Wall clock time and date at job start Tue Mar 31 2020 20:57:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52995 * 109.47233 * 2 1 4 4 C 1.50705 * 109.47179 * 120.00326 * 2 1 3 5 5 N 1.29936 * 126.28683 * 300.02583 * 4 2 1 6 6 O 1.21309 * 110.25112 * 179.68505 * 5 4 2 7 7 C 1.33634 * 109.80931 * 0.46763 * 6 5 4 8 8 C 1.50697 * 126.55268 * 179.80355 * 7 6 5 9 9 C 1.52997 * 109.47050 * 269.68826 * 8 7 6 10 10 C 1.50706 * 109.47267 * 179.97438 * 9 8 7 11 11 O 1.21284 * 119.99693 * 359.97438 * 10 9 8 12 12 N 1.34773 * 119.99967 * 179.97438 * 10 9 8 13 13 C 1.46507 * 119.99647 * 179.97438 * 12 10 9 14 14 C 1.53000 * 109.46803 * 179.97438 * 13 12 10 15 15 H 1.09002 * 109.47398 * 295.00382 * 14 13 12 16 16 N 1.46500 * 109.47023 * 55.00453 * 14 13 12 17 17 C 1.36933 * 119.99983 * 204.99625 * 16 14 13 18 18 H 1.08002 * 120.00189 * 0.02562 * 17 16 14 19 19 C 1.38812 * 120.00422 * 179.97438 * 17 16 14 20 20 N 1.31623 * 119.99438 * 359.97438 * 19 17 16 21 21 Si 1.86795 * 120.00488 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.46869 * 359.97438 * 21 19 17 23 23 H 1.48498 * 109.47383 * 120.00043 * 21 19 17 24 24 H 1.48500 * 109.47270 * 240.00058 * 21 19 17 25 25 C 1.52997 * 109.47060 * 175.00213 * 14 13 12 26 26 C 1.52999 * 109.47317 * 59.99960 * 25 14 13 27 27 C 1.52992 * 109.47482 * 180.02562 * 25 14 13 28 28 N 1.31128 * 106.89832 * 359.54016 * 7 6 5 29 29 H 1.08997 * 109.47000 * 299.99700 * 1 2 3 30 30 H 1.08999 * 109.47121 * 60.00209 * 1 2 3 31 31 H 1.09007 * 109.47122 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47472 * 240.00068 * 2 1 3 33 33 H 1.09006 * 109.47432 * 179.97438 * 3 2 1 34 34 H 1.08994 * 109.47351 * 300.00481 * 3 2 1 35 35 H 1.09005 * 109.46565 * 60.00320 * 3 2 1 36 36 H 1.09003 * 109.47604 * 149.68522 * 8 7 6 37 37 H 1.09000 * 109.47054 * 29.68368 * 8 7 6 38 38 H 1.08994 * 109.47510 * 59.99927 * 9 8 7 39 39 H 1.09000 * 109.47278 * 299.99418 * 9 8 7 40 40 H 0.96994 * 120.00616 * 359.97438 * 12 10 9 41 41 H 1.09008 * 109.46606 * 60.00319 * 13 12 10 42 42 H 1.08990 * 109.47517 * 299.99936 * 13 12 10 43 43 H 0.96997 * 120.00274 * 24.99518 * 16 14 13 44 44 H 0.97001 * 120.00131 * 179.97438 * 20 19 17 45 45 H 1.09002 * 109.47153 * 300.00319 * 25 14 13 46 46 H 1.09002 * 109.46716 * 60.00091 * 26 25 14 47 47 H 1.09000 * 109.47486 * 180.02562 * 26 25 14 48 48 H 1.09001 * 109.47362 * 300.00732 * 26 25 14 49 49 H 1.09001 * 109.47066 * 60.00169 * 27 25 14 50 50 H 1.08996 * 109.47747 * 179.97438 * 27 25 14 51 51 H 1.09002 * 109.47103 * 300.00247 * 27 25 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7105 1.2305 5 7 1.7945 -0.3751 2.4631 6 8 2.3362 -1.1517 3.2215 7 6 2.9991 -2.0785 2.5234 8 6 3.8058 -3.2198 3.0868 9 6 5.2566 -2.7732 3.2781 10 6 6.0634 -3.9144 3.8422 11 8 5.5302 -4.9798 4.0693 12 7 7.3772 -3.7509 4.0942 13 6 8.1613 -4.8602 4.6431 14 6 9.6124 -4.4140 4.8330 15 1 10.0569 -4.1998 3.8611 16 7 9.6475 -3.2071 5.6628 17 6 10.7026 -2.3397 5.5653 18 1 11.5087 -2.5451 4.8765 19 6 10.7357 -1.1959 6.3511 20 7 9.7526 -0.9448 7.1895 21 14 12.1746 -0.0123 6.2176 22 1 13.1404 -0.5189 5.2098 23 1 11.6793 1.3243 5.8012 24 1 12.8485 0.0984 7.5363 25 6 10.4029 -5.5289 5.5208 26 6 10.3662 -6.7893 4.6543 27 6 11.8538 -5.0825 5.7114 28 7 2.8087 -1.8085 1.2544 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 3.1300 1.4425 0.0005 34 1 1.6766 1.9563 -0.8899 35 1 1.6766 1.9562 0.8901 36 1 3.7732 -4.0633 2.3971 37 1 3.3885 -3.5201 4.0479 38 1 5.2893 -1.9299 3.9679 39 1 5.6741 -2.4730 2.3171 40 1 7.8037 -2.8990 3.9123 41 1 8.1283 -5.7042 3.9541 42 1 7.7440 -5.1594 5.6045 43 1 8.9234 -3.0224 6.2812 44 1 9.7758 -0.1457 7.7389 45 1 9.9584 -5.7431 6.4927 46 1 10.8107 -6.5751 3.6824 47 1 10.9289 -7.5838 5.1445 48 1 9.3324 -7.1072 4.5189 49 1 11.8796 -4.1847 6.3289 50 1 12.4168 -5.8765 6.2017 51 1 12.2985 -4.8680 4.7396 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001482544666.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:57:20 Heat of formation + Delta-G solvation = 11.032597 kcal Electronic energy + Delta-G solvation = -29143.514310 eV Core-core repulsion = 25080.634690 eV Total energy + Delta-G solvation = -4062.879620 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -45.74137 -39.58477 -37.35104 -37.11338 -35.41844 -33.91599 -33.61228 -33.15895 -31.12190 -30.38641 -28.25030 -27.60283 -26.27934 -25.62312 -24.80786 -23.72432 -22.94767 -21.75342 -20.31967 -20.10889 -19.27519 -18.24799 -17.74485 -17.39417 -16.72951 -15.77517 -15.76035 -15.35852 -15.10926 -14.99264 -14.34605 -14.10427 -13.85317 -13.81119 -13.63906 -13.41683 -13.24375 -12.80496 -12.64485 -12.63379 -12.55972 -12.16038 -12.05837 -12.01561 -11.93352 -11.65568 -11.49556 -11.39932 -11.35014 -11.08775 -11.07556 -10.99543 -10.86377 -10.67398 -10.32563 -10.11805 -10.09364 -9.99078 -9.65316 -9.57096 -8.96703 -8.67814 -7.07431 -5.86480 -3.15696 0.97383 2.04071 2.61229 2.83492 3.30191 3.36018 3.42864 3.44864 3.56542 3.85458 4.48206 4.50176 4.60876 4.64464 4.65852 4.85291 4.94852 5.14585 5.21082 5.30263 5.31928 5.36546 5.39535 5.41102 5.46970 5.50031 5.57018 5.60418 5.62434 5.72559 5.76010 5.78494 5.80542 5.87379 5.92806 5.97256 6.15332 6.21297 6.34915 6.41938 6.50620 6.59808 6.64113 6.87510 7.03983 7.26600 7.63239 7.84462 8.01491 8.30858 8.46497 9.43137 9.97545 10.33386 11.35277 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.011262 B = 0.002332 C = 0.002029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2485.622024 B =12004.353972 C =13797.549050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.004 4.004 3 C -0.146 4.146 4 C 0.173 3.827 5 N -0.382 5.382 6 O 0.079 5.921 7 C 0.189 3.811 8 C -0.011 4.011 9 C -0.140 4.140 10 C 0.516 3.484 11 O -0.555 6.555 12 N -0.709 5.709 13 C 0.113 3.887 14 C 0.169 3.831 15 H 0.053 0.947 16 N -0.721 5.721 17 C -0.236 4.236 18 H 0.073 0.927 19 C -0.011 4.011 20 N -0.929 5.929 21 Si 0.902 3.098 22 H -0.280 1.280 23 H -0.292 1.292 24 H -0.292 1.292 25 C -0.109 4.109 26 C -0.149 4.149 27 C -0.139 4.139 28 N -0.482 5.482 29 H 0.063 0.937 30 H 0.070 0.930 31 H 0.058 0.942 32 H 0.101 0.899 33 H 0.060 0.940 34 H 0.070 0.930 35 H 0.063 0.937 36 H 0.118 0.882 37 H 0.111 0.889 38 H 0.104 0.896 39 H 0.101 0.899 40 H 0.411 0.589 41 H 0.067 0.933 42 H 0.064 0.936 43 H 0.385 0.615 44 H 0.255 0.745 45 H 0.063 0.937 46 H 0.049 0.951 47 H 0.045 0.955 48 H 0.051 0.949 49 H 0.086 0.914 50 H 0.031 0.969 51 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.337 -2.497 -12.689 18.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.024 4.024 3 C -0.204 4.204 4 C -0.100 4.100 5 N -0.089 5.089 6 O 0.020 5.980 7 C -0.031 4.031 8 C -0.050 4.050 9 C -0.181 4.181 10 C 0.301 3.699 11 O -0.435 6.435 12 N -0.360 5.360 13 C -0.011 4.011 14 C 0.059 3.941 15 H 0.071 0.929 16 N -0.363 5.363 17 C -0.367 4.367 18 H 0.091 0.909 19 C -0.207 4.207 20 N -0.576 5.576 21 Si 0.733 3.267 22 H -0.206 1.206 23 H -0.219 1.219 24 H -0.219 1.219 25 C -0.131 4.131 26 C -0.207 4.207 27 C -0.197 4.197 28 N -0.215 5.215 29 H 0.082 0.918 30 H 0.089 0.911 31 H 0.077 0.923 32 H 0.119 0.881 33 H 0.079 0.921 34 H 0.089 0.911 35 H 0.082 0.918 36 H 0.136 0.864 37 H 0.130 0.870 38 H 0.122 0.878 39 H 0.119 0.881 40 H 0.248 0.752 41 H 0.085 0.915 42 H 0.082 0.918 43 H 0.219 0.781 44 H 0.065 0.935 45 H 0.081 0.919 46 H 0.068 0.932 47 H 0.064 0.936 48 H 0.070 0.930 49 H 0.105 0.895 50 H 0.050 0.950 51 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -13.991 -2.499 -12.781 19.114 hybrid contribution 0.989 1.071 0.343 1.497 sum -13.001 -1.429 -12.438 18.050 Atomic orbital electron populations 1.21848 0.92927 1.02536 1.02978 1.19556 0.96354 0.95460 0.91014 1.21856 1.01660 0.93903 1.02979 1.25836 0.96778 0.92781 0.94629 1.74586 1.17829 1.13659 1.02834 1.85324 1.47639 1.29723 1.35269 1.28859 0.94434 0.93941 0.85912 1.19968 0.91199 0.90043 1.03782 1.21615 0.93396 0.99000 1.04125 1.20201 0.82594 0.88843 0.78240 1.90688 1.70886 1.28092 1.53785 1.45975 1.08745 1.17279 1.64018 1.21757 0.92193 0.88631 0.98526 1.20555 0.90768 0.87916 0.94888 0.92862 1.42468 1.25586 1.21261 1.46972 1.19232 0.99272 0.99904 1.18324 0.90869 1.24731 0.98101 0.98655 0.99244 1.69666 1.32219 1.27942 1.27820 0.86207 0.82028 0.81234 0.77250 1.20552 1.21942 1.21931 1.21728 0.97659 0.94660 0.99077 1.21941 1.00939 0.97903 0.99905 1.21818 0.94524 1.01893 1.01429 1.71926 1.17263 1.14211 1.18134 0.91839 0.91059 0.92318 0.88058 0.92133 0.91054 0.91817 0.86397 0.87033 0.87755 0.88060 0.75204 0.91511 0.91798 0.78095 0.93520 0.91886 0.93200 0.93567 0.93027 0.89515 0.94995 0.94067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.05 9.17 37.15 0.34 -0.71 16 2 C 0.00 -0.03 3.39 -91.77 -0.31 -0.34 16 3 C -0.15 -1.13 9.18 37.16 0.34 -0.79 16 4 C 0.17 2.06 6.72 -156.38 -1.05 1.00 16 5 N -0.38 -4.96 12.16 30.90 0.38 -4.59 16 6 O 0.08 0.99 11.31 18.12 0.20 1.20 16 7 C 0.19 2.17 7.77 -13.06 -0.10 2.07 16 8 C -0.01 -0.11 5.13 -27.89 -0.14 -0.25 16 9 C -0.14 -1.51 5.68 -27.88 -0.16 -1.67 16 10 C 0.52 7.29 7.83 -10.98 -0.09 7.21 16 11 O -0.56 -9.31 15.98 5.55 0.09 -9.22 16 12 N -0.71 -10.60 5.39 -60.29 -0.32 -10.92 16 13 C 0.11 1.78 4.73 -4.04 -0.02 1.76 16 14 C 0.17 2.94 2.18 -67.93 -0.15 2.79 16 15 H 0.05 0.95 8.08 -51.93 -0.42 0.53 16 16 N -0.72 -15.62 4.44 -53.43 -0.24 -15.85 16 17 C -0.24 -5.77 7.57 -15.06 -0.11 -5.88 16 18 H 0.07 1.77 7.40 -52.49 -0.39 1.38 16 19 C -0.01 -0.29 5.50 -17.43 -0.10 -0.38 16 20 N -0.93 -26.02 13.06 55.49 0.72 -25.30 16 21 Si 0.90 21.07 29.55 -169.99 -5.02 16.05 16 22 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 23 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 24 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 25 C -0.11 -1.79 2.69 -90.63 -0.24 -2.03 16 26 C -0.15 -2.00 8.84 37.16 0.33 -1.67 16 27 C -0.14 -2.42 8.26 37.15 0.31 -2.12 16 28 N -0.48 -6.02 11.55 -9.87 -0.11 -6.13 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 36 H 0.12 1.16 8.10 -51.93 -0.42 0.73 16 37 H 0.11 1.05 8.10 -51.93 -0.42 0.63 16 38 H 0.10 1.09 8.14 -51.93 -0.42 0.66 16 39 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.41 6.26 8.14 -40.82 -0.33 5.93 16 41 H 0.07 0.99 6.71 -51.92 -0.35 0.64 16 42 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 43 H 0.39 9.17 7.80 -40.82 -0.32 8.85 16 44 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 45 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 46 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 47 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 48 H 0.05 0.65 6.54 -51.93 -0.34 0.31 16 49 H 0.09 1.80 6.01 -51.93 -0.31 1.49 16 50 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 51 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 416.71 15.07 6.28 6.28 Total: -1.00 -29.57 416.71 -7.96 -37.53 By element: Atomic # 1 Polarization: 20.75 SS G_CDS: -8.78 Total: 11.97 kcal Atomic # 6 Polarization: 0.15 SS G_CDS: -1.16 Total: -1.01 kcal Atomic # 7 Polarization: -63.22 SS G_CDS: 0.42 Total: -62.80 kcal Atomic # 8 Polarization: -8.32 SS G_CDS: 0.29 Total: -8.03 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 6.28 Total: 6.28 kcal Total: -29.57 -7.96 -37.53 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482544666.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.564 kcal (2) G-P(sol) polarization free energy of solvation -29.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.531 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds