Wall clock time and date at job start Tue Mar 31 2020 21:16:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50702 * 109.47014 * 2 1 4 4 C 1.30998 * 120.00051 * 128.33250 * 3 2 1 5 5 C 1.50697 * 120.00141 * 7.11189 * 4 3 2 6 6 H 1.08997 * 109.47455 * 6.64762 * 5 4 3 7 7 O 1.42904 * 109.47226 * 246.65047 * 5 4 3 8 8 C 1.50702 * 109.47123 * 126.64863 * 5 4 3 9 9 N 1.30292 * 126.34262 * 74.96009 * 8 5 4 10 10 N 1.28537 * 110.05162 * 179.76427 * 9 8 5 11 11 C 1.31216 * 109.85692 * 0.44998 * 10 9 8 12 12 N 1.38571 * 126.47364 * 179.82232 * 11 10 9 13 13 C 1.46898 * 111.00303 * 250.57025 * 12 11 10 14 14 C 1.50697 * 109.47151 * 59.78113 * 13 12 11 15 15 H 1.07997 * 119.99857 * 4.84262 * 14 13 12 16 16 C 1.37878 * 119.99934 * 184.84994 * 14 13 12 17 17 N 1.31512 * 120.00166 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 119.99933 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.47075 * 359.97438 * 18 16 14 20 20 H 1.48499 * 109.47191 * 120.00102 * 18 16 14 21 21 H 1.48505 * 109.47012 * 239.99941 * 18 16 14 22 22 C 1.46904 * 111.00176 * 14.52307 * 12 11 10 23 23 C 1.52998 * 109.47512 * 170.55233 * 22 12 11 24 24 O 1.42898 * 109.47526 * 296.05509 * 23 22 12 25 25 C 1.42892 * 114.00024 * 179.97438 * 24 23 22 26 26 N 1.36457 * 107.05420 * 359.56209 * 11 10 9 27 27 C 1.46502 * 127.13383 * 180.28293 * 26 11 10 28 28 C 1.52999 * 109.46992 * 94.97642 * 27 26 11 29 29 H 1.09005 * 109.47140 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47374 * 300.00350 * 1 2 3 31 31 H 1.09000 * 109.47070 * 60.00511 * 1 2 3 32 32 H 1.08993 * 109.47078 * 239.99594 * 2 1 3 33 33 H 1.09000 * 109.47070 * 119.99489 * 2 1 3 34 34 H 1.08002 * 119.99919 * 308.32437 * 3 2 1 35 35 H 1.08001 * 120.00021 * 187.11652 * 4 3 2 36 36 H 0.96702 * 114.00086 * 299.99522 * 7 5 4 37 37 H 1.09001 * 109.47342 * 179.78417 * 13 12 11 38 38 H 1.08999 * 109.46958 * 299.77600 * 13 12 11 39 39 H 0.97003 * 120.00424 * 179.97438 * 17 16 14 40 40 H 1.09005 * 109.46623 * 50.55354 * 22 12 11 41 41 H 1.09003 * 109.46845 * 290.55861 * 22 12 11 42 42 H 1.09000 * 109.47199 * 176.04882 * 23 22 12 43 43 H 1.09002 * 109.46584 * 56.05424 * 23 22 12 44 44 H 1.09000 * 109.47069 * 179.97438 * 25 24 23 45 45 H 1.09000 * 109.47392 * 299.99569 * 25 24 23 46 46 H 1.08997 * 109.47250 * 60.00223 * 25 24 23 47 47 H 1.08999 * 109.46820 * 214.96912 * 27 26 11 48 48 H 1.08994 * 109.47388 * 334.97353 * 27 26 11 49 49 H 1.08995 * 109.47814 * 59.99654 * 28 27 26 50 50 H 1.09001 * 109.47223 * 179.97438 * 28 27 26 51 51 H 1.09003 * 109.47198 * 299.99190 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.9140 1.8039 0.8899 5 6 3.5455 0.7907 1.8095 6 1 3.2387 -0.2118 1.5112 7 8 3.1238 1.0380 3.1523 8 6 5.0461 0.9026 1.7256 9 7 5.7812 1.8395 2.2540 10 7 7.0216 1.6262 1.9931 11 6 7.1444 0.5380 1.2703 12 7 8.3268 -0.0061 0.7948 13 6 8.4316 0.1535 -0.6617 14 6 8.3944 1.6191 -1.0104 15 1 8.3811 2.3607 -0.2254 16 6 8.3773 2.0132 -2.3315 17 7 8.3939 1.1101 -3.2874 18 14 8.3305 3.8299 -2.7638 19 1 8.3174 4.6353 -1.5162 20 1 9.5303 4.1788 -3.5663 21 1 7.1060 4.1197 -3.5525 22 6 9.4883 0.5837 1.4739 23 6 10.7491 -0.1981 1.0999 24 8 10.6406 -1.5377 1.5855 25 6 11.7724 -2.3574 1.2872 26 7 5.8882 0.0401 1.0801 27 6 5.5186 -1.1681 0.3386 28 6 5.3951 -2.3443 1.3092 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 1.6655 2.1233 -0.7338 35 1 3.1884 2.8458 0.9646 36 1 3.3637 1.9138 3.4849 37 1 9.3704 -0.2787 -1.0080 38 1 7.5974 -0.3561 -1.1440 39 1 8.3814 1.3872 -4.2169 40 1 9.3396 0.5389 2.5529 41 1 9.6003 1.6232 1.1654 42 1 11.6199 0.2812 1.5472 43 1 10.8593 -0.2125 0.0156 44 1 11.6126 -3.3578 1.6896 45 1 11.9034 -2.4167 0.2067 46 1 12.6646 -1.9231 1.7381 47 1 4.5639 -1.0090 -0.1626 48 1 6.2862 -1.3882 -0.4032 49 1 4.6275 -2.1243 2.0511 50 1 5.1197 -3.2432 0.7576 51 1 6.3498 -2.5036 1.8105 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001342625817.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:16:38 Heat of formation + Delta-G solvation = 10.308259 kcal Electronic energy + Delta-G solvation = -31467.375416 eV Core-core repulsion = 27404.464387 eV Total energy + Delta-G solvation = -4062.911029 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.33576 -38.20128 -37.75506 -36.33102 -35.28815 -35.08296 -32.68362 -31.20952 -30.25393 -29.82505 -28.78258 -26.95435 -25.87407 -25.51907 -23.79883 -23.50088 -23.05627 -21.77356 -20.41427 -19.71760 -19.00052 -17.24909 -16.79182 -16.32006 -16.16709 -15.97256 -15.81919 -15.22625 -14.97682 -14.91235 -14.39668 -14.36710 -14.26914 -14.01713 -13.50731 -13.34226 -13.07598 -12.94194 -12.65351 -12.31137 -12.21496 -12.18422 -12.00933 -11.67092 -11.46197 -11.25041 -11.18235 -11.15492 -11.00060 -10.97929 -10.75942 -10.62448 -10.41978 -10.25500 -10.21501 -9.99723 -9.64923 -9.47397 -9.23897 -9.20183 -8.74511 -8.59294 -7.40426 -6.21530 -4.29441 1.97662 2.52090 2.85275 3.19182 3.28032 3.36616 3.55623 4.21612 4.31276 4.51085 4.55708 4.58561 4.64259 4.88898 4.94141 5.02475 5.11227 5.12448 5.19792 5.21406 5.42757 5.45208 5.51048 5.56897 5.65272 5.68867 5.74404 5.76200 5.79764 5.81332 5.86169 5.91424 5.93416 5.98078 6.06821 6.17141 6.23638 6.42422 6.53651 6.56816 6.70339 6.71903 6.93667 7.21619 7.23979 7.48237 7.58805 7.66300 7.74659 7.97455 8.12574 8.80068 9.38898 9.45390 10.84552 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.009106 B = 0.004483 C = 0.003588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3074.060135 B = 6244.717999 C = 7801.180790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.112 4.112 3 C -0.134 4.134 4 C -0.184 4.184 5 C 0.233 3.767 6 H 0.118 0.882 7 O -0.545 6.545 8 C 0.119 3.881 9 N -0.279 5.279 10 N -0.337 5.337 11 C 0.421 3.579 12 N -0.458 5.458 13 C 0.188 3.812 14 C -0.554 4.554 15 H 0.069 0.931 16 C 0.071 3.929 17 N -0.890 5.890 18 Si 0.889 3.111 19 H -0.270 1.270 20 H -0.281 1.281 21 H -0.284 1.284 22 C 0.082 3.918 23 C 0.065 3.935 24 O -0.380 6.380 25 C 0.032 3.968 26 N -0.465 5.465 27 C 0.105 3.895 28 C -0.165 4.165 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.054 0.946 32 H 0.073 0.927 33 H 0.075 0.925 34 H 0.115 0.885 35 H 0.120 0.880 36 H 0.386 0.614 37 H 0.048 0.952 38 H 0.037 0.963 39 H 0.263 0.737 40 H 0.073 0.927 41 H 0.079 0.921 42 H 0.049 0.951 43 H 0.064 0.936 44 H 0.078 0.922 45 H 0.038 0.962 46 H 0.033 0.967 47 H 0.083 0.917 48 H 0.107 0.893 49 H 0.057 0.943 50 H 0.074 0.926 51 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.625 -6.714 5.935 11.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.149 4.149 3 C -0.152 4.152 4 C -0.203 4.203 5 C 0.171 3.829 6 H 0.135 0.865 7 O -0.350 6.350 8 C -0.149 4.149 9 N -0.120 5.120 10 N -0.181 5.181 11 C 0.065 3.935 12 N -0.182 5.182 13 C 0.065 3.935 14 C -0.593 4.593 15 H 0.087 0.913 16 C -0.133 4.133 17 N -0.528 5.528 18 Si 0.717 3.283 19 H -0.194 1.194 20 H -0.207 1.207 21 H -0.210 1.210 22 C -0.046 4.046 23 C -0.011 4.011 24 O -0.298 6.298 25 C -0.065 4.065 26 N -0.160 5.160 27 C -0.018 4.018 28 C -0.223 4.223 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.073 0.927 32 H 0.092 0.908 33 H 0.093 0.907 34 H 0.133 0.867 35 H 0.137 0.863 36 H 0.235 0.765 37 H 0.066 0.934 38 H 0.055 0.945 39 H 0.073 0.927 40 H 0.091 0.909 41 H 0.097 0.903 42 H 0.067 0.933 43 H 0.082 0.918 44 H 0.097 0.903 45 H 0.057 0.943 46 H 0.052 0.948 47 H 0.101 0.899 48 H 0.125 0.875 49 H 0.076 0.924 50 H 0.093 0.907 51 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -7.623 -6.702 6.648 12.134 hybrid contribution 0.327 1.298 -1.751 2.205 sum -7.295 -5.404 4.897 10.315 Atomic orbital electron populations 1.21673 0.94777 1.01680 1.02023 1.20880 0.96601 0.94704 1.02724 1.22870 0.97018 0.97643 0.97675 1.23301 0.98541 1.00291 0.98215 1.19075 0.82304 0.98836 0.82657 0.86479 1.86543 1.80392 1.40511 1.27511 1.24954 0.95893 0.92098 1.01956 1.73657 0.97787 1.20340 1.20263 1.74575 1.10094 1.12088 1.21391 1.22510 0.85128 0.89368 0.96495 1.59284 0.97054 1.52372 1.09445 1.20037 0.98920 0.96839 0.77731 1.21814 1.52182 0.92493 0.92775 0.91281 1.24886 0.94391 0.97737 0.96248 1.69933 1.49814 1.33145 0.99936 0.86552 0.77699 0.85365 0.78702 1.19398 1.20728 1.20962 1.21883 0.87202 0.97222 0.98275 1.22680 0.96831 0.82344 0.99294 1.87966 1.40452 1.22504 1.78895 1.22653 0.88992 0.95187 0.99645 1.45920 1.06159 1.22033 1.41917 1.21865 1.02830 0.82326 0.94803 1.22133 1.03302 0.97244 0.99658 0.92521 0.92469 0.92664 0.90825 0.90697 0.86662 0.86255 0.76458 0.93409 0.94522 0.92693 0.90874 0.90292 0.93263 0.91832 0.90344 0.94288 0.94840 0.89900 0.87496 0.92395 0.90689 0.91155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.22 9.89 37.16 0.37 -0.85 16 2 C -0.11 -1.12 6.01 -27.88 -0.17 -1.29 16 3 C -0.13 -1.58 9.51 -36.02 -0.34 -1.92 16 4 C -0.18 -2.52 9.09 -36.03 -0.33 -2.85 16 5 C 0.23 3.38 3.36 -29.04 -0.10 3.28 16 6 H 0.12 1.53 4.55 -51.93 -0.24 1.29 16 7 O -0.54 -7.69 13.32 -35.23 -0.47 -8.16 16 8 C 0.12 2.22 6.91 -154.02 -1.06 1.15 16 9 N -0.28 -5.97 12.10 32.99 0.40 -5.57 16 10 N -0.34 -7.81 11.26 30.31 0.34 -7.47 16 11 C 0.42 9.24 5.85 -318.88 -1.87 7.38 16 12 N -0.46 -9.82 4.66 -175.88 -0.82 -10.64 16 13 C 0.19 4.52 4.76 -4.98 -0.02 4.49 16 14 C -0.55 -14.72 7.71 -34.44 -0.27 -14.99 16 15 H 0.07 1.94 6.40 -52.49 -0.34 1.60 16 16 C 0.07 1.92 5.46 -17.82 -0.10 1.82 16 17 N -0.89 -24.73 13.29 55.43 0.74 -23.99 16 18 Si 0.89 21.47 29.54 -169.99 -5.02 16.45 16 19 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 20 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 21 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 22 C 0.08 1.63 4.58 -3.82 -0.02 1.61 16 23 C 0.07 1.14 5.97 37.16 0.22 1.36 16 24 O -0.38 -6.54 10.63 -35.23 -0.37 -6.91 16 25 C 0.03 0.42 11.01 101.05 1.11 1.53 16 26 N -0.46 -8.89 2.81 -114.09 -0.32 -9.21 16 27 C 0.10 1.62 6.37 -4.04 -0.03 1.59 16 28 C -0.17 -2.09 10.24 37.16 0.38 -1.71 16 29 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 33 H 0.07 0.76 5.32 -51.93 -0.28 0.48 16 34 H 0.12 1.26 8.06 -52.49 -0.42 0.83 16 35 H 0.12 1.71 8.06 -52.49 -0.42 1.28 16 36 H 0.39 4.77 8.96 45.56 0.41 5.18 16 37 H 0.05 1.19 6.19 -51.93 -0.32 0.87 16 38 H 0.04 0.93 6.03 -51.93 -0.31 0.62 16 39 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 40 H 0.07 1.44 7.99 -51.93 -0.42 1.03 16 41 H 0.08 1.71 6.50 -51.93 -0.34 1.37 16 42 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 43 H 0.06 1.19 6.28 -51.93 -0.33 0.86 16 44 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 45 H 0.04 0.50 8.14 -51.93 -0.42 0.07 16 46 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 47 H 0.08 1.10 7.76 -51.93 -0.40 0.70 16 48 H 0.11 1.83 5.92 -51.93 -0.31 1.52 16 49 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 50 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 51 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 411.54 15.07 6.20 6.20 Total: -1.00 -31.98 411.54 -9.03 -41.02 By element: Atomic # 1 Polarization: 15.19 SS G_CDS: -7.49 Total: 7.69 kcal Atomic # 6 Polarization: 2.80 SS G_CDS: -2.21 Total: 0.59 kcal Atomic # 7 Polarization: -57.21 SS G_CDS: 0.34 Total: -56.88 kcal Atomic # 8 Polarization: -14.23 SS G_CDS: -0.84 Total: -15.07 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -31.98 -9.03 -41.02 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001342625817.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.326 kcal (2) G-P(sol) polarization free energy of solvation -31.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.018 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds