Wall clock time and date at job start Tue Mar 31 2020 21:21:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52993 * 109.47568 * 2 1 4 4 C 1.53001 * 109.47747 * 175.50286 * 3 2 1 5 5 C 1.53007 * 109.46755 * 294.18079 * 4 3 2 6 6 N 1.46501 * 109.47226 * 295.50153 * 3 2 1 7 7 N 1.28443 * 125.18931 * 305.59824 * 6 3 2 8 8 C 1.30870 * 110.92898 * 180.02562 * 7 6 3 9 9 C 1.50696 * 126.07057 * 180.02562 * 8 7 6 10 10 C 1.39676 * 107.85627 * 359.77351 * 8 7 6 11 11 C 1.36602 * 125.19113 * 125.61481 * 6 3 2 12 12 C 1.47160 * 126.88422 * 359.94983 * 11 6 3 13 13 O 1.21627 * 120.00287 * 5.95361 * 12 11 6 14 14 N 1.34774 * 120.00206 * 185.95705 * 12 11 6 15 15 C 1.46496 * 120.00409 * 175.04742 * 14 12 11 16 16 C 1.52999 * 109.47532 * 180.02562 * 15 14 12 17 17 H 1.09004 * 109.47181 * 64.99866 * 16 15 14 18 18 C 1.52993 * 109.47490 * 185.00212 * 16 15 14 19 19 O 1.42907 * 109.47334 * 54.99610 * 18 16 15 20 20 N 1.46501 * 109.46685 * 305.00174 * 16 15 14 21 21 C 1.36942 * 119.99808 * 155.00333 * 20 16 15 22 22 H 1.08000 * 120.00109 * 359.97438 * 21 20 16 23 23 C 1.38810 * 119.99765 * 180.02562 * 21 20 16 24 24 N 1.31618 * 120.00262 * 359.71876 * 23 21 20 25 25 Si 1.86803 * 119.99622 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.46870 * 179.72610 * 25 23 21 27 27 H 1.48501 * 109.47288 * 299.71954 * 25 23 21 28 28 H 1.48502 * 109.47367 * 59.72104 * 25 23 21 29 29 H 1.08999 * 109.46944 * 185.03117 * 1 2 3 30 30 H 1.09002 * 109.47196 * 305.03747 * 1 2 3 31 31 H 1.09007 * 109.46933 * 65.03415 * 1 2 3 32 32 H 1.08996 * 109.47355 * 239.99536 * 2 1 3 33 33 H 1.09007 * 109.46865 * 119.99691 * 2 1 3 34 34 H 1.09001 * 109.47082 * 55.50036 * 3 2 1 35 35 H 1.09005 * 109.46756 * 54.17429 * 4 3 2 36 36 H 1.08998 * 109.47671 * 174.17890 * 4 3 2 37 37 H 1.08998 * 109.46485 * 185.52785 * 5 4 3 38 38 H 1.08995 * 109.46972 * 305.53004 * 5 4 3 39 39 H 1.08996 * 109.46910 * 65.52832 * 5 4 3 40 40 H 1.09003 * 109.46763 * 89.98166 * 9 8 7 41 41 H 1.09000 * 109.47039 * 209.97688 * 9 8 7 42 42 H 1.08993 * 109.47062 * 329.98011 * 9 8 7 43 43 H 1.08004 * 127.31848 * 180.26491 * 10 8 7 44 44 H 0.97002 * 120.00121 * 355.05489 * 14 12 11 45 45 H 1.08999 * 109.47225 * 60.00005 * 15 14 12 46 46 H 1.09002 * 109.47021 * 300.00070 * 15 14 12 47 47 H 1.09001 * 109.47591 * 174.99569 * 18 16 15 48 48 H 1.09007 * 109.47198 * 295.00238 * 18 16 15 49 49 H 0.96693 * 114.00147 * 179.97438 * 19 18 16 50 50 H 0.96999 * 120.00346 * 334.99821 * 20 16 15 51 51 H 0.96993 * 120.00134 * 0.27734 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5659 1.4439 0.1131 5 6 3.9766 0.8881 1.4782 6 7 1.6423 2.1011 -1.2467 7 7 1.8928 1.6631 -2.4278 8 6 1.4102 2.4704 -3.3379 9 6 1.5087 2.2854 -4.8302 10 6 0.7826 3.5308 -2.6802 11 6 0.9486 3.2749 -1.3302 12 6 0.4687 4.0990 -0.2094 13 8 0.7732 3.8099 0.9320 14 7 -0.3084 5.1741 -0.4478 15 6 -0.8752 5.9308 0.6712 16 6 -1.7112 7.0923 0.1300 17 1 -2.5688 6.6993 -0.4161 18 6 -2.2003 7.9550 1.2951 19 8 -1.0819 8.3747 2.0794 20 7 -0.8906 7.9067 -0.7698 21 6 -1.4862 8.6580 -1.7477 22 1 -2.5607 8.6497 -1.8558 23 6 -0.7087 9.4292 -2.6006 24 7 0.6005 9.4427 -2.4660 25 14 -1.5211 10.4534 -3.9350 26 1 -0.4798 11.1849 -4.7003 27 1 -2.2753 9.5623 -4.8528 28 1 -2.4539 11.4270 -3.3128 29 1 -0.3633 -1.0237 0.0901 30 1 -0.3634 0.5900 0.8414 31 1 -0.3633 0.4338 -0.9317 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 1.6125 1.9790 0.8469 35 1 3.9892 0.8211 -0.6750 36 1 3.9370 2.4635 0.0093 37 1 5.0561 0.9800 1.5979 38 1 3.4745 1.4505 2.2654 39 1 3.6918 -0.1619 1.5436 40 1 0.6475 1.7184 -5.1836 41 1 1.5262 3.2606 -5.3168 42 1 2.4236 1.7435 -5.0695 43 1 0.2765 4.3725 -3.1297 44 1 -0.4924 5.4468 -1.3603 45 1 -0.0685 6.3213 1.2915 46 1 -1.5086 5.2754 1.2692 47 1 -2.7201 8.8304 0.9059 48 1 -2.8820 7.3739 1.9163 49 1 -1.3180 8.9271 2.8371 50 1 0.0745 7.9139 -0.6729 51 1 1.0224 8.9107 -1.7733 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001507210452.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:21:52 Heat of formation + Delta-G solvation = -15.163974 kcal Electronic energy + Delta-G solvation = -30727.686313 eV Core-core repulsion = 26663.670725 eV Total energy + Delta-G solvation = -4064.015588 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.53363 -39.21939 -37.29839 -37.03816 -35.06649 -33.81050 -32.60227 -31.97770 -31.73570 -30.54505 -28.52181 -28.05519 -25.72401 -25.52384 -23.55116 -23.03045 -22.72845 -21.37878 -20.45533 -20.34426 -19.04998 -17.76287 -17.45369 -16.73223 -16.25968 -16.06689 -15.74845 -15.01282 -14.85064 -14.71797 -14.38331 -14.25719 -13.99070 -13.71765 -13.64809 -13.43615 -13.41927 -13.17889 -13.07456 -12.76393 -12.51856 -12.38323 -12.26350 -12.06707 -11.91162 -11.70790 -11.53848 -11.19060 -11.13464 -10.90712 -10.80301 -10.77742 -10.51541 -10.47578 -10.04152 -9.76314 -9.53844 -9.21407 -9.06898 -9.00707 -8.73353 -8.67765 -7.13461 -6.15421 -3.17693 1.40991 2.42077 2.65857 3.39217 3.43526 3.47468 3.50443 3.68350 4.27644 4.59269 4.60828 4.69737 4.76117 4.82435 4.92449 4.98859 5.06756 5.15035 5.19355 5.28489 5.38902 5.42875 5.46277 5.49498 5.52200 5.58295 5.67189 5.67624 5.73949 5.76808 5.80281 5.85803 5.88296 5.90750 5.91528 5.95603 6.02140 6.04770 6.14253 6.23764 6.35952 6.59859 6.62368 6.73700 6.90164 7.71162 7.71679 8.09601 8.20310 8.34915 8.69974 9.13729 10.00698 10.15710 11.31891 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.011298 B = 0.003354 C = 0.002845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2477.657532 B = 8346.378861 C = 9839.622710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.130 4.130 3 C 0.136 3.864 4 C -0.129 4.129 5 C -0.149 4.149 6 N -0.247 5.247 7 N -0.276 5.276 8 C 0.018 3.982 9 C -0.065 4.065 10 C -0.182 4.182 11 C -0.034 4.034 12 C 0.588 3.412 13 O -0.553 6.553 14 N -0.696 5.696 15 C 0.119 3.881 16 C 0.171 3.829 17 H 0.068 0.932 18 C 0.060 3.940 19 O -0.562 6.562 20 N -0.724 5.724 21 C -0.342 4.342 22 H 0.064 0.936 23 C -0.038 4.038 24 N -0.936 5.936 25 Si 1.078 2.922 26 H -0.285 1.285 27 H -0.294 1.294 28 H -0.296 1.296 29 H 0.058 0.942 30 H 0.057 0.943 31 H 0.051 0.949 32 H 0.077 0.923 33 H 0.084 0.916 34 H 0.136 0.864 35 H 0.073 0.927 36 H 0.068 0.932 37 H 0.061 0.939 38 H 0.061 0.939 39 H 0.059 0.941 40 H 0.070 0.930 41 H 0.077 0.923 42 H 0.068 0.932 43 H 0.161 0.839 44 H 0.412 0.588 45 H 0.079 0.921 46 H 0.064 0.936 47 H 0.050 0.950 48 H 0.028 0.972 49 H 0.365 0.635 50 H 0.372 0.628 51 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.361 -17.333 4.527 17.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.168 4.168 3 C 0.036 3.964 4 C -0.168 4.168 5 C -0.207 4.207 6 N -0.035 5.035 7 N -0.110 5.110 8 C -0.138 4.138 9 C -0.123 4.123 10 C -0.211 4.211 11 C -0.163 4.163 12 C 0.373 3.627 13 O -0.433 6.433 14 N -0.347 5.347 15 C -0.005 4.005 16 C 0.060 3.940 17 H 0.086 0.914 18 C -0.022 4.022 19 O -0.366 6.366 20 N -0.367 5.367 21 C -0.472 4.472 22 H 0.082 0.918 23 C -0.237 4.237 24 N -0.580 5.580 25 Si 0.909 3.091 26 H -0.211 1.211 27 H -0.222 1.222 28 H -0.224 1.224 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.071 0.929 32 H 0.095 0.905 33 H 0.102 0.898 34 H 0.153 0.847 35 H 0.092 0.908 36 H 0.087 0.913 37 H 0.080 0.920 38 H 0.080 0.920 39 H 0.078 0.922 40 H 0.089 0.911 41 H 0.096 0.904 42 H 0.087 0.913 43 H 0.179 0.821 44 H 0.250 0.750 45 H 0.097 0.903 46 H 0.082 0.918 47 H 0.068 0.932 48 H 0.046 0.954 49 H 0.210 0.790 50 H 0.206 0.794 51 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 0.836 -17.861 3.842 18.289 hybrid contribution -1.024 0.388 1.238 1.653 sum -0.188 -17.473 5.080 18.197 Atomic orbital electron populations 1.21760 0.95225 1.01793 1.02210 1.21904 0.96765 0.94548 1.03601 1.22240 0.96575 0.94725 0.82908 1.21824 0.93261 1.02649 0.99026 1.21767 1.01688 1.01047 0.96150 1.45750 1.37305 1.14984 1.05424 1.72988 1.22207 1.25831 0.89929 1.21949 1.01712 0.93795 0.96386 1.20059 1.02472 1.02929 0.86861 1.22229 1.05952 1.01945 0.90940 1.21389 1.06358 0.93015 0.95487 1.16919 0.78540 0.80615 0.86603 1.90683 1.58585 1.71560 1.22484 1.45702 1.49400 1.27674 1.11916 1.21638 0.98240 0.92442 0.88207 1.20527 0.94216 0.89330 0.89909 0.91441 1.23018 0.87939 0.98345 0.92862 1.86546 1.34244 1.72224 1.43551 1.42372 1.05044 1.53415 1.35883 1.19998 0.92924 1.24201 1.10096 0.91771 1.25734 0.95943 1.00173 1.01814 1.70863 1.08824 1.42992 1.35358 0.83272 0.74433 0.75850 0.75542 1.21050 1.22186 1.22379 0.92304 0.92375 0.92941 0.90459 0.89766 0.84673 0.90822 0.91286 0.92024 0.91977 0.92235 0.91100 0.90414 0.91291 0.82096 0.75038 0.90299 0.91760 0.93158 0.95382 0.79001 0.79423 0.93143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.68 9.73 37.16 0.36 -1.32 16 2 C -0.13 -1.37 5.30 -26.73 -0.14 -1.52 16 3 C 0.14 1.74 2.38 -67.93 -0.16 1.58 16 4 C -0.13 -1.49 5.65 -26.73 -0.15 -1.64 16 5 C -0.15 -1.34 9.55 37.16 0.35 -0.98 16 6 N -0.25 -3.70 2.62 -50.69 -0.13 -3.83 16 7 N -0.28 -4.13 11.43 33.64 0.38 -3.74 16 8 C 0.02 0.25 7.22 -82.47 -0.60 -0.34 16 9 C -0.06 -0.70 10.45 36.00 0.38 -0.32 16 10 C -0.18 -2.78 10.44 -38.98 -0.41 -3.18 16 11 C -0.03 -0.56 6.96 -82.06 -0.57 -1.13 16 12 C 0.59 10.28 7.79 -12.64 -0.10 10.18 16 13 O -0.55 -10.45 14.42 5.25 0.08 -10.37 16 14 N -0.70 -11.92 5.38 -61.47 -0.33 -12.25 16 15 C 0.12 2.06 5.12 -4.04 -0.02 2.04 16 16 C 0.17 3.19 2.84 -67.93 -0.19 3.00 16 17 H 0.07 1.22 8.08 -51.93 -0.42 0.80 16 18 C 0.06 1.02 6.86 37.15 0.25 1.27 16 19 O -0.56 -9.80 12.64 -35.23 -0.45 -10.24 16 20 N -0.72 -16.89 4.51 -53.43 -0.24 -17.13 16 21 C -0.34 -8.93 9.93 -15.06 -0.15 -9.08 16 22 H 0.06 1.64 7.83 -52.49 -0.41 1.23 16 23 C -0.04 -1.05 5.50 -17.43 -0.10 -1.14 16 24 N -0.94 -28.03 13.70 55.49 0.76 -27.27 16 25 Si 1.08 24.86 29.92 -169.99 -5.09 19.77 16 26 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 27 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 28 H -0.30 -6.59 7.11 56.52 0.40 -6.19 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.05 0.67 7.88 -51.92 -0.41 0.26 16 32 H 0.08 0.85 7.97 -51.93 -0.41 0.43 16 33 H 0.08 0.71 6.52 -51.92 -0.34 0.37 16 34 H 0.14 1.96 5.40 -51.93 -0.28 1.68 16 35 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 38 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.06 0.45 6.76 -51.93 -0.35 0.09 16 40 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 42 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.16 2.31 7.59 -52.48 -0.40 1.92 16 44 H 0.41 7.17 7.17 -40.82 -0.29 6.88 16 45 H 0.08 1.53 7.39 -51.93 -0.38 1.15 16 46 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 47 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 48 H 0.03 0.39 8.14 -51.92 -0.42 -0.03 16 49 H 0.37 4.56 9.12 45.56 0.42 4.98 16 50 H 0.37 9.45 6.63 -40.82 -0.27 9.18 16 51 H 0.26 7.72 6.77 -40.82 -0.28 7.45 16 LS Contribution 414.46 15.07 6.25 6.25 Total: -1.00 -32.46 414.46 -7.71 -40.17 By element: Atomic # 1 Polarization: 28.94 SS G_CDS: -7.70 Total: 21.24 kcal Atomic # 6 Polarization: -1.34 SS G_CDS: -1.24 Total: -2.58 kcal Atomic # 7 Polarization: -64.67 SS G_CDS: 0.44 Total: -64.23 kcal Atomic # 8 Polarization: -20.24 SS G_CDS: -0.37 Total: -20.61 kcal Atomic # 14 Polarization: 24.86 SS G_CDS: -5.09 Total: 19.77 kcal Total LS contribution 6.25 Total: 6.25 kcal Total: -32.46 -7.71 -40.17 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001507210452.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.005 kcal (2) G-P(sol) polarization free energy of solvation -32.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds