Wall clock time and date at job start Tue Mar 31 2020 21:18:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52992 * 109.47060 * 2 1 4 4 C 1.53005 * 109.46767 * 119.99605 * 2 1 3 5 5 C 1.53002 * 109.47146 * 66.12618 * 4 2 1 6 6 H 1.09000 * 109.46971 * 304.06698 * 5 4 2 7 7 C 1.53001 * 109.47122 * 64.06317 * 5 4 2 8 8 N 1.46499 * 109.46975 * 174.99980 * 7 5 4 9 9 C 1.36935 * 120.00363 * 180.02562 * 8 7 5 10 10 H 1.07996 * 119.99786 * 359.97438 * 9 8 7 11 11 C 1.38807 * 120.00297 * 180.02562 * 9 8 7 12 12 N 1.31616 * 120.00375 * 359.97438 * 11 9 8 13 13 Si 1.86801 * 120.00007 * 180.02562 * 11 9 8 14 14 H 1.48497 * 109.47250 * 89.99934 * 13 11 9 15 15 H 1.48500 * 109.47008 * 209.99906 * 13 11 9 16 16 H 1.48498 * 109.47099 * 330.00022 * 13 11 9 17 17 N 1.46491 * 109.47327 * 184.06839 * 5 4 2 18 18 C 1.34780 * 120.00529 * 88.05729 * 17 5 4 19 19 O 1.21496 * 119.99459 * 354.78467 * 18 17 5 20 20 C 1.48332 * 120.00220 * 174.78268 * 18 17 5 21 21 C 1.42268 * 126.93652 * 180.02562 * 20 18 17 22 22 C 1.35311 * 103.92425 * 179.75518 * 21 20 18 23 23 C 1.50699 * 126.67055 * 180.19986 * 22 21 20 24 24 N 1.46904 * 109.46744 * 89.99989 * 23 22 21 25 25 C 1.46904 * 111.00035 * 170.00045 * 24 23 22 26 26 C 1.46899 * 111.00319 * 293.95566 * 24 23 22 27 27 O 1.34024 * 106.66518 * 0.22550 * 22 21 20 28 28 N 1.20906 * 111.84643 * 359.97438 * 27 22 21 29 29 H 1.08998 * 109.47246 * 63.66371 * 1 2 3 30 30 H 1.09001 * 109.47159 * 183.66799 * 1 2 3 31 31 H 1.09002 * 109.47531 * 303.66389 * 1 2 3 32 32 H 1.08995 * 109.46651 * 239.99317 * 2 1 3 33 33 H 1.09001 * 109.47202 * 179.97438 * 3 2 1 34 34 H 1.09007 * 109.46956 * 299.99431 * 3 2 1 35 35 H 1.08996 * 109.47508 * 59.99475 * 3 2 1 36 36 H 1.08994 * 109.47521 * 306.12137 * 4 2 1 37 37 H 1.08999 * 109.46604 * 186.11883 * 4 2 1 38 38 H 1.08997 * 109.47083 * 295.00059 * 7 5 4 39 39 H 1.08997 * 109.47123 * 55.00456 * 7 5 4 40 40 H 0.97007 * 120.00362 * 0.02562 * 8 7 5 41 41 H 0.97000 * 120.00562 * 179.97438 * 12 11 9 42 42 H 0.97005 * 119.99911 * 268.06336 * 17 5 4 43 43 H 1.08007 * 128.03848 * 0.02562 * 21 20 18 44 44 H 1.09000 * 109.47370 * 209.99874 * 23 22 21 45 45 H 1.08993 * 109.47393 * 330.00700 * 23 22 21 46 46 H 1.08994 * 109.46539 * 59.99851 * 25 24 23 47 47 H 1.08996 * 109.46952 * 180.02562 * 25 24 23 48 48 H 1.08998 * 109.46830 * 300.00364 * 25 24 23 49 49 H 1.09004 * 109.46715 * 59.99775 * 26 24 23 50 50 H 1.09002 * 109.47372 * 179.97438 * 26 24 23 51 51 H 1.08994 * 109.47296 * 300.00368 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7212 1.2494 5 6 1.6595 -2.2013 1.1749 6 1 0.5811 -2.2931 1.0456 7 6 2.3726 -2.8521 -0.0121 8 7 2.1037 -4.2922 -0.0135 9 6 2.6416 -5.0882 -0.9893 10 1 3.2637 -4.6543 -1.7581 11 6 2.3864 -6.4526 -0.9909 12 7 1.6278 -6.9814 -0.0543 13 14 3.1208 -7.5386 -2.3216 14 1 4.4463 -8.0389 -1.8767 15 1 2.2173 -8.6894 -2.5759 16 1 3.2826 -6.7509 -3.5700 17 7 2.0617 -2.8719 2.4136 18 6 1.2213 -2.9026 3.4669 19 8 0.1704 -2.2943 3.4234 20 6 1.5793 -3.6789 4.6791 21 6 0.8082 -3.8130 5.8671 22 6 1.5610 -4.6151 6.6550 23 6 1.2181 -5.0918 8.0429 24 7 0.4820 -6.3602 7.9571 25 6 0.3370 -6.9756 9.2831 26 6 -0.8276 -6.1669 7.3204 27 8 2.6712 -4.9029 5.9615 28 7 2.6702 -4.3776 4.8725 29 1 -0.3633 0.4559 -0.9210 30 1 -0.3633 -1.0256 0.0657 31 1 -0.3634 0.5697 0.8553 32 1 1.8933 -0.5139 -0.8899 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9562 -0.8901 35 1 1.6766 1.9563 0.8899 36 1 1.5899 -0.2745 2.1359 37 1 3.1244 -0.6273 1.3058 38 1 2.0071 -2.4133 -0.9406 39 1 3.4461 -2.6830 0.0718 40 1 1.5446 -4.6819 0.6768 41 1 1.4491 -7.9348 -0.0556 42 1 2.9329 -3.2938 2.4759 43 1 -0.1562 -3.3794 6.0871 44 1 2.1352 -5.2418 8.6126 45 1 0.5990 -4.3456 8.5408 46 1 -0.2088 -6.2985 9.9400 47 1 -0.2110 -7.9132 9.1905 48 1 1.3238 -7.1717 9.7024 49 1 -0.6874 -5.7752 6.3128 50 1 -1.3512 -7.1215 7.2691 51 1 -1.4157 -5.4605 7.9062 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001496281747.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:18:02 Heat of formation + Delta-G solvation = 10.020577 kcal Electronic energy + Delta-G solvation = -30004.749614 eV Core-core repulsion = 25941.826110 eV Total energy + Delta-G solvation = -4062.923504 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -46.19685 -41.05588 -38.62710 -38.55058 -36.39167 -35.34479 -34.99165 -33.52052 -32.89571 -30.62135 -28.60396 -28.31040 -28.01658 -27.26585 -26.14219 -24.55174 -23.94592 -23.24760 -22.47613 -21.20512 -20.62095 -19.26813 -18.94061 -18.64554 -18.03611 -17.33799 -16.86901 -16.31054 -16.23766 -16.17073 -16.05354 -15.82483 -15.36280 -15.31144 -15.07061 -14.76994 -14.56492 -14.28446 -14.08110 -13.84679 -13.45458 -13.31614 -13.17704 -12.95638 -12.86704 -12.80345 -12.78578 -12.68385 -12.57041 -12.39308 -12.25179 -12.07726 -11.96580 -11.81487 -11.64734 -11.55923 -11.46754 -11.28895 -10.96435 -10.65125 -10.15995 -9.36616 -9.04913 -7.96716 -5.27296 0.02569 0.55961 1.45386 1.47551 1.55901 1.76280 1.96291 2.07674 2.53606 2.85619 3.04593 3.37215 3.42640 3.66586 3.82480 3.87001 4.01670 4.02584 4.10027 4.15299 4.15721 4.24756 4.34163 4.42731 4.50913 4.53181 4.58268 4.71626 4.73638 4.76356 4.80201 4.84678 4.85755 4.90521 4.94835 5.03241 5.03716 5.07423 5.11261 5.11279 5.32667 5.38199 5.47490 5.47818 5.53267 5.91678 6.01622 6.22755 6.25523 6.85749 7.03092 7.29800 8.02348 8.26149 9.26490 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.007372 B = 0.003556 C = 0.002571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3797.219456 B = 7871.836648 C =10886.348784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.096 4.096 3 C -0.139 4.139 4 C -0.108 4.108 5 C 0.144 3.856 6 H 0.072 0.928 7 C 0.146 3.854 8 N -0.744 5.744 9 C -0.245 4.245 10 H 0.081 0.919 11 C -0.074 4.074 12 N -0.970 5.970 13 Si 0.975 3.025 14 H -0.287 1.287 15 H -0.297 1.297 16 H -0.266 1.266 17 N -0.694 5.694 18 C 0.597 3.403 19 O -0.553 6.553 20 C -0.049 4.049 21 C -0.179 4.179 22 C -0.012 4.012 23 C 0.136 3.864 24 N -0.568 5.568 25 C 0.027 3.973 26 C 0.016 3.984 27 O 0.134 5.866 28 N -0.345 5.345 29 H 0.066 0.934 30 H 0.036 0.964 31 H 0.054 0.946 32 H 0.073 0.927 33 H 0.060 0.940 34 H 0.065 0.935 35 H 0.055 0.945 36 H 0.062 0.938 37 H 0.076 0.924 38 H 0.047 0.953 39 H 0.035 0.965 40 H 0.371 0.629 41 H 0.250 0.750 42 H 0.408 0.592 43 H 0.193 0.807 44 H 0.124 0.876 45 H 0.101 0.899 46 H 0.045 0.955 47 H 0.072 0.928 48 H 0.083 0.917 49 H 0.048 0.952 50 H 0.074 0.926 51 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.315 10.800 18.444 21.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.115 4.115 3 C -0.196 4.196 4 C -0.147 4.147 5 C 0.040 3.960 6 H 0.090 0.910 7 C 0.019 3.981 8 N -0.387 5.387 9 C -0.377 4.377 10 H 0.099 0.901 11 C -0.267 4.267 12 N -0.620 5.620 13 Si 0.804 3.196 14 H -0.214 1.214 15 H -0.224 1.224 16 H -0.191 1.191 17 N -0.343 5.343 18 C 0.381 3.619 19 O -0.431 6.431 20 C -0.207 4.207 21 C -0.203 4.203 22 C -0.076 4.076 23 C 0.008 3.992 24 N -0.294 5.294 25 C -0.120 4.120 26 C -0.132 4.132 27 O 0.055 5.945 28 N -0.043 5.043 29 H 0.085 0.915 30 H 0.055 0.945 31 H 0.074 0.926 32 H 0.092 0.908 33 H 0.079 0.921 34 H 0.084 0.916 35 H 0.074 0.926 36 H 0.080 0.920 37 H 0.095 0.905 38 H 0.065 0.935 39 H 0.053 0.947 40 H 0.203 0.797 41 H 0.058 0.942 42 H 0.243 0.757 43 H 0.211 0.789 44 H 0.143 0.857 45 H 0.118 0.882 46 H 0.063 0.937 47 H 0.091 0.909 48 H 0.101 0.899 49 H 0.067 0.933 50 H 0.092 0.908 51 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -0.627 10.690 17.097 20.174 hybrid contribution -0.840 -0.645 0.048 1.060 sum -1.467 10.045 17.145 19.925 Atomic orbital electron populations 1.21862 0.95468 1.00998 1.02060 1.21144 0.95865 0.97224 0.97252 1.21771 1.01219 0.94362 1.02235 1.21893 1.01712 0.92012 0.99115 1.21352 0.99738 0.92763 0.82179 0.90964 1.21175 0.97428 0.83906 0.95556 1.42535 1.60483 1.02998 1.32650 1.19637 1.23522 0.89793 1.04709 0.90143 1.25598 1.01464 0.98409 1.01194 1.69848 1.43747 1.11414 1.37024 0.85118 0.77162 0.78252 0.79077 1.21391 1.22424 1.19111 1.45876 1.19606 1.55985 1.12869 1.17097 0.83507 0.79581 0.81677 1.90727 1.24910 1.45551 1.81921 1.23521 0.94616 1.03632 0.98894 1.22605 1.03187 1.03397 0.91066 1.24836 0.86650 0.97816 0.98279 1.20760 1.01470 0.91697 0.85304 1.61839 1.19485 1.24106 1.23955 1.22443 1.03210 0.99370 0.86951 1.22496 0.89403 1.02196 0.99089 1.84766 1.37740 1.52870 1.19075 1.74244 1.21402 1.09227 0.99467 0.91519 0.94483 0.92646 0.90836 0.92083 0.91622 0.92574 0.91963 0.90533 0.93488 0.94746 0.79740 0.94166 0.75690 0.78948 0.85749 0.88168 0.93683 0.90872 0.89863 0.93292 0.90751 0.93261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.77 9.05 71.98 0.65 -3.12 16 2 C -0.10 -2.36 2.78 -10.79 -0.03 -2.39 16 3 C -0.14 -2.67 9.19 71.98 0.66 -2.01 16 4 C -0.11 -3.04 4.47 30.60 0.14 -2.90 16 5 C 0.14 5.12 2.08 44.99 0.09 5.21 16 6 H 0.07 2.92 5.77 -2.39 -0.01 2.90 16 7 C 0.15 5.86 5.45 86.38 0.47 6.33 16 8 N -0.74 -38.75 5.43 -343.47 -1.87 -40.61 16 9 C -0.25 -13.87 9.99 84.03 0.84 -13.03 16 10 H 0.08 4.30 7.83 -2.91 -0.02 4.28 16 11 C -0.07 -4.37 5.50 84.86 0.47 -3.91 16 12 N -0.97 -61.51 13.06 21.65 0.28 -61.23 16 13 Si 0.98 47.11 29.55 68.60 2.03 49.14 16 14 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 15 H -0.30 -14.54 7.11 99.48 0.71 -13.84 16 16 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 17 N -0.69 -25.73 4.48 -444.95 -1.99 -27.72 16 18 C 0.60 22.70 7.83 86.93 0.68 23.38 16 19 O -0.55 -22.74 16.62 -3.70 -0.06 -22.80 16 20 C -0.05 -1.68 7.19 42.96 0.31 -1.37 16 21 C -0.18 -4.71 9.58 22.60 0.22 -4.49 16 22 C -0.01 -0.27 6.34 25.01 0.16 -0.11 16 23 C 0.14 1.85 5.53 85.56 0.47 2.33 16 24 N -0.57 -9.38 5.01 -953.48 -4.78 -14.16 16 25 C 0.03 0.28 9.57 127.69 1.22 1.50 16 26 C 0.02 0.28 9.29 127.69 1.19 1.47 16 27 O 0.13 3.89 11.18 71.80 0.80 4.69 16 28 N -0.35 -11.90 11.85 -49.52 -0.59 -12.48 16 29 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 30 H 0.04 1.12 6.36 -2.39 -0.02 1.11 16 31 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.07 1.90 6.37 -2.39 -0.02 1.88 16 33 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.06 1.12 8.14 -2.38 -0.02 1.10 16 35 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 37 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 38 H 0.05 1.84 6.66 -2.39 -0.02 1.82 16 39 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 40 H 0.37 21.25 7.33 -92.70 -0.68 20.57 16 41 H 0.25 15.40 8.31 -92.71 -0.77 14.63 16 42 H 0.41 15.35 8.40 -92.70 -0.78 14.57 16 43 H 0.19 4.25 8.06 -2.91 -0.02 4.22 16 44 H 0.12 1.17 8.06 -2.39 -0.02 1.15 16 45 H 0.10 0.87 8.12 -2.39 -0.02 0.85 16 46 H 0.04 0.33 8.14 -2.39 -0.02 0.31 16 47 H 0.07 0.77 8.12 -2.39 -0.02 0.75 16 48 H 0.08 0.68 8.12 -2.39 -0.02 0.66 16 49 H 0.05 1.10 6.34 -2.38 -0.02 1.08 16 50 H 0.07 1.24 8.12 -2.39 -0.02 1.22 16 51 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 Total: -1.00 -73.51 415.74 0.84 -72.67 By element: Atomic # 1 Polarization: 46.15 SS G_CDS: -0.52 Total: 45.62 kcal Atomic # 6 Polarization: -0.65 SS G_CDS: 7.54 Total: 6.88 kcal Atomic # 7 Polarization: -147.27 SS G_CDS: -8.94 Total: -156.21 kcal Atomic # 8 Polarization: -18.85 SS G_CDS: 0.74 Total: -18.11 kcal Atomic # 14 Polarization: 47.11 SS G_CDS: 2.03 Total: 49.14 kcal Total: -73.51 0.84 -72.67 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496281747.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.693 kcal (2) G-P(sol) polarization free energy of solvation -73.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.673 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds