Wall clock time and date at job start Tue Mar 31 2020 21:54:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47332 * 2 1 4 4 H 1.09002 * 109.47238 * 54.40273 * 3 2 1 5 5 N 1.46501 * 109.47054 * 294.40278 * 3 2 1 6 6 C 1.34784 * 119.99873 * 84.99860 * 5 3 2 7 7 C 1.50705 * 119.99737 * 180.02562 * 6 5 3 8 8 O 1.21282 * 119.99847 * 0.02562 * 6 5 3 9 9 C 1.50700 * 109.47467 * 174.40496 * 3 2 1 10 10 O 1.21278 * 120.00114 * 110.69789 * 9 3 2 11 11 N 1.34772 * 119.99708 * 290.70412 * 9 3 2 12 12 C 1.47078 * 120.88510 * 356.83768 * 11 9 3 13 13 C 1.53236 * 108.52324 * 231.20778 * 12 11 9 14 14 N 1.46897 * 109.34071 * 306.17093 * 13 12 11 15 15 C 1.46902 * 111.00121 * 187.25231 * 14 13 12 16 16 C 1.53946 * 113.74287 * 273.73879 * 15 14 13 17 17 N 1.47813 * 86.03313 * 222.08456 * 16 15 14 18 18 C 1.36935 * 134.44904 * 204.64194 * 17 16 15 19 19 H 1.08001 * 119.99890 * 179.87043 * 18 17 16 20 20 C 1.38812 * 120.00558 * 359.86896 * 18 17 16 21 21 N 1.31619 * 119.99602 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00152 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.46995 * 89.99933 * 22 20 18 24 24 H 1.48499 * 109.47021 * 209.99640 * 22 20 18 25 25 H 1.48503 * 109.47201 * 330.00158 * 22 20 18 26 26 C 1.47580 * 91.05450 * 24.55082 * 17 16 15 27 27 C 1.46903 * 111.27098 * 63.10102 * 14 13 12 28 28 C 1.47081 * 120.88167 * 176.86165 * 11 9 3 29 29 H 1.08999 * 109.47607 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47335 * 300.00303 * 1 2 3 31 31 H 1.09006 * 109.46913 * 60.00366 * 1 2 3 32 32 H 1.08997 * 109.47335 * 239.99697 * 2 1 3 33 33 H 1.08998 * 109.46826 * 119.99962 * 2 1 3 34 34 H 0.97001 * 120.00314 * 265.00436 * 5 3 2 35 35 H 1.08993 * 109.47054 * 0.02562 * 7 6 5 36 36 H 1.08994 * 109.46974 * 120.00423 * 7 6 5 37 37 H 1.09003 * 109.46792 * 240.00007 * 7 6 5 38 38 H 1.08994 * 109.63000 * 111.49767 * 12 11 9 39 39 H 1.09006 * 109.62728 * 350.91548 * 12 11 9 40 40 H 1.08999 * 109.49403 * 186.20426 * 13 12 11 41 41 H 1.09003 * 109.49425 * 66.12654 * 13 12 11 42 42 H 1.08999 * 112.94180 * 45.32924 * 15 14 13 43 43 H 1.09002 * 113.76435 * 336.34857 * 16 15 14 44 44 H 1.08999 * 113.76740 * 107.74400 * 16 15 14 45 45 H 0.97008 * 119.99516 * 179.97438 * 21 20 18 46 46 H 1.09003 * 113.76535 * 221.15028 * 26 17 16 47 47 H 1.08998 * 113.87157 * 89.76715 * 26 17 16 48 48 H 1.08996 * 109.49038 * 56.86106 * 27 14 13 49 49 H 1.09003 * 109.49216 * 176.93673 * 27 14 13 50 50 H 1.09005 * 109.62842 * 248.50554 * 28 11 9 51 51 H 1.09002 * 109.62858 * 9.07840 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5972 1.9845 0.8356 5 7 1.6648 2.0931 -1.2578 6 6 0.4487 2.6596 -1.3869 7 6 0.0625 3.3284 -2.6810 8 8 -0.3348 2.6311 -0.4616 9 6 3.5407 1.4448 0.1385 10 8 4.2354 1.7848 -0.7956 11 7 4.1106 1.0688 1.3005 12 6 3.2864 0.7190 2.4673 13 6 3.7887 1.5172 3.6751 14 7 5.2304 1.2905 3.8426 15 6 5.7178 1.8989 5.0877 16 6 6.1068 3.3813 4.9423 17 7 7.2795 3.0494 5.7787 18 6 8.1002 3.7670 6.6074 19 1 8.9121 3.2746 7.1220 20 6 7.8887 5.1272 6.7862 21 7 6.8996 5.7274 6.1587 22 14 9.0079 6.1057 7.9172 23 1 10.1546 6.6389 7.1387 24 1 8.2467 7.2334 8.5123 25 1 9.5122 5.2229 8.9996 26 6 7.2091 1.6348 5.3641 27 6 5.9858 1.7853 2.6839 28 6 5.5735 0.9980 1.4356 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 2.2916 2.1161 -1.9978 35 1 0.8878 3.2538 -3.3890 36 1 -0.8172 2.8364 -3.0959 37 1 -0.1627 4.3784 -2.4943 38 1 3.3747 -0.3480 2.6713 39 1 2.2448 0.9718 2.2688 40 1 3.2624 1.1900 4.5717 41 1 3.6041 2.5790 3.5116 42 1 5.0707 1.6966 5.9411 43 1 6.3620 3.6706 3.9228 44 1 5.4065 4.0679 5.4180 45 1 6.7516 6.6779 6.2839 46 1 7.3873 0.9297 6.1760 47 1 7.7884 1.4082 4.4691 48 1 5.7707 2.8433 2.5343 49 1 7.0530 1.6524 2.8618 50 1 5.8817 -0.0423 1.5403 51 1 6.0442 1.4352 0.5550 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001674047831.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:54:45 Heat of formation + Delta-G solvation = 6.413544 kcal Electronic energy + Delta-G solvation = -30749.532704 eV Core-core repulsion = 26686.452788 eV Total energy + Delta-G solvation = -4063.079917 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.98625 -39.76016 -38.83993 -36.75553 -35.67819 -33.92784 -32.84129 -31.86453 -31.22096 -30.03097 -28.44807 -27.16076 -26.05236 -24.87683 -23.72217 -22.93377 -22.26312 -21.35549 -20.68259 -19.61384 -18.48877 -17.73206 -17.04201 -16.84079 -16.43788 -16.09359 -15.59065 -15.45426 -15.16790 -14.96743 -14.79141 -14.39110 -14.24296 -14.03883 -13.77539 -13.76777 -13.20962 -12.91068 -12.77678 -12.59009 -12.40004 -12.30811 -12.16517 -11.95299 -11.80627 -11.76524 -11.62560 -11.30060 -11.18251 -10.97625 -10.87841 -10.70105 -10.63735 -10.20454 -10.15246 -10.00890 -9.89559 -9.52486 -9.35202 -8.88586 -8.77410 -7.87892 -6.88118 -5.78874 -3.11644 2.27268 2.39577 2.54265 3.09496 3.37424 3.42111 3.44392 4.01794 4.10444 4.46661 4.51047 4.60258 4.69581 4.79722 4.87988 4.96643 5.03282 5.09178 5.10070 5.18403 5.25024 5.27475 5.36025 5.43973 5.47706 5.49750 5.51312 5.62496 5.66637 5.69020 5.78862 5.83328 5.89469 6.01913 6.05763 6.13220 6.14505 6.30909 6.33500 6.52782 6.60461 6.95634 7.17378 7.18235 7.22285 7.33254 7.49400 7.58265 7.85869 7.94662 7.95457 9.01776 9.68536 10.56861 11.37806 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.018169 B = 0.002435 C = 0.002320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1540.738225 B =11497.118546 C =12065.676518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.131 4.131 3 C 0.126 3.874 4 H 0.113 0.887 5 N -0.712 5.712 6 C 0.513 3.487 7 C -0.170 4.170 8 O -0.542 6.542 9 C 0.514 3.486 10 O -0.543 6.543 11 N -0.603 5.603 12 C 0.107 3.893 13 C 0.040 3.960 14 N -0.528 5.528 15 C 0.035 3.965 16 C 0.132 3.868 17 N -0.609 5.609 18 C -0.222 4.222 19 H 0.080 0.920 20 C -0.009 4.009 21 N -0.922 5.922 22 Si 0.912 3.088 23 H -0.289 1.289 24 H -0.290 1.290 25 H -0.280 1.280 26 C 0.126 3.874 27 C 0.037 3.963 28 C 0.117 3.883 29 H 0.051 0.949 30 H 0.063 0.937 31 H 0.057 0.943 32 H 0.069 0.931 33 H 0.080 0.920 34 H 0.410 0.590 35 H 0.076 0.924 36 H 0.094 0.906 37 H 0.096 0.904 38 H 0.082 0.918 39 H 0.087 0.913 40 H 0.088 0.912 41 H 0.041 0.959 42 H 0.100 0.900 43 H 0.030 0.970 44 H 0.069 0.931 45 H 0.253 0.747 46 H 0.045 0.955 47 H 0.037 0.963 48 H 0.048 0.952 49 H 0.093 0.907 50 H 0.076 0.924 51 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.436 -12.533 -16.104 24.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.169 4.169 3 C 0.017 3.983 4 H 0.131 0.869 5 N -0.367 5.367 6 C 0.300 3.700 7 C -0.230 4.230 8 O -0.419 6.419 9 C 0.301 3.699 10 O -0.420 6.420 11 N -0.336 5.336 12 C -0.016 4.016 13 C -0.089 4.089 14 N -0.253 5.253 15 C -0.074 4.074 16 C 0.006 3.994 17 N -0.336 5.336 18 C -0.349 4.349 19 H 0.098 0.902 20 C -0.205 4.205 21 N -0.569 5.569 22 Si 0.743 3.257 23 H -0.216 1.216 24 H -0.216 1.216 25 H -0.206 1.206 26 C 0.000 4.000 27 C -0.092 4.092 28 C -0.005 4.005 29 H 0.070 0.930 30 H 0.082 0.918 31 H 0.076 0.924 32 H 0.088 0.912 33 H 0.099 0.901 34 H 0.247 0.753 35 H 0.095 0.905 36 H 0.113 0.887 37 H 0.114 0.886 38 H 0.100 0.900 39 H 0.105 0.895 40 H 0.106 0.894 41 H 0.060 0.940 42 H 0.118 0.882 43 H 0.048 0.952 44 H 0.087 0.913 45 H 0.063 0.937 46 H 0.064 0.936 47 H 0.054 0.946 48 H 0.066 0.934 49 H 0.111 0.889 50 H 0.094 0.906 51 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -13.432 -12.585 -15.726 24.209 hybrid contribution 0.953 1.602 0.236 1.879 sum -12.479 -10.983 -15.489 22.722 Atomic orbital electron populations 1.21799 0.93832 1.01055 1.03334 1.21958 0.97803 0.93812 1.03375 1.20871 0.91751 0.95938 0.89739 0.86909 1.45918 1.17074 1.57713 1.16017 1.20786 0.81084 0.77740 0.90370 1.21839 1.03642 1.02694 0.94804 1.90741 1.50621 1.58959 1.41610 1.20520 0.90024 0.76794 0.82597 1.90675 1.64195 1.48195 1.38950 1.48112 1.07896 1.66292 1.11276 1.22076 0.94348 1.00504 0.84669 1.22408 0.90163 0.98610 0.97757 1.62039 1.02153 1.58399 1.02692 1.24300 0.96728 0.95954 0.90408 1.22941 0.89717 0.92826 0.93962 1.45824 1.34291 1.03733 1.49759 1.19008 1.07914 0.90432 1.17591 0.90175 1.24796 0.98864 0.96410 1.00439 1.69827 1.31492 1.09864 1.45692 0.86116 0.79713 0.79789 0.80128 1.21621 1.21632 1.20560 1.22647 0.92147 0.88385 0.96803 1.22590 0.99715 0.97430 0.89423 1.21841 0.78646 1.01229 0.98771 0.93003 0.91796 0.92375 0.91193 0.90130 0.75265 0.90462 0.88693 0.88551 0.90023 0.89474 0.89361 0.94030 0.88221 0.95205 0.91316 0.93687 0.93638 0.94582 0.93388 0.88855 0.90624 0.88860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.23 8.53 37.16 0.32 -0.91 16 2 C -0.13 -1.07 5.26 -26.73 -0.14 -1.21 16 3 C 0.13 1.25 1.81 -69.08 -0.12 1.13 16 4 H 0.11 1.22 6.45 -51.93 -0.33 0.89 16 5 N -0.71 -6.65 4.96 -54.93 -0.27 -6.92 16 6 C 0.51 4.92 6.54 -10.98 -0.07 4.85 16 7 C -0.17 -0.99 10.39 36.01 0.37 -0.61 16 8 O -0.54 -7.00 14.24 5.56 0.08 -6.92 16 9 C 0.51 6.20 7.05 -10.99 -0.08 6.12 16 10 O -0.54 -7.98 15.28 5.56 0.08 -7.90 16 11 N -0.60 -6.93 3.01 -172.47 -0.52 -7.45 16 12 C 0.11 1.03 5.13 -3.60 -0.02 1.01 16 13 C 0.04 0.49 5.61 -3.70 -0.02 0.47 16 14 N -0.53 -7.68 4.76 -228.24 -1.09 -8.77 16 15 C 0.03 0.63 4.03 -69.92 -0.28 0.35 16 16 C 0.13 3.06 6.81 -2.84 -0.02 3.04 16 17 N -0.61 -15.53 3.70 -177.89 -0.66 -16.19 16 18 C -0.22 -6.23 10.70 -15.06 -0.16 -6.39 16 19 H 0.08 2.17 7.83 -52.49 -0.41 1.76 16 20 C -0.01 -0.25 5.50 -17.43 -0.10 -0.34 16 21 N -0.92 -27.52 11.39 55.49 0.63 -26.89 16 22 Si 0.91 22.25 29.55 -169.99 -5.02 17.22 16 23 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 24 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 25 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 26 C 0.13 2.54 8.42 -2.97 -0.02 2.51 16 27 C 0.04 0.54 4.47 -3.70 -0.02 0.53 16 28 C 0.12 1.45 6.61 -3.61 -0.02 1.43 16 29 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.06 0.61 7.88 -51.93 -0.41 0.20 16 31 H 0.06 0.56 5.63 -51.93 -0.29 0.27 16 32 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 33 H 0.08 0.58 6.23 -51.93 -0.32 0.26 16 34 H 0.41 3.50 7.56 -40.82 -0.31 3.19 16 35 H 0.08 0.31 7.91 -51.93 -0.41 -0.10 16 36 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.09 0.70 5.22 -51.93 -0.27 0.43 16 40 H 0.09 0.97 8.04 -51.93 -0.42 0.55 16 41 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 42 H 0.10 1.79 8.04 -51.93 -0.42 1.37 16 43 H 0.03 0.72 5.65 -51.93 -0.29 0.43 16 44 H 0.07 1.80 7.17 -51.93 -0.37 1.42 16 45 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 46 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 47 H 0.04 0.70 6.22 -51.93 -0.32 0.38 16 48 H 0.05 0.82 6.45 -51.93 -0.33 0.49 16 49 H 0.09 1.45 6.06 -51.93 -0.31 1.13 16 50 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 51 H 0.09 1.23 7.05 -51.93 -0.37 0.86 16 LS Contribution 387.89 15.07 5.85 5.85 Total: -1.00 -34.07 387.89 -9.42 -43.49 By element: Atomic # 1 Polarization: 10.62 SS G_CDS: -8.12 Total: 2.51 kcal Atomic # 6 Polarization: 12.35 SS G_CDS: -0.39 Total: 11.97 kcal Atomic # 7 Polarization: -64.31 SS G_CDS: -1.90 Total: -66.22 kcal Atomic # 8 Polarization: -14.98 SS G_CDS: 0.16 Total: -14.82 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.02 Total: 17.22 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -34.07 -9.42 -43.49 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001674047831.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.901 kcal (2) G-P(sol) polarization free energy of solvation -34.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.488 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds