Wall clock time and date at job start Tue Mar 31 2020 21:18:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.46819 * 2 1 4 4 C 1.53001 * 109.47187 * 179.97438 * 3 2 1 5 5 C 1.52991 * 109.47365 * 179.97438 * 4 3 2 6 6 H 1.09001 * 109.47412 * 305.00366 * 5 4 3 7 7 C 1.52999 * 109.47331 * 184.99913 * 5 4 3 8 8 N 1.46501 * 109.47593 * 184.99892 * 7 5 4 9 9 C 1.36932 * 120.00626 * 179.97438 * 8 7 5 10 10 H 1.08000 * 119.99512 * 359.72880 * 9 8 7 11 11 C 1.38807 * 120.00517 * 179.72484 * 9 8 7 12 12 N 1.31614 * 119.99991 * 0.02562 * 11 9 8 13 13 Si 1.86798 * 120.00417 * 179.97438 * 11 9 8 14 14 H 1.48507 * 109.46843 * 60.00356 * 13 11 9 15 15 H 1.48501 * 109.47342 * 180.02562 * 13 11 9 16 16 H 1.48492 * 109.47179 * 300.00551 * 13 11 9 17 17 N 1.46499 * 109.47150 * 65.00216 * 5 4 3 18 18 C 1.34782 * 119.99829 * 274.99889 * 17 5 4 19 19 O 1.21665 * 119.99854 * 359.97438 * 18 17 5 20 20 C 1.46923 * 119.99836 * 179.97438 * 18 17 5 21 21 C 1.41463 * 126.49819 * 89.69435 * 20 18 17 22 22 C 1.50699 * 125.92903 * 359.97438 * 21 20 18 23 23 N 1.30317 * 108.13610 * 179.81677 * 21 20 18 24 24 N 1.39905 * 109.15253 * 0.44168 * 23 21 20 25 25 C 1.46495 * 125.74237 * 179.75228 * 24 23 21 26 26 C 1.34658 * 108.51067 * 359.71712 * 24 23 21 27 27 O 1.35352 * 126.40174 * 180.02562 * 26 24 23 28 28 C 1.42905 * 116.99637 * 274.23437 * 27 26 24 29 29 H 1.08996 * 109.47112 * 299.99587 * 1 2 3 30 30 H 1.09002 * 109.46983 * 60.00304 * 1 2 3 31 31 H 1.09008 * 109.46701 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47089 * 239.99967 * 2 1 3 33 33 H 1.08994 * 109.47136 * 119.99924 * 2 1 3 34 34 H 1.09001 * 109.47317 * 60.00107 * 3 2 1 35 35 H 1.09002 * 109.47095 * 299.99627 * 3 2 1 36 36 H 1.09001 * 109.46872 * 59.99874 * 4 3 2 37 37 H 1.08998 * 109.46992 * 300.00560 * 4 3 2 38 38 H 1.09007 * 109.47043 * 65.00312 * 7 5 4 39 39 H 1.08999 * 109.47356 * 304.99887 * 7 5 4 40 40 H 0.97009 * 119.99427 * 359.72936 * 8 7 5 41 41 H 0.97008 * 120.00406 * 180.02562 * 12 11 9 42 42 H 0.96998 * 120.00744 * 95.00152 * 17 5 4 43 43 H 1.09004 * 109.47204 * 90.00389 * 22 21 20 44 44 H 1.09008 * 109.47319 * 210.00414 * 22 21 20 45 45 H 1.09001 * 109.47118 * 330.00375 * 22 21 20 46 46 H 1.09006 * 109.47041 * 274.13947 * 25 24 23 47 47 H 1.09005 * 109.46919 * 34.13373 * 25 24 23 48 48 H 1.08995 * 109.47075 * 154.13973 * 25 24 23 49 49 H 1.09002 * 109.47032 * 64.67387 * 28 27 26 50 50 H 1.09001 * 109.46811 * 184.66962 * 28 27 26 51 51 H 1.08996 * 109.46786 * 304.66883 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 6 4.0799 2.8850 0.0000 6 1 3.6456 3.4236 -0.8423 7 6 5.6048 2.8869 -0.1251 8 7 6.1030 4.2594 -0.0059 9 6 7.4468 4.5096 -0.0866 10 1 8.1399 3.6944 -0.2337 11 6 7.9184 5.8107 0.0205 12 7 7.0738 6.8040 0.2002 13 14 9.7517 6.1518 -0.0888 14 1 10.2630 5.6922 -1.4052 15 1 9.9934 7.6099 0.0549 16 1 10.4562 5.4243 0.9972 17 7 3.6918 3.5407 1.2513 18 6 2.4744 4.1077 1.3656 19 8 1.6980 4.0754 0.4294 20 6 2.0850 4.7648 2.6206 21 6 2.2895 6.1234 2.9578 22 6 2.9506 7.1607 2.0871 23 7 1.8039 6.3229 4.1505 24 7 1.2796 5.1215 4.6395 25 6 0.6492 4.9328 5.9483 26 6 1.4513 4.1681 3.7042 27 8 1.0762 2.8711 3.8010 28 6 1.9922 1.9766 4.4357 29 1 -0.3633 0.5137 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0278 0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 1.6766 1.9564 0.8900 35 1 1.6766 1.9563 -0.8900 36 1 3.9337 0.9286 -0.8891 37 1 3.9329 0.9289 0.8908 38 1 5.8903 2.4797 -1.0951 39 1 6.0351 2.2742 0.6671 40 1 5.4804 4.9915 0.1266 41 1 7.4033 7.7134 0.2747 42 1 4.3110 3.5669 1.9975 43 1 2.1976 7.6495 1.4688 44 1 3.4422 7.9031 2.7160 45 1 3.6901 6.6799 1.4469 46 1 1.4161 4.7247 6.6944 47 1 0.1090 5.8382 6.2253 48 1 -0.0466 4.0952 5.8991 49 1 2.1083 2.2578 5.4824 50 1 1.6078 0.9585 4.3735 51 1 2.9590 2.0312 3.9354 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001485468983.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:18:24 Heat of formation + Delta-G solvation = -20.131072 kcal Electronic energy + Delta-G solvation = -31387.304010 eV Core-core repulsion = 27323.073032 eV Total energy + Delta-G solvation = -4064.230978 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.66617 -40.65208 -39.27815 -37.78257 -36.21488 -35.08826 -34.91745 -32.99328 -31.86991 -31.05541 -30.29650 -28.74098 -28.12027 -26.76471 -25.79308 -23.76036 -23.70259 -21.94662 -21.73147 -21.45198 -21.01345 -19.30366 -18.85578 -17.90429 -17.63476 -17.32918 -16.97062 -16.64010 -16.17864 -15.73959 -15.72623 -15.51607 -15.17228 -15.01122 -14.81003 -14.44515 -14.41879 -14.26040 -14.07086 -13.74624 -13.66490 -13.47512 -13.33824 -13.11277 -13.08969 -12.82546 -12.74306 -12.71734 -12.47086 -12.33907 -12.14189 -11.97211 -11.80878 -11.79869 -11.37196 -11.34235 -11.25734 -10.96550 -10.84437 -10.26714 -9.89333 -9.66323 -8.94302 -7.87514 -5.16589 0.30376 1.10217 1.26992 1.51151 1.53073 1.59045 1.62683 2.33517 2.47272 2.60402 3.36055 3.46245 3.66665 3.88501 4.03320 4.12127 4.14493 4.20445 4.26116 4.29508 4.31548 4.33724 4.36507 4.39667 4.44450 4.58328 4.60512 4.64991 4.65949 4.69130 4.84175 4.88876 4.93689 4.95921 4.99295 5.03411 5.13156 5.13654 5.18708 5.26988 5.37671 5.43773 5.46779 5.56026 5.63548 5.68758 6.26753 6.32592 6.44893 6.62800 7.32400 7.40367 8.13798 8.38415 9.34727 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.008784 B = 0.004311 C = 0.003211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3186.719229 B = 6492.705542 C = 8718.194152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.118 4.118 3 C -0.106 4.106 4 C -0.115 4.115 5 C 0.146 3.854 6 H 0.059 0.941 7 C 0.147 3.853 8 N -0.742 5.742 9 C -0.246 4.246 10 H 0.076 0.924 11 C -0.068 4.068 12 N -0.960 5.960 13 Si 0.968 3.032 14 H -0.282 1.282 15 H -0.299 1.299 16 H -0.278 1.278 17 N -0.694 5.694 18 C 0.609 3.391 19 O -0.567 6.567 20 C -0.311 4.311 21 C 0.118 3.882 22 C -0.073 4.073 23 N -0.295 5.295 24 N -0.364 5.364 25 C 0.084 3.916 26 C 0.298 3.702 27 O -0.312 6.312 28 C 0.024 3.976 29 H 0.044 0.956 30 H 0.042 0.958 31 H 0.067 0.933 32 H 0.066 0.934 33 H 0.069 0.931 34 H 0.048 0.952 35 H 0.039 0.961 36 H 0.084 0.916 37 H 0.079 0.921 38 H 0.037 0.963 39 H 0.039 0.961 40 H 0.375 0.625 41 H 0.250 0.750 42 H 0.403 0.597 43 H 0.088 0.912 44 H 0.086 0.914 45 H 0.066 0.934 46 H 0.098 0.902 47 H 0.104 0.896 48 H 0.110 0.890 49 H 0.071 0.929 50 H 0.131 0.869 51 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.512 -12.915 12.054 22.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.155 4.155 3 C -0.143 4.143 4 C -0.154 4.154 5 C 0.041 3.959 6 H 0.077 0.923 7 C 0.020 3.980 8 N -0.385 5.385 9 C -0.378 4.378 10 H 0.094 0.906 11 C -0.261 4.261 12 N -0.610 5.610 13 Si 0.798 3.202 14 H -0.208 1.208 15 H -0.225 1.225 16 H -0.204 1.204 17 N -0.344 5.344 18 C 0.394 3.606 19 O -0.446 6.446 20 C -0.326 4.326 21 C -0.048 4.048 22 C -0.132 4.132 23 N -0.121 5.121 24 N -0.153 5.153 25 C -0.054 4.054 26 C 0.125 3.875 27 O -0.221 6.221 28 C -0.070 4.070 29 H 0.063 0.937 30 H 0.061 0.939 31 H 0.086 0.914 32 H 0.085 0.915 33 H 0.088 0.912 34 H 0.067 0.933 35 H 0.058 0.942 36 H 0.103 0.897 37 H 0.098 0.902 38 H 0.055 0.945 39 H 0.057 0.943 40 H 0.208 0.792 41 H 0.059 0.941 42 H 0.238 0.762 43 H 0.106 0.894 44 H 0.105 0.895 45 H 0.085 0.915 46 H 0.116 0.884 47 H 0.122 0.878 48 H 0.128 0.872 49 H 0.089 0.911 50 H 0.149 0.851 51 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -14.316 -12.363 12.349 22.590 hybrid contribution 1.309 0.480 -0.381 1.445 sum -13.007 -11.883 11.968 21.299 Atomic orbital electron populations 1.21729 0.96063 1.01706 1.01088 1.21516 0.95799 0.95818 1.02382 1.21551 0.94752 0.96749 1.01291 1.21903 0.95871 0.94045 1.03590 1.21187 0.94226 0.94202 0.86249 0.92289 1.21094 0.90721 0.86985 0.99185 1.42505 1.04447 1.03727 1.87865 1.19542 0.84973 0.92577 1.40715 0.90569 1.25459 1.01339 0.95735 1.03528 1.69800 1.34405 0.98863 1.57968 0.85305 0.80866 0.76108 0.77967 1.20802 1.22501 1.20436 1.45898 1.15414 1.56345 1.16733 1.17039 0.81387 0.76411 0.85724 1.90751 1.52679 1.60165 1.40994 1.19901 1.17618 0.96183 0.98933 1.22322 0.96389 0.93447 0.92623 1.20226 0.99731 0.95791 0.97408 1.77097 1.19364 1.03203 1.12432 1.49079 1.45497 1.05629 1.15102 1.22375 0.99103 1.05678 0.78293 1.19079 0.96228 0.83580 0.88637 1.86035 1.45161 1.11612 1.79324 1.23517 0.93008 0.93241 0.97274 0.93721 0.93851 0.91392 0.91506 0.91190 0.93338 0.94213 0.89742 0.90233 0.94504 0.94291 0.79245 0.94142 0.76165 0.89386 0.89481 0.91517 0.88354 0.87764 0.87181 0.91057 0.85069 0.93004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.06 9.91 71.98 0.71 -2.34 16 2 C -0.12 -2.46 5.93 30.60 0.18 -2.28 16 3 C -0.11 -2.92 3.81 30.59 0.12 -2.80 16 4 C -0.12 -2.99 4.89 30.59 0.15 -2.84 16 5 C 0.15 4.90 2.41 44.99 0.11 5.01 16 6 H 0.06 2.34 7.58 -2.39 -0.02 2.32 16 7 C 0.15 5.52 5.82 86.38 0.50 6.02 16 8 N -0.74 -36.29 5.43 -343.45 -1.87 -38.15 16 9 C -0.25 -13.28 9.99 84.03 0.84 -12.44 16 10 H 0.08 3.91 7.83 -2.91 -0.02 3.89 16 11 C -0.07 -3.78 5.50 84.86 0.47 -3.31 16 12 N -0.96 -57.15 13.06 21.65 0.28 -56.87 16 13 Si 0.97 45.27 29.55 68.60 2.03 47.30 16 14 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 15 H -0.30 -14.21 7.11 99.48 0.71 -13.50 16 16 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 17 N -0.69 -23.32 4.47 -446.28 -1.99 -25.31 16 18 C 0.61 22.31 5.90 86.52 0.51 22.82 16 19 O -0.57 -24.10 14.24 -4.24 -0.06 -24.16 16 20 C -0.31 -10.59 5.89 -20.03 -0.12 -10.71 16 21 C 0.12 4.03 7.26 43.58 0.32 4.35 16 22 C -0.07 -2.48 10.28 71.24 0.73 -1.75 16 23 N -0.30 -9.27 12.48 -46.63 -0.58 -9.85 16 24 N -0.36 -9.26 3.99 -479.81 -1.91 -11.17 16 25 C 0.08 1.16 11.41 127.77 1.46 2.61 16 26 C 0.30 8.43 7.02 84.44 0.59 9.02 16 27 O -0.31 -7.31 10.37 -86.42 -0.90 -8.21 16 28 C 0.02 0.35 11.13 113.37 1.26 1.61 16 29 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.07 1.11 8.14 -2.38 -0.02 1.09 16 32 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 33 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 34 H 0.05 1.53 5.65 -2.39 -0.01 1.52 16 35 H 0.04 1.29 7.84 -2.39 -0.02 1.27 16 36 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 37 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 38 H 0.04 1.38 8.14 -2.38 -0.02 1.36 16 39 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 40 H 0.38 19.92 7.34 -92.70 -0.68 19.24 16 41 H 0.25 14.57 8.31 -92.70 -0.77 13.80 16 42 H 0.40 13.24 8.58 -92.71 -0.80 12.44 16 43 H 0.09 2.77 8.14 -2.38 -0.02 2.75 16 44 H 0.09 2.74 8.14 -2.38 -0.02 2.72 16 45 H 0.07 2.64 8.01 -2.39 -0.02 2.62 16 46 H 0.10 0.96 8.14 -2.38 -0.02 0.94 16 47 H 0.10 1.23 8.14 -2.38 -0.02 1.21 16 48 H 0.11 1.08 8.03 -2.39 -0.02 1.06 16 49 H 0.07 0.75 8.14 -2.39 -0.02 0.74 16 50 H 0.13 1.25 8.14 -2.39 -0.02 1.23 16 51 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 Total: -1.00 -72.60 421.52 2.28 -70.32 By element: Atomic # 1 Polarization: 43.67 SS G_CDS: -0.55 Total: 43.12 kcal Atomic # 6 Polarization: 5.15 SS G_CDS: 7.83 Total: 12.98 kcal Atomic # 7 Polarization: -135.28 SS G_CDS: -6.07 Total: -141.36 kcal Atomic # 8 Polarization: -31.41 SS G_CDS: -0.96 Total: -32.37 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 2.03 Total: 47.30 kcal Total: -72.60 2.28 -70.32 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485468983.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.189 kcal (2) G-P(sol) polarization free energy of solvation -72.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds