Wall clock time and date at job start Tue Mar 31 2020 21:29:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42903 * 114.00179 * 2 1 4 4 C 1.52999 * 109.47129 * 179.97438 * 3 2 1 5 5 N 1.46505 * 109.46990 * 178.48856 * 4 3 2 6 6 C 1.36454 * 127.13532 * 276.24893 * 5 4 3 7 7 N 1.38585 * 126.47341 * 0.06105 * 6 5 4 8 8 C 1.40458 * 110.99814 * 160.46779 * 7 6 5 9 9 C 1.54394 * 111.45055 * 187.82221 * 8 7 6 10 10 C 1.50723 * 109.13431 * 284.57218 * 9 8 7 11 11 O 1.44221 * 112.85202 * 91.52365 * 10 9 8 12 12 C 1.43938 * 116.11667 * 318.68862 * 11 10 9 13 13 C 1.47603 * 110.99828 * 288.91567 * 7 6 5 14 14 N 1.31218 * 107.05405 * 180.02562 * 6 5 4 15 15 N 1.28537 * 109.85461 * 359.72989 * 14 6 5 16 16 C 1.30291 * 110.05660 * 0.45156 * 15 14 6 17 17 C 1.50699 * 126.34763 * 179.82086 * 16 15 14 18 18 C 1.52992 * 109.47195 * 116.85442 * 17 16 15 19 19 C 1.53002 * 109.46837 * 356.85396 * 17 16 15 20 20 C 1.50700 * 109.47045 * 236.85869 * 17 16 15 21 21 H 1.07997 * 120.00055 * 359.97438 * 20 17 16 22 22 C 1.37875 * 120.00076 * 179.72777 * 20 17 16 23 23 N 1.31518 * 119.99861 * 0.27057 * 22 20 17 24 24 Si 1.86796 * 120.00209 * 180.27654 * 22 20 17 25 25 H 1.48500 * 109.47259 * 359.97438 * 24 22 20 26 26 H 1.48497 * 109.47531 * 119.99898 * 24 22 20 27 27 H 1.48506 * 109.46968 * 239.99480 * 24 22 20 28 28 H 1.08996 * 109.46879 * 59.99867 * 1 2 3 29 29 H 1.08993 * 109.47447 * 179.97438 * 1 2 3 30 30 H 1.09009 * 109.46925 * 300.00185 * 1 2 3 31 31 H 1.09007 * 109.46751 * 60.00242 * 3 2 1 32 32 H 1.08996 * 109.47233 * 299.99910 * 3 2 1 33 33 H 1.09000 * 109.46720 * 58.49196 * 4 3 2 34 34 H 1.08999 * 109.47215 * 298.49135 * 4 3 2 35 35 H 1.08997 * 109.08891 * 308.33586 * 8 7 6 36 36 H 1.09007 * 109.08466 * 67.38617 * 8 7 6 37 37 H 1.08997 * 109.52479 * 44.46855 * 9 8 7 38 38 H 1.08998 * 109.52587 * 164.60404 * 9 8 7 39 39 H 1.09001 * 108.80342 * 212.39462 * 10 9 8 40 40 H 1.08999 * 108.80766 * 330.65169 * 10 9 8 41 41 H 1.09000 * 108.99374 * 79.85879 * 12 11 10 42 42 H 1.08995 * 109.00084 * 198.70744 * 12 11 10 43 43 H 1.08997 * 109.63988 * 272.68183 * 13 7 6 44 44 H 1.09004 * 109.63591 * 33.29908 * 13 7 6 45 45 H 1.08999 * 109.47291 * 187.63368 * 18 17 16 46 46 H 1.09002 * 109.47558 * 307.63894 * 18 17 16 47 47 H 1.09000 * 109.47090 * 67.63564 * 18 17 16 48 48 H 1.08999 * 109.47361 * 301.17151 * 19 17 16 49 49 H 1.09000 * 109.46683 * 61.17720 * 19 17 16 50 50 H 1.09000 * 109.46888 * 181.17123 * 19 17 16 51 51 H 0.97002 * 120.00196 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 7 4.1314 2.5225 -0.0358 6 6 4.3564 3.2943 -1.1384 7 7 4.0619 2.9615 -2.4510 8 6 4.0047 4.1081 -3.2603 9 6 3.4889 3.7743 -4.6767 10 6 4.5858 3.0932 -5.4542 11 8 4.5458 1.6562 -5.3375 12 6 4.2598 1.1347 -4.0268 13 6 4.9707 1.9093 -2.9466 14 7 4.9037 4.4114 -0.7209 15 7 5.0268 4.3859 0.5583 16 6 4.5779 3.2565 1.0279 17 6 4.5499 2.8393 2.4757 18 6 3.0996 2.6478 2.9234 19 6 5.2090 3.9228 3.3315 20 6 5.3016 1.5434 2.6396 21 1 5.7539 1.0692 1.7812 22 6 5.4162 0.9658 3.8863 23 7 4.8650 1.5431 4.9316 24 14 6.3545 -0.6364 4.0907 25 1 6.8742 -1.0775 2.7714 26 1 7.4890 -0.4299 5.0263 27 1 5.4455 -1.6761 4.6369 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.6886 1.8464 0.8901 32 1 1.6887 1.8464 -0.8900 33 1 3.8556 0.6203 -0.8753 34 1 3.8586 0.6674 0.9041 35 1 3.3368 4.8362 -2.8001 36 1 5.0027 4.5396 -3.3380 37 1 2.6276 3.1103 -4.6037 38 1 3.1979 4.6939 -5.1845 39 1 4.4908 3.3632 -6.5059 40 1 5.5489 3.4488 -5.0881 41 1 3.1852 1.1857 -3.8513 42 1 4.5774 0.0930 -3.9823 43 1 5.8716 2.3663 -3.3559 44 1 5.2354 1.2389 -2.1288 45 1 3.0708 2.4793 3.9999 46 1 2.5232 3.5403 2.6798 47 1 2.6713 1.7872 2.4095 48 1 6.2360 4.0739 2.9990 49 1 4.6531 4.8548 3.2292 50 1 5.2075 3.6117 4.3762 51 1 4.9459 1.1369 5.8088 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001646809903.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:29:53 Heat of formation + Delta-G solvation = -7.865639 kcal Electronic energy + Delta-G solvation = -32345.032135 eV Core-core repulsion = 28281.333026 eV Total energy + Delta-G solvation = -4063.699109 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -44.03464 -40.84684 -39.06983 -37.85439 -37.24754 -35.94566 -33.70029 -33.29772 -31.14122 -30.82815 -28.83901 -27.75082 -27.37944 -27.23422 -27.16387 -24.66291 -23.88808 -23.17617 -21.86310 -21.54849 -20.58889 -18.82954 -18.38888 -18.00977 -17.72901 -17.28228 -16.99796 -16.90154 -16.75360 -16.18539 -16.07901 -15.74048 -15.63931 -15.19934 -14.73196 -14.58338 -14.42478 -14.02978 -13.64491 -13.59116 -13.39493 -13.27827 -13.01310 -12.93374 -12.73747 -12.68110 -12.55567 -12.43033 -12.40215 -12.29634 -12.22973 -12.17663 -11.83240 -11.76526 -11.63284 -11.42489 -11.08264 -11.05537 -10.69124 -10.56851 -10.44016 -10.36586 -9.30874 -8.08007 -6.24979 0.83426 1.21813 1.43032 1.48013 1.55126 1.88615 2.42944 2.44009 2.79111 2.95052 3.16466 3.60386 3.66937 3.71355 3.79268 3.82068 3.89429 3.90471 4.09778 4.20766 4.23286 4.31489 4.34700 4.41297 4.50066 4.51251 4.56265 4.62426 4.66936 4.73220 4.77012 4.81200 4.83729 4.88135 4.93690 4.97210 5.04831 5.12396 5.18629 5.20369 5.33971 5.48213 5.54150 5.62421 5.80630 5.95032 6.05987 6.06197 6.21685 6.24172 6.26443 6.73224 7.42690 7.84487 8.92694 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.011922 B = 0.004158 C = 0.003831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2348.054013 B = 6732.975290 C = 7307.788790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.400 6.400 3 C 0.064 3.936 4 C 0.111 3.889 5 N -0.461 5.461 6 C 0.337 3.663 7 N -0.453 5.453 8 C 0.075 3.925 9 C -0.138 4.138 10 C 0.054 3.946 11 O -0.404 6.404 12 C 0.073 3.927 13 C 0.030 3.970 14 N -0.353 5.353 15 N -0.340 5.340 16 C 0.236 3.764 17 C 0.141 3.859 18 C -0.116 4.116 19 C -0.106 4.106 20 C -0.522 4.522 21 H 0.047 0.953 22 C 0.041 3.959 23 N -0.893 5.893 24 Si 0.947 3.053 25 H -0.274 1.274 26 H -0.285 1.285 27 H -0.276 1.276 28 H 0.055 0.945 29 H 0.107 0.893 30 H 0.042 0.958 31 H 0.048 0.952 32 H 0.062 0.938 33 H 0.108 0.892 34 H 0.109 0.891 35 H 0.073 0.927 36 H 0.034 0.966 37 H 0.085 0.915 38 H 0.115 0.885 39 H 0.113 0.887 40 H 0.043 0.957 41 H 0.072 0.928 42 H 0.114 0.886 43 H 0.060 0.940 44 H 0.082 0.918 45 H 0.075 0.925 46 H 0.016 0.984 47 H 0.044 0.956 48 H 0.019 0.981 49 H 0.021 0.979 50 H 0.076 0.924 51 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.961 -2.647 -16.793 18.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.318 6.318 3 C -0.014 4.014 4 C -0.012 4.012 5 N -0.155 5.155 6 C -0.020 4.020 7 N -0.178 5.178 8 C -0.053 4.053 9 C -0.176 4.176 10 C -0.022 4.022 11 O -0.324 6.324 12 C -0.004 4.004 13 C -0.096 4.096 14 N -0.196 5.196 15 N -0.177 5.177 16 C -0.033 4.033 17 C 0.138 3.862 18 C -0.175 4.175 19 C -0.164 4.164 20 C -0.560 4.560 21 H 0.065 0.935 22 C -0.161 4.161 23 N -0.531 5.531 24 Si 0.773 3.227 25 H -0.198 1.198 26 H -0.211 1.211 27 H -0.201 1.201 28 H 0.073 0.927 29 H 0.125 0.875 30 H 0.061 0.939 31 H 0.066 0.934 32 H 0.081 0.919 33 H 0.126 0.874 34 H 0.127 0.873 35 H 0.091 0.909 36 H 0.053 0.947 37 H 0.104 0.896 38 H 0.133 0.867 39 H 0.131 0.869 40 H 0.061 0.939 41 H 0.090 0.910 42 H 0.132 0.868 43 H 0.078 0.922 44 H 0.101 0.899 45 H 0.094 0.906 46 H 0.035 0.965 47 H 0.063 0.937 48 H 0.038 0.962 49 H 0.040 0.960 50 H 0.095 0.905 51 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -7.681 -1.758 -16.858 18.608 hybrid contribution 0.657 -0.988 0.927 1.505 sum -7.024 -2.746 -15.931 17.626 Atomic orbital electron populations 1.22980 0.78778 1.04328 1.00797 1.87774 1.21978 1.26473 1.95600 1.22591 0.92128 0.85611 1.01030 1.21752 0.92972 0.79890 1.06605 1.45963 1.47345 1.16656 1.05557 1.22561 1.00992 0.90126 0.88337 1.56171 1.51163 1.14856 0.95567 1.21184 1.00903 0.89433 0.93809 1.22055 0.99445 1.03545 0.92518 1.22548 0.97491 0.79897 1.02226 1.88271 1.92743 1.21838 1.29579 1.22387 1.00063 0.97489 0.80473 1.22701 0.94193 0.93187 0.99518 1.74387 1.19682 1.20434 1.05130 1.73932 1.22463 1.19161 1.02167 1.25831 0.96237 0.87569 0.93664 1.16870 0.95033 0.94732 0.79538 1.21784 0.94545 0.97562 1.03570 1.21479 0.97493 0.95391 1.02053 1.20935 1.35150 1.05949 0.94007 0.93515 1.25378 0.95629 0.99718 0.95390 1.69908 1.43981 1.39585 0.99607 0.85675 0.78612 0.80403 0.77973 1.19828 1.21093 1.20147 0.92669 0.87467 0.93924 0.93384 0.91949 0.87356 0.87319 0.90862 0.94730 0.89596 0.86698 0.86939 0.93912 0.90985 0.86818 0.92167 0.89921 0.90634 0.96512 0.93712 0.96221 0.95962 0.90496 0.92500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.53 11.01 113.37 1.25 1.78 16 2 O -0.40 -11.00 10.70 -148.98 -1.59 -12.59 16 3 C 0.06 1.89 5.96 71.98 0.43 2.31 16 4 C 0.11 3.65 5.45 86.38 0.47 4.12 16 5 N -0.46 -17.66 2.79 -514.84 -1.44 -19.10 16 6 C 0.34 12.26 6.67 260.11 1.73 14.00 16 7 N -0.45 -12.36 4.05 -720.96 -2.92 -15.28 16 8 C 0.07 1.81 4.42 87.94 0.39 2.20 16 9 C -0.14 -2.21 5.67 30.33 0.17 -2.04 16 10 C 0.05 0.90 6.26 71.24 0.45 1.34 16 11 O -0.40 -8.25 10.92 -148.98 -1.63 -9.88 16 12 C 0.07 1.38 6.35 71.25 0.45 1.84 16 13 C 0.03 0.72 4.94 85.43 0.42 1.14 16 14 N -0.35 -15.21 11.42 -58.00 -0.66 -15.87 16 15 N -0.34 -16.29 11.50 -49.54 -0.57 -16.86 16 16 C 0.24 10.74 6.27 137.64 0.86 11.60 16 17 C 0.14 6.73 0.51 -53.68 -0.03 6.70 16 18 C -0.12 -5.19 7.68 71.98 0.55 -4.64 16 19 C -0.11 -5.23 7.76 71.98 0.56 -4.67 16 20 C -0.52 -26.02 6.28 25.60 0.16 -25.86 16 21 H 0.05 2.37 7.30 -2.91 -0.02 2.35 16 22 C 0.04 2.01 5.15 84.65 0.44 2.45 16 23 N -0.89 -45.52 9.44 21.45 0.20 -45.32 16 24 Si 0.95 40.34 29.54 68.60 2.03 42.37 16 25 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 26 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 27 H -0.28 -11.45 7.11 99.48 0.71 -10.74 16 28 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 29 H 0.11 1.65 8.14 -2.39 -0.02 1.64 16 30 H 0.04 0.84 8.14 -2.38 -0.02 0.82 16 31 H 0.05 1.57 6.04 -2.38 -0.01 1.55 16 32 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 33 H 0.11 3.04 6.38 -2.39 -0.02 3.03 16 34 H 0.11 4.16 5.45 -2.39 -0.01 4.14 16 35 H 0.07 1.95 7.98 -2.39 -0.02 1.93 16 36 H 0.03 0.92 7.56 -2.38 -0.02 0.91 16 37 H 0.09 1.42 7.25 -2.39 -0.02 1.40 16 38 H 0.11 1.30 8.14 -2.39 -0.02 1.28 16 39 H 0.11 1.36 8.14 -2.39 -0.02 1.34 16 40 H 0.04 0.78 6.61 -2.39 -0.02 0.77 16 41 H 0.07 1.35 7.26 -2.39 -0.02 1.33 16 42 H 0.11 1.81 8.14 -2.39 -0.02 1.79 16 43 H 0.06 1.51 6.85 -2.39 -0.02 1.50 16 44 H 0.08 2.12 6.26 -2.38 -0.01 2.11 16 45 H 0.07 3.64 6.32 -2.39 -0.02 3.63 16 46 H 0.02 0.69 8.13 -2.39 -0.02 0.67 16 47 H 0.04 1.88 4.83 -2.39 -0.01 1.87 16 48 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 49 H 0.02 1.03 8.14 -2.39 -0.02 1.01 16 50 H 0.08 3.97 6.03 -2.39 -0.01 3.96 16 51 H 0.27 12.94 8.31 -92.71 -0.77 12.17 16 Total: -1.00 -61.35 383.86 2.66 -58.69 By element: Atomic # 1 Polarization: 20.65 SS G_CDS: 0.93 Total: 21.58 kcal Atomic # 6 Polarization: 3.96 SS G_CDS: 8.31 Total: 12.26 kcal Atomic # 7 Polarization: -107.04 SS G_CDS: -5.38 Total: -112.43 kcal Atomic # 8 Polarization: -19.25 SS G_CDS: -3.22 Total: -22.47 kcal Atomic # 14 Polarization: 40.34 SS G_CDS: 2.03 Total: 42.37 kcal Total: -61.35 2.66 -58.69 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001646809903.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.824 kcal (2) G-P(sol) polarization free energy of solvation -61.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds