91612 0.91953 0.92171 0.91198 0.93605 0.94337 0.95447 0.93692 0.98562 0.93718 0.82302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.82 9.19 37.16 0.34 -0.48 16 2 C -0.12 -0.93 3.13 -90.62 -0.28 -1.21 16 3 C -0.15 -1.19 9.08 37.16 0.34 -0.85 16 4 C 0.14 1.04 5.75 -4.05 -0.02 1.02 16 5 N -0.41 -4.14 3.14 -63.24 -0.20 -4.34 16 6 N -0.49 -3.84 6.72 33.67 0.23 -3.62 16 7 H 0.44 2.17 8.96 -182.58 -1.64 0.53 16 8 C 0.21 1.87 5.70 -81.68 -0.47 1.40 16 9 C -0.09 -0.56 6.23 -29.04 -0.18 -0.74 16 10 C 0.51 5.34 7.82 -10.99 -0.09 5.25 16 11 O -0.53 -7.94 16.03 5.56 0.09 -7.85 16 12 N -0.72 -7.47 5.56 -60.30 -0.33 -7.80 16 13 C 0.12 1.59 5.67 -4.04 -0.02 1.56 16 14 C -0.15 -2.41 5.65 -26.73 -0.15 -2.56 16 15 C 0.16 2.98 5.71 -4.04 -0.02 2.96 16 16 N -0.60 -14.57 2.93 -181.12 -0.53 -15.10 16 17 C 0.16 3.91 9.01 59.85 0.54 4.44 16 18 C -0.25 -6.78 9.67 -15.06 -0.15 -6.92 16 19 H 0.07 1.77 7.84 -52.49 -0.41 1.36 16 20 C 0.00 0.02 5.13 -17.43 -0.09 -0.07 16 21 N -0.91 -25.73 10.58 55.49 0.59 -25.14 16 22 Si 0.91 21.36 29.57 -169.99 -5.03 16.33 16 23 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 24 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 25 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 26 C -0.33 -3.90 10.73 -39.56 -0.42 -4.33 16 27 C 0.54 7.40 7.95 -14.98 -0.12 7.28 16 28 O -0.56 -9.75 17.92 5.12 0.09 -9.66 16 29 H 0.06 0.26 8.14 -51.93 -0.42 -0.17 16 30 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 34 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.06 0.63 7.22 -51.93 -0.37 0.25 16 36 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 38 H 0.11 0.33 8.14 -51.92 -0.42 -0.09 16 39 H 0.13 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.40 3.23 8.47 -40.82 -0.35 2.88 16 41 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 42 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 43 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 44 H 0.07 1.24 8.14 -51.92 -0.42 0.82 16 45 H 0.05 0.86 8.03 -51.93 -0.42 0.45 16 46 H 0.04 0.67 7.86 -51.93 -0.41 0.27 16 47 H 0.03 0.70 7.42 -51.93 -0.39 0.31 16 48 H 0.04 1.16 7.19 -51.93 -0.37 0.79 16 49 H 0.00 -0.09 7.85 -51.93 -0.41 -0.49 16 50 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 51 H 0.16 1.72 8.06 -52.49 -0.42 1.30 16 LS Contribution 421.40 15.07 6.35 6.35 Total: -1.00 -36.25 421.40 -9.78 -46.03 By element: Atomic # 1 Polarization: 8.26 SS G_CDS: -10.24 Total: -1.98 kcal Atomic # 6 Polarization: 7.56 SS G_CDS: -0.80 Total: 6.77 kcal Atomic # 7 Polarization: -55.75 SS G_CDS: -0.25 Total: -56.00 kcal Atomic # 8 Polarization: -17.69 SS G_CDS: 0.18 Total: -17.50 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.03 Total: 16.33 kcal Total LS contribution 6.35 Total: 6.35 kcal Total: -36.25 -9.78 -46.03 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316833075.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.924 kcal (2) G-P(sol) polarization free energy of solvation -36.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.031 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds