Wall clock time and date at job start Tue Mar 31 2020 21:41:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31005 * 1 3 3 C 1.50704 * 119.99609 * 2 1 4 4 N 1.46504 * 109.47127 * 124.99871 * 3 2 1 5 5 C 1.34775 * 120.00268 * 179.97438 * 4 3 2 6 6 O 1.21591 * 119.99630 * 359.97438 * 5 4 3 7 7 N 1.34772 * 120.00265 * 179.72712 * 5 4 3 8 8 C 1.46500 * 120.00145 * 180.27860 * 7 5 4 9 9 C 1.53000 * 109.46841 * 294.74260 * 8 7 5 10 10 C 1.52995 * 109.47138 * 54.74123 * 8 7 5 11 11 C 1.50704 * 109.47032 * 174.74330 * 8 7 5 12 12 O 1.21279 * 119.99764 * 135.62457 * 11 8 7 13 13 N 1.34778 * 119.99697 * 315.62750 * 11 8 7 14 14 C 1.46493 * 120.00179 * 5.36495 * 13 11 8 15 15 C 1.46507 * 119.99509 * 185.37135 * 13 11 8 16 16 C 1.52995 * 109.47262 * 96.98478 * 15 13 11 17 17 H 1.09004 * 112.96593 * 52.03879 * 16 15 13 18 18 C 1.53944 * 113.77187 * 183.71861 * 16 15 13 19 19 C 1.53945 * 86.28987 * 137.90758 * 18 16 15 20 20 N 1.47578 * 86.11944 * 336.39520 * 19 18 16 21 21 C 1.36934 * 134.49205 * 204.64573 * 20 19 18 22 22 H 1.07999 * 119.99814 * 192.37996 * 21 20 19 23 23 C 1.38813 * 120.00414 * 12.36881 * 21 20 19 24 24 N 1.31621 * 119.99607 * 0.02562 * 23 21 20 25 25 Si 1.86795 * 120.00143 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.47093 * 90.00805 * 25 23 21 27 27 H 1.48508 * 109.47233 * 210.00274 * 25 23 21 28 28 H 1.48504 * 109.47459 * 330.00438 * 25 23 21 29 29 H 1.08001 * 119.99870 * 0.02562 * 1 2 3 30 30 H 1.07994 * 119.99464 * 180.02562 * 1 2 3 31 31 H 1.07994 * 120.00169 * 179.97438 * 2 1 3 32 32 H 1.08998 * 109.47289 * 4.99841 * 3 2 1 33 33 H 1.08998 * 109.46941 * 244.99699 * 3 2 1 34 34 H 0.97008 * 119.99667 * 0.02562 * 4 3 2 35 35 H 0.97007 * 119.99634 * 0.26975 * 7 5 4 36 36 H 1.08990 * 109.47172 * 59.99752 * 9 8 7 37 37 H 1.09001 * 109.46940 * 180.02562 * 9 8 7 38 38 H 1.09005 * 109.47206 * 299.99852 * 9 8 7 39 39 H 1.08996 * 109.47164 * 60.00502 * 10 8 7 40 40 H 1.09001 * 109.46774 * 179.97438 * 10 8 7 41 41 H 1.09004 * 109.47146 * 300.00131 * 10 8 7 42 42 H 1.09002 * 109.47033 * 90.09147 * 14 13 11 43 43 H 1.09006 * 109.46867 * 210.08217 * 14 13 11 44 44 H 1.08997 * 109.47576 * 330.08412 * 14 13 11 45 45 H 1.08995 * 109.46552 * 216.98628 * 15 13 11 46 46 H 1.09001 * 109.47189 * 336.98347 * 15 13 11 47 47 H 1.08996 * 113.74268 * 252.25572 * 18 16 15 48 48 H 1.09002 * 113.73967 * 23.45797 * 18 16 15 49 49 H 1.08999 * 113.77225 * 90.69900 * 19 18 16 50 50 H 1.09005 * 113.76897 * 221.98283 * 19 18 16 51 51 H 0.97002 * 119.99382 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9937 1.3321 1.1315 5 6 3.7789 2.4088 1.3330 6 8 3.7155 3.3577 0.5753 7 7 4.6307 2.4358 2.3770 8 6 5.4798 3.6087 2.5995 9 6 6.4704 3.7481 1.4419 10 6 4.6069 4.8628 2.6776 11 6 6.2373 3.4426 3.8917 12 8 7.4181 3.7149 3.9417 13 7 5.6026 2.9915 4.9917 14 6 4.2080 2.5514 4.9040 15 6 6.3072 2.9413 6.2752 16 6 5.9699 4.1906 7.0914 17 1 4.8973 4.3610 7.1844 18 6 6.7310 4.2839 8.4263 19 6 6.9191 5.7765 8.0998 20 7 6.7321 5.3883 6.6883 21 6 7.1130 5.9241 5.4871 22 1 6.6812 5.5534 4.5692 23 6 8.0539 6.9440 5.4491 24 7 8.5804 7.3956 6.5677 25 14 8.5729 7.6753 3.8105 26 1 7.6860 8.8183 3.4754 27 1 9.9774 8.1492 3.9024 28 1 8.4681 6.6402 2.7508 29 1 -0.5400 0.9353 -0.0004 30 1 -0.5399 -0.9353 0.0004 31 1 1.8501 -0.9352 0.0004 32 1 1.3585 2.1317 0.0895 33 1 2.6213 1.4027 -0.9313 34 1 3.0451 0.5745 1.7352 35 1 4.6815 1.6786 2.9812 36 1 5.9226 3.8682 0.5073 37 1 7.1025 4.6206 1.6076 38 1 7.0924 2.8546 1.3862 39 1 3.9012 4.7635 3.5023 40 1 5.2387 5.7354 2.8436 41 1 4.0590 4.9829 1.7430 42 1 4.1769 1.4865 4.6736 43 1 3.7096 2.7317 5.8565 44 1 3.7000 3.1085 4.1169 45 1 5.9970 2.0530 6.8254 46 1 7.3821 2.9022 6.0983 47 1 6.1069 4.1013 9.3010 48 1 7.6611 3.7157 8.4418 49 1 6.1258 6.4148 8.4887 50 1 7.9169 6.1532 8.3252 51 1 9.2382 8.1080 6.5410 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001488698673.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:41:32 Heat of formation + Delta-G solvation = 21.454322 kcal Electronic energy + Delta-G solvation = -31865.686565 eV Core-core repulsion = 27803.258865 eV Total energy + Delta-G solvation = -4062.427700 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.13328 -40.61223 -39.39125 -37.34072 -36.59542 -36.01521 -34.09516 -34.02037 -31.96936 -30.12235 -29.64413 -28.33742 -27.52378 -26.95365 -25.19390 -25.03053 -23.11623 -21.75184 -20.94250 -20.72930 -20.47578 -19.10574 -18.79186 -18.26101 -17.24283 -17.04300 -16.74406 -16.54637 -16.35485 -15.86486 -15.79886 -15.62854 -15.40630 -15.05581 -14.81136 -14.42122 -14.20419 -14.05267 -13.75799 -13.49188 -13.48510 -13.44356 -13.19405 -13.02026 -12.98321 -12.89831 -12.80541 -12.53750 -12.39521 -12.34248 -12.30303 -11.97404 -11.72575 -11.40225 -11.38551 -11.21031 -10.73261 -10.58976 -10.44090 -10.25537 -9.78998 -9.50980 -8.67635 -7.77385 -5.07943 1.08407 1.35480 1.37986 1.49591 1.50326 1.92075 2.11425 2.18361 2.52322 3.27254 3.32542 3.45773 3.51728 3.88002 3.90661 3.92604 4.03132 4.24128 4.29500 4.32418 4.42803 4.49953 4.57061 4.61589 4.64409 4.65273 4.73472 4.75275 4.79015 4.82676 4.94011 4.97632 5.05220 5.07911 5.11327 5.17412 5.19384 5.33547 5.45662 5.48940 5.65334 5.70766 5.74883 5.84172 5.85267 5.96032 6.13113 6.45644 7.06414 7.07818 7.28364 7.58462 7.77984 8.70222 9.38472 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.015572 B = 0.003536 C = 0.003059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1797.645183 B = 7915.911970 C = 9151.981157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.179 4.179 3 C 0.166 3.834 4 N -0.726 5.726 5 C 0.705 3.295 6 O -0.619 6.619 7 N -0.723 5.723 8 C 0.193 3.807 9 C -0.140 4.140 10 C -0.156 4.156 11 C 0.506 3.494 12 O -0.537 6.537 13 N -0.606 5.606 14 C 0.059 3.941 15 C 0.121 3.879 16 C 0.126 3.874 17 H 0.062 0.938 18 C -0.126 4.126 19 C 0.130 3.870 20 N -0.627 5.627 21 C -0.169 4.169 22 H 0.086 0.914 23 C -0.077 4.077 24 N -0.959 5.959 25 Si 0.940 3.060 26 H -0.290 1.290 27 H -0.299 1.299 28 H -0.275 1.275 29 H 0.098 0.902 30 H 0.119 0.881 31 H 0.130 0.870 32 H 0.060 0.940 33 H 0.062 0.938 34 H 0.413 0.587 35 H 0.412 0.588 36 H 0.078 0.922 37 H 0.045 0.955 38 H 0.060 0.940 39 H 0.071 0.929 40 H 0.041 0.959 41 H 0.094 0.906 42 H 0.089 0.911 43 H 0.088 0.912 44 H 0.078 0.922 45 H 0.118 0.882 46 H 0.054 0.946 47 H 0.093 0.907 48 H 0.074 0.926 49 H 0.017 0.983 50 H 0.044 0.956 51 H 0.238 0.762 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.604 -21.732 -6.334 29.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.197 4.197 3 C 0.042 3.958 4 N -0.383 5.383 5 C 0.405 3.595 6 O -0.499 6.499 7 N -0.384 5.384 8 C 0.103 3.897 9 C -0.198 4.198 10 C -0.214 4.214 11 C 0.292 3.708 12 O -0.412 6.412 13 N -0.339 5.339 14 C -0.083 4.083 15 C -0.002 4.002 16 C 0.019 3.981 17 H 0.079 0.921 18 C -0.164 4.164 19 C 0.005 3.995 20 N -0.353 5.353 21 C -0.299 4.299 22 H 0.103 0.897 23 C -0.268 4.268 24 N -0.611 5.611 25 Si 0.771 3.229 26 H -0.218 1.218 27 H -0.226 1.226 28 H -0.201 1.201 29 H 0.117 0.883 30 H 0.137 0.863 31 H 0.147 0.853 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.249 0.751 35 H 0.252 0.748 36 H 0.097 0.903 37 H 0.064 0.936 38 H 0.079 0.921 39 H 0.089 0.911 40 H 0.060 0.940 41 H 0.113 0.887 42 H 0.107 0.893 43 H 0.106 0.894 44 H 0.096 0.904 45 H 0.136 0.864 46 H 0.073 0.927 47 H 0.112 0.888 48 H 0.092 0.908 49 H 0.035 0.965 50 H 0.063 0.937 51 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -17.867 -20.564 -7.211 28.180 hybrid contribution 0.935 0.794 -0.311 1.265 sum -16.932 -19.771 -7.522 27.095 Atomic orbital electron populations 1.24163 0.95680 1.03168 0.96728 1.22928 0.96264 0.97355 1.03187 1.20260 0.90795 0.96479 0.88275 1.44957 1.41890 1.18807 1.32660 1.16019 0.79176 0.83380 0.80916 1.90864 1.72748 1.37250 1.49044 1.45348 1.42158 1.20122 1.30812 1.20037 0.90181 0.87282 0.92245 1.21915 0.98016 1.02031 0.97887 1.22217 0.99597 0.95063 1.04475 1.20575 0.87223 0.77370 0.85672 1.90838 1.17165 1.48255 1.84910 1.47785 1.14262 1.63904 1.07995 1.22447 0.80205 1.00826 1.04816 1.21784 0.97239 0.98210 0.83012 1.22915 0.95324 0.87368 0.92457 0.92109 1.23479 1.00197 0.96134 0.96625 1.22393 0.98560 0.94396 0.84160 1.46351 1.61715 1.25631 1.01582 1.19425 1.13935 1.11517 0.85001 0.89686 1.25327 1.00594 1.02393 0.98496 1.69968 1.33786 1.31789 1.25595 0.85593 0.77016 0.78288 0.82002 1.21787 1.22576 1.20064 0.88346 0.86282 0.85255 0.92139 0.92005 0.75094 0.74795 0.90283 0.93587 0.92059 0.91052 0.93968 0.88738 0.89266 0.89370 0.90387 0.86377 0.92695 0.88846 0.90778 0.96538 0.93747 0.95286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.09 14.32 67.78 0.97 -0.12 16 2 C -0.18 -1.44 9.63 25.64 0.25 -1.19 16 3 C 0.17 2.28 6.11 85.63 0.52 2.80 16 4 N -0.73 -10.21 5.55 -482.29 -2.68 -12.89 16 5 C 0.70 15.90 7.99 179.06 1.43 17.33 16 6 O -0.62 -19.26 12.57 -4.00 -0.05 -19.31 16 7 N -0.72 -15.57 3.26 -441.45 -1.44 -17.00 16 8 C 0.19 6.09 0.63 2.86 0.00 6.09 16 9 C -0.14 -4.88 7.89 71.98 0.57 -4.31 16 10 C -0.16 -5.26 8.03 71.98 0.58 -4.68 16 11 C 0.51 18.46 4.69 87.66 0.41 18.87 16 12 O -0.54 -25.75 12.93 -3.03 -0.04 -25.78 16 13 N -0.61 -17.46 2.88 -846.76 -2.43 -19.89 16 14 C 0.06 1.01 8.75 127.77 1.12 2.12 16 15 C 0.12 3.77 5.39 86.38 0.47 4.23 16 16 C 0.13 4.60 4.53 45.09 0.20 4.80 16 17 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 18 C -0.13 -4.38 7.86 31.25 0.25 -4.13 16 19 C 0.13 6.27 7.85 86.48 0.68 6.95 16 20 N -0.63 -32.12 3.56 -694.11 -2.47 -34.59 16 21 C -0.17 -9.89 8.94 84.03 0.75 -9.14 16 22 H 0.09 4.87 4.10 -2.91 -0.01 4.86 16 23 C -0.08 -4.81 5.50 84.86 0.47 -4.34 16 24 N -0.96 -62.36 11.26 21.65 0.24 -62.12 16 25 Si 0.94 51.75 29.55 68.60 2.03 53.78 16 26 H -0.29 -15.52 7.11 99.48 0.71 -14.82 16 27 H -0.30 -16.54 7.11 99.48 0.71 -15.83 16 28 H -0.28 -15.03 7.11 99.48 0.71 -14.32 16 29 H 0.10 0.73 7.84 -2.91 -0.02 0.70 16 30 H 0.12 0.45 8.06 -2.91 -0.02 0.43 16 31 H 0.13 0.68 8.06 -2.91 -0.02 0.65 16 32 H 0.06 0.97 7.79 -2.39 -0.02 0.95 16 33 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 34 H 0.41 3.05 8.48 -92.70 -0.79 2.26 16 35 H 0.41 6.31 5.83 -92.70 -0.54 5.76 16 36 H 0.08 2.69 6.56 -2.39 -0.02 2.67 16 37 H 0.05 1.88 7.93 -2.39 -0.02 1.86 16 38 H 0.06 2.02 8.14 -2.38 -0.02 2.00 16 39 H 0.07 2.18 6.29 -2.39 -0.02 2.17 16 40 H 0.04 1.69 7.60 -2.39 -0.02 1.67 16 41 H 0.09 3.21 5.80 -2.38 -0.01 3.20 16 42 H 0.09 0.81 7.01 -2.39 -0.02 0.79 16 43 H 0.09 1.27 8.07 -2.38 -0.02 1.26 16 44 H 0.08 1.48 4.00 -2.39 -0.01 1.47 16 45 H 0.12 2.46 8.12 -2.39 -0.02 2.44 16 46 H 0.05 2.20 7.17 -2.39 -0.02 2.19 16 47 H 0.09 2.47 8.14 -2.39 -0.02 2.45 16 48 H 0.07 2.61 8.10 -2.39 -0.02 2.59 16 49 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 50 H 0.04 2.49 6.70 -2.38 -0.02 2.47 16 51 H 0.24 15.27 8.31 -92.71 -0.77 14.50 16 Total: -1.00 -85.79 393.50 1.45 -84.34 By element: Atomic # 1 Polarization: 18.56 SS G_CDS: -0.37 Total: 18.19 kcal Atomic # 6 Polarization: 26.61 SS G_CDS: 8.66 Total: 35.27 kcal Atomic # 7 Polarization: -137.71 SS G_CDS: -8.78 Total: -146.49 kcal Atomic # 8 Polarization: -45.01 SS G_CDS: -0.09 Total: -45.10 kcal Atomic # 14 Polarization: 51.75 SS G_CDS: 2.03 Total: 53.78 kcal Total: -85.79 1.45 -84.34 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001488698673.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.798 kcal (2) G-P(sol) polarization free energy of solvation -85.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.343 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds