Wall clock time and date at job start Tue Mar 31 2020 21:50:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47167 * 2 1 4 4 H 1.09003 * 109.46977 * 305.00286 * 3 2 1 5 5 C 1.52998 * 109.47172 * 64.99848 * 3 2 1 6 6 N 1.46504 * 109.47274 * 185.00275 * 3 2 1 7 7 N 1.28441 * 125.18557 * 306.43182 * 6 3 2 8 8 C 1.30863 * 110.92550 * 179.97438 * 7 6 3 9 9 C 1.39681 * 107.86277 * 359.77540 * 8 7 6 10 10 C 1.36591 * 125.19188 * 126.40841 * 6 3 2 11 11 C 1.47169 * 126.88686 * 359.97438 * 10 6 3 12 12 O 1.21635 * 119.99593 * 8.92188 * 11 10 6 13 13 N 1.34770 * 120.00450 * 188.92506 * 11 10 6 14 14 C 1.46502 * 119.99832 * 1.09148 * 13 11 10 15 15 C 1.46497 * 120.00203 * 181.08733 * 13 11 10 16 16 C 1.53005 * 109.47036 * 90.00379 * 15 13 11 17 17 H 1.08998 * 109.46620 * 305.00077 * 16 15 13 18 18 O 1.42903 * 109.47073 * 64.99527 * 16 15 13 19 19 C 1.52994 * 109.47483 * 185.00249 * 16 15 13 20 20 N 1.46499 * 109.47565 * 179.97438 * 19 16 15 21 21 C 1.46491 * 119.99832 * 269.99972 * 20 19 16 22 22 C 1.36937 * 119.99876 * 89.99304 * 20 19 16 23 23 H 1.07995 * 120.00362 * 330.55271 * 22 20 19 24 24 C 1.38817 * 119.99700 * 150.27633 * 22 20 19 25 25 N 1.31615 * 119.99682 * 2.11916 * 24 22 20 26 26 Si 1.86800 * 119.99736 * 182.12609 * 24 22 20 27 27 H 1.48499 * 109.47168 * 60.00086 * 26 24 22 28 28 H 1.48509 * 109.46528 * 179.97438 * 26 24 22 29 29 H 1.48493 * 109.47320 * 299.99671 * 26 24 22 30 30 H 1.09006 * 109.47046 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47144 * 299.99674 * 1 2 3 32 32 H 1.08999 * 109.47300 * 60.00416 * 1 2 3 33 33 H 1.09001 * 109.47144 * 240.00326 * 2 1 3 34 34 H 1.08993 * 109.47515 * 120.00248 * 2 1 3 35 35 H 1.08998 * 109.47235 * 300.00533 * 5 3 2 36 36 H 1.09003 * 109.46811 * 60.00337 * 5 3 2 37 37 H 1.09006 * 109.47292 * 180.02562 * 5 3 2 38 38 H 1.07994 * 126.07177 * 179.97438 * 8 7 6 39 39 H 1.07990 * 127.32513 * 180.26961 * 9 8 7 40 40 H 1.08998 * 109.47213 * 276.34804 * 14 13 11 41 41 H 1.09004 * 109.46936 * 36.34773 * 14 13 11 42 42 H 1.09001 * 109.47362 * 156.34842 * 14 13 11 43 43 H 1.09000 * 109.47402 * 330.00240 * 15 13 11 44 44 H 1.08998 * 109.47320 * 210.00014 * 15 13 11 45 45 H 0.96698 * 113.99510 * 60.00370 * 18 16 15 46 46 H 1.08996 * 109.47502 * 59.98972 * 19 16 15 47 47 H 1.09004 * 109.46667 * 299.99741 * 19 16 15 48 48 H 1.09001 * 109.47336 * 273.79504 * 21 20 19 49 49 H 1.09005 * 109.47368 * 33.79562 * 21 20 19 50 50 H 1.09006 * 109.47057 * 153.79360 * 21 20 19 51 51 H 0.97001 * 119.99548 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 -0.8418 5 6 1.6352 2.1265 1.3073 6 7 3.5001 1.4443 -0.1204 7 7 4.3064 0.7975 0.6419 8 6 5.5493 0.9975 0.2845 9 6 5.5452 1.8533 -0.8194 10 6 4.2115 2.1336 -1.0609 11 6 3.6685 2.9961 -2.1225 12 8 2.4863 3.2823 -2.1283 13 7 4.4810 3.4689 -3.0882 14 6 5.9000 3.1048 -3.0948 15 6 3.9452 4.3469 -4.1314 16 6 4.0580 5.8042 -3.6791 17 1 3.5650 5.9243 -2.7144 18 8 5.4367 6.1597 -3.5569 19 6 3.3866 6.7121 -4.7114 20 7 3.4941 8.1074 -4.2780 21 6 2.4468 8.6969 -3.4403 22 6 4.5736 8.8605 -4.6558 23 1 5.5268 8.3859 -4.8355 24 6 4.4411 10.2333 -4.8133 25 7 3.2889 10.8167 -4.5593 26 14 5.8980 11.2525 -5.3861 27 1 6.3385 10.7789 -6.7228 28 1 5.4990 12.6803 -5.4741 29 1 7.0141 11.1087 -4.4173 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 0.5489 2.1252 1.3969 36 1 2.0699 1.5875 2.1491 37 1 1.9982 3.1544 1.3071 38 1 6.4229 0.5733 0.7570 39 1 6.4009 2.2196 -1.3670 40 1 6.4483 3.7675 -2.4253 41 1 6.0122 2.0742 -2.7580 42 1 6.2954 3.2018 -4.1059 43 1 2.8982 4.1019 -4.3101 44 1 4.5132 4.2070 -5.0511 45 1 5.9386 6.0765 -4.3792 46 1 2.3351 6.4409 -4.8046 47 1 3.8797 6.5919 -5.6761 48 1 1.6493 9.0842 -4.0745 49 1 2.0430 7.9350 -2.7734 50 1 2.8687 9.5101 -2.8497 51 1 3.1965 11.7760 -4.6690 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001571602661.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:50:47 Heat of formation + Delta-G solvation = 35.839400 kcal Electronic energy + Delta-G solvation = -30712.035946 eV Core-core repulsion = 26650.232030 eV Total energy + Delta-G solvation = -4061.803916 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.75514 -39.73516 -37.40791 -36.78704 -35.44073 -34.50407 -31.87505 -31.66276 -31.13787 -29.34362 -29.19191 -27.17579 -26.05931 -25.62319 -25.05591 -22.93094 -22.49704 -21.81779 -20.58124 -20.45793 -19.22682 -17.44508 -16.90812 -16.58502 -16.32821 -15.99537 -15.53908 -15.34167 -14.99458 -14.95183 -14.64713 -14.57718 -14.06372 -13.86010 -13.57840 -13.29780 -13.23029 -13.07640 -12.97395 -12.68916 -12.55106 -12.17594 -12.02133 -11.87255 -11.82387 -11.58325 -11.29741 -11.13495 -11.07322 -10.81108 -10.67741 -10.64541 -10.55975 -10.24933 -10.06748 -9.93216 -9.89485 -9.72644 -9.32197 -9.11775 -8.60614 -8.36254 -6.55398 -5.68540 -3.17235 1.17255 2.18253 2.50521 2.97766 3.11494 3.41462 3.46283 3.47061 4.21348 4.24807 4.52451 4.52817 4.66999 4.86072 4.93228 4.94641 4.99523 5.04293 5.09891 5.14935 5.23750 5.29796 5.31958 5.45317 5.47067 5.48531 5.56057 5.60492 5.64864 5.66188 5.67343 5.78015 5.87964 5.94320 5.96370 5.97394 6.06985 6.34329 6.43714 6.56895 6.64879 6.76915 6.91938 7.20414 7.49327 7.80505 7.89393 7.91450 8.04126 8.27850 8.52566 9.31592 9.91650 10.44748 11.38076 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.017516 B = 0.002617 C = 0.002438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1598.169357 B =10695.212602 C =11482.243563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.127 4.127 3 C 0.132 3.868 4 H 0.134 0.866 5 C -0.160 4.160 6 N -0.250 5.250 7 N -0.276 5.276 8 C -0.011 4.011 9 C -0.208 4.208 10 C -0.032 4.032 11 C 0.586 3.414 12 O -0.542 6.542 13 N -0.585 5.585 14 C 0.061 3.939 15 C 0.084 3.916 16 C 0.071 3.929 17 H 0.089 0.911 18 O -0.543 6.543 19 C 0.126 3.874 20 N -0.593 5.593 21 C 0.163 3.837 22 C -0.243 4.243 23 H 0.067 0.933 24 C 0.001 3.999 25 N -0.912 5.912 26 Si 0.905 3.095 27 H -0.284 1.284 28 H -0.292 1.292 29 H -0.284 1.284 30 H 0.061 0.939 31 H 0.062 0.938 32 H 0.060 0.940 33 H 0.065 0.935 34 H 0.076 0.924 35 H 0.081 0.919 36 H 0.067 0.933 37 H 0.063 0.937 38 H 0.184 0.816 39 H 0.179 0.821 40 H 0.070 0.930 41 H 0.085 0.915 42 H 0.073 0.927 43 H 0.091 0.909 44 H 0.081 0.919 45 H 0.361 0.639 46 H 0.044 0.956 47 H 0.050 0.950 48 H 0.016 0.984 49 H -0.013 1.013 50 H 0.061 0.939 51 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.183 -23.723 6.506 24.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.165 4.165 3 C 0.032 3.968 4 H 0.152 0.848 5 C -0.217 4.217 6 N -0.038 5.038 7 N -0.109 5.109 8 C -0.186 4.186 9 C -0.236 4.236 10 C -0.160 4.160 11 C 0.373 3.627 12 O -0.421 6.421 13 N -0.316 5.316 14 C -0.082 4.082 15 C -0.038 4.038 16 C 0.008 3.992 17 H 0.107 0.893 18 O -0.346 6.346 19 C -0.004 4.004 20 N -0.314 5.314 21 C 0.019 3.981 22 C -0.373 4.373 23 H 0.085 0.915 24 C -0.197 4.197 25 N -0.557 5.557 26 Si 0.735 3.265 27 H -0.211 1.211 28 H -0.218 1.218 29 H -0.210 1.210 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.079 0.921 33 H 0.084 0.916 34 H 0.095 0.905 35 H 0.100 0.900 36 H 0.086 0.914 37 H 0.082 0.918 38 H 0.201 0.799 39 H 0.196 0.804 40 H 0.089 0.911 41 H 0.103 0.897 42 H 0.092 0.908 43 H 0.110 0.890 44 H 0.100 0.900 45 H 0.206 0.794 46 H 0.062 0.938 47 H 0.068 0.932 48 H 0.034 0.966 49 H 0.006 0.994 50 H 0.080 0.920 51 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -0.511 -23.788 7.885 25.066 hybrid contribution 1.591 1.002 -1.374 2.329 sum 1.080 -22.785 6.511 23.722 Atomic orbital electron populations 1.21797 0.94077 1.02388 1.02656 1.21802 0.96881 0.94467 1.03359 1.22147 0.72922 0.99025 1.02734 0.84810 1.22153 1.02623 1.01166 0.95804 1.45983 1.07504 1.30881 1.19424 1.73103 1.01870 1.17662 1.18257 1.23611 0.94345 1.02324 0.98342 1.23088 0.95772 1.03558 1.01180 1.21392 0.92304 1.04368 0.97970 1.16941 0.85517 0.79488 0.80723 1.90741 1.15612 1.60214 1.75520 1.47375 1.09672 1.47760 1.26831 1.22570 0.80829 1.01252 1.03522 1.22502 1.01062 0.91178 0.89106 1.23211 0.83732 0.90084 1.02189 0.89267 1.86633 1.20524 1.90654 1.36806 1.21303 0.97779 0.86588 0.94693 1.43675 1.23908 1.06474 1.57384 1.20829 0.90784 0.94335 0.92195 1.19109 0.88882 0.89378 1.39893 0.91501 1.25246 0.96515 0.97737 1.00156 1.70036 1.23264 1.09538 1.52852 0.86331 0.82038 0.79274 0.78841 1.21054 1.21760 1.21041 0.91968 0.91918 0.92060 0.91586 0.90506 0.90000 0.91410 0.91761 0.79893 0.80443 0.91148 0.89661 0.90795 0.89037 0.90020 0.79399 0.93757 0.93175 0.96589 0.99420 0.92027 0.93766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 9.67 37.16 0.36 -0.74 16 2 C -0.13 -1.16 5.47 -26.73 -0.15 -1.31 16 3 C 0.13 1.49 2.97 -67.93 -0.20 1.29 16 4 H 0.13 1.74 5.47 -51.93 -0.28 1.45 16 5 C -0.16 -1.63 9.22 37.16 0.34 -1.29 16 6 N -0.25 -3.20 3.09 -50.69 -0.16 -3.36 16 7 N -0.28 -3.41 11.56 30.59 0.35 -3.06 16 8 C -0.01 -0.11 12.03 -17.43 -0.21 -0.32 16 9 C -0.21 -2.20 8.87 -38.98 -0.35 -2.55 16 10 C -0.03 -0.42 6.80 -82.06 -0.56 -0.98 16 11 C 0.59 8.59 7.65 -12.64 -0.10 8.49 16 12 O -0.54 -9.27 14.03 5.25 0.07 -9.20 16 13 N -0.59 -7.43 2.84 -182.94 -0.52 -7.95 16 14 C 0.06 0.55 8.36 59.85 0.50 1.05 16 15 C 0.08 1.12 5.11 -4.04 -0.02 1.10 16 16 C 0.07 1.23 3.48 -26.73 -0.09 1.14 16 17 H 0.09 1.85 8.14 -51.93 -0.42 1.43 16 18 O -0.54 -9.64 11.81 -35.23 -0.42 -10.06 16 19 C 0.13 2.50 5.40 -4.05 -0.02 2.48 16 20 N -0.59 -15.08 2.87 -181.13 -0.52 -15.60 16 21 C 0.16 4.24 8.98 59.84 0.54 4.77 16 22 C -0.24 -6.64 9.10 -15.06 -0.14 -6.77 16 23 H 0.07 1.75 7.32 -52.49 -0.38 1.37 16 24 C 0.00 0.03 5.31 -17.43 -0.09 -0.06 16 25 N -0.91 -27.03 10.47 55.49 0.58 -26.45 16 26 Si 0.91 21.99 29.55 -169.99 -5.02 16.97 16 27 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 28 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 29 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 30 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.06 0.41 6.57 -51.93 -0.34 0.07 16 32 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 35 H 0.08 0.67 6.56 -51.93 -0.34 0.32 16 36 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 37 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 38 H 0.18 1.27 8.06 -52.49 -0.42 0.85 16 39 H 0.18 1.41 4.60 -52.49 -0.24 1.17 16 40 H 0.07 0.68 7.63 -51.93 -0.40 0.28 16 41 H 0.09 0.65 4.93 -51.93 -0.26 0.39 16 42 H 0.07 0.54 7.82 -51.93 -0.41 0.13 16 43 H 0.09 1.28 7.41 -51.93 -0.38 0.89 16 44 H 0.08 0.87 7.85 -51.93 -0.41 0.46 16 45 H 0.36 5.21 9.02 45.56 0.41 5.63 16 46 H 0.04 0.85 8.07 -51.93 -0.42 0.43 16 47 H 0.05 0.94 8.04 -51.93 -0.42 0.52 16 48 H 0.02 0.43 7.80 -51.93 -0.41 0.03 16 49 H -0.01 -0.30 8.10 -51.93 -0.42 -0.72 16 50 H 0.06 1.75 6.77 -51.93 -0.35 1.39 16 51 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 LS Contribution 403.28 15.07 6.08 6.08 Total: -1.00 -34.47 403.28 -7.30 -41.76 By element: Atomic # 1 Polarization: 12.12 SS G_CDS: -7.56 Total: 4.56 kcal Atomic # 6 Polarization: 6.49 SS G_CDS: -0.18 Total: 6.31 kcal Atomic # 7 Polarization: -56.16 SS G_CDS: -0.26 Total: -56.42 kcal Atomic # 8 Polarization: -18.91 SS G_CDS: -0.34 Total: -19.26 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -34.47 -7.30 -41.76 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571602661.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.602 kcal (2) G-P(sol) polarization free energy of solvation -34.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.762 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds