Wall clock time and date at job start Tue Mar 31 2020 21:41:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50704 * 119.99609 * 2 1 4 4 N 1.46504 * 109.47127 * 124.99871 * 3 2 1 5 5 C 1.34775 * 120.00268 * 179.97438 * 4 3 2 6 6 O 1.21591 * 119.99630 * 359.97438 * 5 4 3 7 7 N 1.34772 * 120.00265 * 179.72712 * 5 4 3 8 8 C 1.46500 * 120.00145 * 180.27860 * 7 5 4 9 9 C 1.53000 * 109.46841 * 294.74260 * 8 7 5 10 10 C 1.52995 * 109.47138 * 54.74123 * 8 7 5 11 11 C 1.50704 * 109.47032 * 174.74330 * 8 7 5 12 12 O 1.21279 * 119.99764 * 135.62457 * 11 8 7 13 13 N 1.34778 * 119.99697 * 315.62750 * 11 8 7 14 14 C 1.46493 * 120.00179 * 5.36495 * 13 11 8 15 15 C 1.46507 * 119.99509 * 185.37135 * 13 11 8 16 16 C 1.52995 * 109.47262 * 96.98478 * 15 13 11 17 17 H 1.09004 * 112.96593 * 52.03879 * 16 15 13 18 18 C 1.53944 * 113.77187 * 183.71861 * 16 15 13 19 19 C 1.53945 * 86.28987 * 137.90758 * 18 16 15 20 20 N 1.47578 * 86.11944 * 336.39520 * 19 18 16 21 21 C 1.36934 * 134.49205 * 204.64573 * 20 19 18 22 22 H 1.07999 * 119.99814 * 192.37996 * 21 20 19 23 23 C 1.38813 * 120.00414 * 12.36881 * 21 20 19 24 24 N 1.31621 * 119.99607 * 0.02562 * 23 21 20 25 25 Si 1.86795 * 120.00143 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.47093 * 90.00805 * 25 23 21 27 27 H 1.48508 * 109.47233 * 210.00274 * 25 23 21 28 28 H 1.48504 * 109.47459 * 330.00438 * 25 23 21 29 29 H 1.08001 * 119.99870 * 0.02562 * 1 2 3 30 30 H 1.07994 * 119.99464 * 180.02562 * 1 2 3 31 31 H 1.07994 * 120.00169 * 179.97438 * 2 1 3 32 32 H 1.08998 * 109.47289 * 4.99841 * 3 2 1 33 33 H 1.08998 * 109.46941 * 244.99699 * 3 2 1 34 34 H 0.97008 * 119.99667 * 0.02562 * 4 3 2 35 35 H 0.97007 * 119.99634 * 0.26975 * 7 5 4 36 36 H 1.08990 * 109.47172 * 59.99752 * 9 8 7 37 37 H 1.09001 * 109.46940 * 180.02562 * 9 8 7 38 38 H 1.09005 * 109.47206 * 299.99852 * 9 8 7 39 39 H 1.08996 * 109.47164 * 60.00502 * 10 8 7 40 40 H 1.09001 * 109.46774 * 179.97438 * 10 8 7 41 41 H 1.09004 * 109.47146 * 300.00131 * 10 8 7 42 42 H 1.09002 * 109.47033 * 90.09147 * 14 13 11 43 43 H 1.09006 * 109.46867 * 210.08217 * 14 13 11 44 44 H 1.08997 * 109.47576 * 330.08412 * 14 13 11 45 45 H 1.08995 * 109.46552 * 216.98628 * 15 13 11 46 46 H 1.09001 * 109.47189 * 336.98347 * 15 13 11 47 47 H 1.08996 * 113.74268 * 252.25572 * 18 16 15 48 48 H 1.09002 * 113.73967 * 23.45797 * 18 16 15 49 49 H 1.08999 * 113.77225 * 90.69900 * 19 18 16 50 50 H 1.09005 * 113.76897 * 221.98283 * 19 18 16 51 51 H 0.97002 * 119.99382 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9937 1.3321 1.1315 5 6 3.7789 2.4088 1.3330 6 8 3.7155 3.3577 0.5753 7 7 4.6307 2.4358 2.3770 8 6 5.4798 3.6087 2.5995 9 6 6.4704 3.7481 1.4419 10 6 4.6069 4.8628 2.6776 11 6 6.2373 3.4426 3.8917 12 8 7.4181 3.7149 3.9417 13 7 5.6026 2.9915 4.9917 14 6 4.2080 2.5514 4.9040 15 6 6.3072 2.9413 6.2752 16 6 5.9699 4.1906 7.0914 17 1 4.8973 4.3610 7.1844 18 6 6.7310 4.2839 8.4263 19 6 6.9191 5.7765 8.0998 20 7 6.7321 5.3883 6.6883 21 6 7.1130 5.9241 5.4871 22 1 6.6812 5.5534 4.5692 23 6 8.0539 6.9440 5.4491 24 7 8.5804 7.3956 6.5677 25 14 8.5729 7.6753 3.8105 26 1 7.6860 8.8183 3.4754 27 1 9.9774 8.1492 3.9024 28 1 8.4681 6.6402 2.7508 29 1 -0.5400 0.9353 -0.0004 30 1 -0.5399 -0.9353 0.0004 31 1 1.8501 -0.9352 0.0004 32 1 1.3585 2.1317 0.0895 33 1 2.6213 1.4027 -0.9313 34 1 3.0451 0.5745 1.7352 35 1 4.6815 1.6786 2.9812 36 1 5.9226 3.8682 0.5073 37 1 7.1025 4.6206 1.6076 38 1 7.0924 2.8546 1.3862 39 1 3.9012 4.7635 3.5023 40 1 5.2387 5.7354 2.8436 41 1 4.0590 4.9829 1.7430 42 1 4.1769 1.4865 4.6736 43 1 3.7096 2.7317 5.8565 44 1 3.7000 3.1085 4.1169 45 1 5.9970 2.0530 6.8254 46 1 7.3821 2.9022 6.0983 47 1 6.1069 4.1013 9.3010 48 1 7.6611 3.7157 8.4418 49 1 6.1258 6.4148 8.4887 50 1 7.9169 6.1532 8.3252 51 1 9.2382 8.1080 6.5410 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001488698673.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:41:33 Heat of formation + Delta-G solvation = 48.176327 kcal Electronic energy + Delta-G solvation = -31864.527811 eV Core-core repulsion = 27803.258865 eV Total energy + Delta-G solvation = -4061.268947 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.91849 -39.37495 -37.72716 -36.39833 -35.34122 -34.81422 -33.25314 -31.95682 -30.93139 -28.64564 -27.69089 -26.92542 -26.36004 -26.24176 -23.58293 -23.17370 -21.75278 -20.87474 -20.22325 -19.24489 -18.95590 -18.09843 -17.24928 -16.70235 -16.20308 -15.67164 -15.59911 -15.33922 -14.96212 -14.65893 -14.37295 -14.28111 -13.92833 -13.58763 -13.56460 -13.36518 -12.99538 -12.73088 -12.67085 -12.43206 -12.16259 -11.98892 -11.67580 -11.57591 -11.49983 -11.41812 -11.33239 -11.03100 -10.96073 -10.76610 -10.55466 -10.39226 -10.27280 -9.95104 -9.86538 -9.57453 -9.32004 -9.26040 -9.08442 -8.87954 -8.50613 -8.12602 -6.62402 -5.53292 -2.86776 1.62038 2.54923 3.11274 3.19147 3.40291 3.54044 3.60103 3.66143 4.14543 4.38695 4.59830 4.67123 4.68871 5.13688 5.19637 5.22856 5.24813 5.30041 5.33657 5.40442 5.42364 5.59894 5.68809 5.72798 5.84627 5.90533 5.98830 6.03034 6.05503 6.08111 6.08983 6.12053 6.14509 6.30844 6.38332 6.45239 6.53882 6.55291 6.60002 6.74389 6.77799 6.79183 6.98072 7.37906 7.58805 7.75773 7.82910 7.89730 8.24176 8.51406 8.69103 9.27667 9.95688 10.80623 11.62458 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.015572 B = 0.003536 C = 0.003059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1797.645183 B = 7915.911970 C = 9151.981157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.176 4.176 3 C 0.166 3.834 4 N -0.747 5.747 5 C 0.706 3.294 6 O -0.580 6.580 7 N -0.739 5.739 8 C 0.182 3.818 9 C -0.146 4.146 10 C -0.165 4.165 11 C 0.509 3.491 12 O -0.478 6.478 13 N -0.612 5.612 14 C 0.068 3.932 15 C 0.116 3.884 16 C 0.124 3.876 17 H 0.040 0.960 18 C -0.156 4.156 19 C 0.144 3.856 20 N -0.595 5.595 21 C -0.192 4.192 22 H 0.084 0.916 23 C -0.010 4.010 24 N -0.927 5.927 25 Si 0.897 3.103 26 H -0.294 1.294 27 H -0.293 1.293 28 H -0.273 1.273 29 H 0.101 0.899 30 H 0.102 0.898 31 H 0.114 0.886 32 H 0.070 0.930 33 H 0.074 0.926 34 H 0.395 0.605 35 H 0.397 0.603 36 H 0.076 0.924 37 H 0.077 0.923 38 H 0.055 0.945 39 H 0.059 0.941 40 H 0.075 0.925 41 H 0.094 0.906 42 H 0.044 0.956 43 H 0.068 0.932 44 H 0.083 0.917 45 H 0.063 0.937 46 H 0.093 0.907 47 H 0.047 0.953 48 H 0.074 0.926 49 H 0.018 0.982 50 H 0.084 0.916 51 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.312 -17.894 -6.860 24.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.194 4.194 3 C 0.042 3.958 4 N -0.403 5.403 5 C 0.406 3.594 6 O -0.458 6.458 7 N -0.399 5.399 8 C 0.092 3.908 9 C -0.205 4.205 10 C -0.223 4.223 11 C 0.294 3.706 12 O -0.348 6.348 13 N -0.346 5.346 14 C -0.075 4.075 15 C -0.008 4.008 16 C 0.015 3.985 17 H 0.058 0.942 18 C -0.195 4.195 19 C 0.019 3.981 20 N -0.320 5.320 21 C -0.320 4.320 22 H 0.101 0.899 23 C -0.205 4.205 24 N -0.575 5.575 25 Si 0.728 3.272 26 H -0.222 1.222 27 H -0.219 1.219 28 H -0.198 1.198 29 H 0.119 0.881 30 H 0.120 0.880 31 H 0.132 0.868 32 H 0.089 0.911 33 H 0.092 0.908 34 H 0.229 0.771 35 H 0.234 0.766 36 H 0.095 0.905 37 H 0.096 0.904 38 H 0.074 0.926 39 H 0.077 0.923 40 H 0.094 0.906 41 H 0.112 0.888 42 H 0.063 0.937 43 H 0.087 0.913 44 H 0.101 0.899 45 H 0.082 0.918 46 H 0.112 0.888 47 H 0.066 0.934 48 H 0.093 0.907 49 H 0.036 0.964 50 H 0.102 0.898 51 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -14.475 -16.617 -7.764 23.365 hybrid contribution 0.088 -0.275 -0.154 0.327 sum -14.386 -16.892 -7.918 23.558 Atomic orbital electron populations 1.23987 0.95793 1.02427 0.98188 1.23027 0.96216 0.98202 1.01986 1.20225 0.91182 0.95209 0.89139 1.45123 1.43158 1.19558 1.32470 1.15907 0.79012 0.82998 0.81457 1.90879 1.71652 1.35470 1.47795 1.45742 1.42835 1.20956 1.30320 1.20449 0.90360 0.86132 0.93809 1.22012 0.98044 1.03229 0.97202 1.22326 1.00032 0.95903 1.04009 1.20194 0.87760 0.78286 0.84402 1.90858 1.14586 1.45466 1.83850 1.47690 1.12460 1.65224 1.09270 1.22098 0.83401 0.98314 1.03721 1.21918 0.99015 0.97438 0.82396 1.22648 0.94995 0.88685 0.92135 0.94243 1.23752 0.99591 1.00872 0.95253 1.22381 1.00702 0.90749 0.84265 1.45930 1.60860 1.23259 1.01984 1.19145 1.15956 1.13479 0.83440 0.89883 1.24732 0.98859 1.00418 0.96494 1.69803 1.32412 1.30770 1.24534 0.86303 0.77705 0.78902 0.84294 1.22176 1.21931 1.19847 0.88092 0.87954 0.86778 0.91142 0.90803 0.77142 0.76593 0.90526 0.90388 0.92597 0.92255 0.90613 0.88784 0.93749 0.91277 0.89864 0.91845 0.88824 0.93419 0.90733 0.96448 0.89822 0.94197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.82 14.32 29.01 0.42 -0.41 16 2 C -0.18 -0.97 9.63 -36.03 -0.35 -1.32 16 3 C 0.17 1.31 6.11 -5.19 -0.03 1.28 16 4 N -0.75 -6.35 5.55 -66.41 -0.37 -6.72 16 5 C 0.71 8.72 7.99 -86.92 -0.69 8.03 16 6 O -0.58 -9.30 12.57 5.29 0.07 -9.23 16 7 N -0.74 -8.88 3.26 -53.50 -0.17 -9.06 16 8 C 0.18 2.93 0.63 -132.97 -0.08 2.84 16 9 C -0.15 -2.50 7.89 37.16 0.29 -2.21 16 10 C -0.16 -2.79 8.03 37.15 0.30 -2.50 16 11 C 0.51 9.48 4.69 -10.98 -0.05 9.43 16 12 O -0.48 -11.20 12.93 5.56 0.07 -11.13 16 13 N -0.61 -9.73 2.88 -181.57 -0.52 -10.25 16 14 C 0.07 0.76 8.75 59.84 0.52 1.28 16 15 C 0.12 1.99 5.39 -4.04 -0.02 1.97 16 16 C 0.12 2.45 4.53 -66.87 -0.30 2.14 16 17 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 18 C -0.16 -2.94 7.86 -25.81 -0.20 -3.14 16 19 C 0.14 3.47 7.85 -2.98 -0.02 3.44 16 20 N -0.59 -15.25 3.56 -170.74 -0.61 -15.86 16 21 C -0.19 -5.49 8.94 -15.06 -0.13 -5.62 16 22 H 0.08 2.32 4.10 -52.49 -0.21 2.10 16 23 C -0.01 -0.30 5.50 -17.43 -0.10 -0.39 16 24 N -0.93 -28.78 11.26 55.49 0.62 -28.15 16 25 Si 0.90 23.99 29.55 -169.99 -5.02 18.97 16 26 H -0.29 -7.76 7.11 56.52 0.40 -7.36 16 27 H -0.29 -7.90 7.11 56.52 0.40 -7.50 16 28 H -0.27 -7.22 7.11 56.52 0.40 -6.81 16 29 H 0.10 0.49 7.84 -52.49 -0.41 0.08 16 30 H 0.10 0.38 8.06 -52.49 -0.42 -0.04 16 31 H 0.11 0.51 8.06 -52.49 -0.42 0.09 16 32 H 0.07 0.62 7.79 -51.93 -0.40 0.21 16 33 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.40 2.29 8.48 -40.82 -0.35 1.95 16 35 H 0.40 3.85 5.83 -40.82 -0.24 3.61 16 36 H 0.08 1.28 6.56 -51.93 -0.34 0.94 16 37 H 0.08 1.51 7.93 -51.93 -0.41 1.10 16 38 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.06 0.95 6.29 -51.93 -0.33 0.62 16 40 H 0.07 1.47 7.60 -51.93 -0.39 1.08 16 41 H 0.09 1.60 5.80 -51.93 -0.30 1.29 16 42 H 0.04 0.35 7.01 -51.93 -0.36 -0.01 16 43 H 0.07 0.72 8.07 -51.93 -0.42 0.30 16 44 H 0.08 0.97 4.00 -51.93 -0.21 0.76 16 45 H 0.06 0.85 8.12 -51.93 -0.42 0.43 16 46 H 0.09 1.94 7.17 -51.93 -0.37 1.57 16 47 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 48 H 0.07 1.40 8.10 -51.93 -0.42 0.98 16 49 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 50 H 0.08 2.26 6.70 -51.93 -0.35 1.91 16 51 H 0.25 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 393.50 15.07 5.93 5.93 Total: -1.00 -36.25 393.50 -8.50 -44.75 By element: Atomic # 1 Polarization: 13.94 SS G_CDS: -8.04 Total: 5.90 kcal Atomic # 6 Polarization: 15.30 SS G_CDS: -0.46 Total: 14.84 kcal Atomic # 7 Polarization: -68.99 SS G_CDS: -1.05 Total: -70.04 kcal Atomic # 8 Polarization: -20.50 SS G_CDS: 0.14 Total: -20.36 kcal Atomic # 14 Polarization: 23.99 SS G_CDS: -5.02 Total: 18.97 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -36.25 -8.50 -44.75 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001488698673.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.931 kcal (2) G-P(sol) polarization free energy of solvation -36.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.754 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds