Wall clock time and date at job start Tue Mar 31 2020 21:35:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42903 * 113.99850 * 2 1 4 4 H 1.09008 * 109.46976 * 30.00324 * 3 2 1 5 5 C 1.50690 * 109.47589 * 270.00224 * 3 2 1 6 6 O 1.21286 * 119.99876 * 337.73537 * 5 3 2 7 7 N 1.34778 * 120.00517 * 157.73366 * 5 3 2 8 8 C 1.46499 * 119.99821 * 4.27655 * 7 5 3 9 9 C 1.46506 * 120.00090 * 184.27300 * 7 5 3 10 10 C 1.52996 * 109.46868 * 270.00064 * 9 7 5 11 11 C 1.52996 * 109.47562 * 299.99910 * 10 9 7 12 12 C 1.53001 * 109.47347 * 60.00654 * 10 9 7 13 13 C 1.53009 * 109.46713 * 180.02562 * 10 9 7 14 14 N 1.46504 * 109.46767 * 180.02562 * 13 10 9 15 15 C 1.36935 * 119.99362 * 179.97438 * 14 13 10 16 16 H 1.07996 * 120.00580 * 359.97438 * 15 14 13 17 17 C 1.38813 * 119.99771 * 179.97438 * 15 14 13 18 18 N 1.31615 * 120.00016 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 120.00122 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47251 * 90.00368 * 19 17 15 21 21 H 1.48504 * 109.47484 * 210.00162 * 19 17 15 22 22 H 1.48497 * 109.47253 * 330.00355 * 19 17 15 23 23 C 1.50701 * 109.47123 * 149.99708 * 3 2 1 24 24 C 1.39873 * 126.03754 * 45.90724 * 23 3 2 25 25 N 1.30836 * 108.20092 * 179.81439 * 24 23 3 26 26 N 1.40088 * 108.20726 * 0.43828 * 25 24 23 27 27 C 1.46497 * 126.03921 * 179.74117 * 26 25 24 28 28 C 1.34950 * 107.92278 * 359.71642 * 26 25 24 29 29 H 1.09001 * 109.47024 * 299.99354 * 1 2 3 30 30 H 1.09000 * 109.47235 * 59.99816 * 1 2 3 31 31 H 1.09001 * 109.46578 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.47180 * 275.50527 * 8 7 5 33 33 H 1.09004 * 109.47287 * 35.50412 * 8 7 5 34 34 H 1.09001 * 109.47162 * 155.50208 * 8 7 5 35 35 H 1.09003 * 109.46599 * 150.00621 * 9 7 5 36 36 H 1.09001 * 109.47036 * 30.00391 * 9 7 5 37 37 H 1.09005 * 109.46922 * 60.00396 * 11 10 9 38 38 H 1.08999 * 109.47166 * 180.02562 * 11 10 9 39 39 H 1.08992 * 109.47258 * 300.00350 * 11 10 9 40 40 H 1.09001 * 109.47319 * 59.99205 * 12 10 9 41 41 H 1.08999 * 109.47389 * 179.97438 * 12 10 9 42 42 H 1.09005 * 109.46825 * 299.99413 * 12 10 9 43 43 H 1.09001 * 109.46936 * 300.00171 * 13 10 9 44 44 H 1.08992 * 109.47224 * 60.00191 * 13 10 9 45 45 H 0.96991 * 120.00426 * 359.97438 * 14 13 10 46 46 H 0.97000 * 120.00024 * 179.97438 * 18 17 15 47 47 H 1.07993 * 125.89854 * 359.97438 * 24 23 3 48 48 H 1.09000 * 109.47187 * 269.97145 * 27 26 25 49 49 H 1.09003 * 109.47397 * 29.97304 * 27 26 25 50 50 H 1.08999 * 109.47142 * 149.97445 * 27 26 25 51 51 H 1.07997 * 126.12693 * 179.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9994 0.5139 5 6 2.2145 1.7645 -1.4207 6 8 2.2875 0.9501 -2.3165 7 7 2.3160 3.0800 -1.6960 8 6 2.3219 4.0582 -0.6054 9 6 2.4206 3.5316 -3.0857 10 6 3.8942 3.5940 -3.4921 11 6 4.6337 4.5750 -2.5802 12 6 4.5193 2.2038 -3.3594 13 6 4.0034 4.0663 -4.9434 14 7 5.4145 4.1255 -5.3327 15 6 5.7598 4.5240 -6.5965 16 1 4.9920 4.7942 -7.3063 17 6 7.0969 4.5807 -6.9653 18 7 8.0326 4.2509 -6.1006 19 14 7.5680 5.1236 -8.6895 20 1 7.7569 6.5963 -8.7104 21 1 8.8328 4.4566 -9.0903 22 1 6.4888 4.7494 -9.6385 23 6 3.3386 1.2640 0.7105 24 6 4.3408 0.3058 0.5261 25 7 5.3421 0.6052 1.3132 26 7 5.0042 1.7594 2.0317 27 6 5.8426 2.4308 3.0279 28 6 3.7702 2.1438 1.6436 29 1 -0.3633 0.5137 0.8901 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3632 -1.0277 -0.0005 32 1 1.2958 4.2949 -0.3242 33 1 2.8472 3.6413 0.2539 34 1 2.8271 4.9662 -0.9346 35 1 1.9753 4.5220 -3.1803 36 1 1.8937 2.8328 -3.7355 37 1 4.5560 4.2389 -1.5461 38 1 5.6835 4.6197 -2.8700 39 1 4.1885 5.5653 -2.6748 40 1 3.9924 1.5050 -4.0091 41 1 5.5691 2.2482 -3.6493 42 1 4.4415 1.8678 -2.3254 43 1 3.4765 3.3678 -5.5934 44 1 3.5583 5.0567 -5.0376 45 1 6.1041 3.8825 -4.6955 46 1 8.9669 4.2901 -6.3584 47 1 4.2968 -0.5343 -0.1510 48 1 5.6369 2.0162 4.0147 49 1 6.8933 2.2777 2.7813 50 1 5.6215 3.4981 3.0290 51 1 3.2247 2.9999 2.0121 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725148279.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:35:46 Heat of formation + Delta-G solvation = 27.664197 kcal Electronic energy + Delta-G solvation = -31405.494305 eV Core-core repulsion = 27343.335886 eV Total energy + Delta-G solvation = -4062.158419 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.61648 -40.13883 -38.06130 -36.75146 -35.08255 -33.64442 -33.06088 -31.51669 -30.12293 -28.59298 -27.87279 -26.79304 -26.50740 -26.11846 -25.56760 -24.44802 -22.42572 -21.36349 -20.95456 -19.43874 -18.29140 -17.72846 -17.17744 -16.99543 -16.76008 -15.77348 -15.61342 -15.56174 -15.06126 -14.73596 -14.51809 -14.30236 -13.91516 -13.67873 -13.45487 -13.33479 -13.16917 -13.08025 -12.92330 -12.83021 -12.61603 -12.54005 -12.31461 -12.10119 -12.02863 -11.60415 -11.15109 -11.05281 -10.91528 -10.76927 -10.71977 -10.68815 -10.58223 -10.16076 -10.14671 -9.84045 -9.62501 -9.60640 -9.41865 -8.79080 -8.58573 -8.47038 -6.81298 -5.68536 -2.95805 1.58445 2.25338 2.46258 2.78919 2.92087 3.48251 3.53330 3.55402 3.67168 4.33120 4.41785 4.52472 4.66253 4.67059 4.83685 4.86331 4.95762 5.03673 5.11854 5.13746 5.14947 5.22713 5.25585 5.38758 5.47270 5.48711 5.49946 5.56876 5.63751 5.71111 5.79005 6.00726 6.03416 6.19972 6.24889 6.36877 6.43359 6.54107 6.63231 6.68074 6.71319 6.81359 6.85911 6.87938 7.03701 7.11543 7.43151 7.50361 7.77343 8.28509 8.50967 9.61901 10.22040 10.56824 11.54640 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.013631 B = 0.003066 C = 0.002761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2053.625992 B = 9129.509023 C =10139.804148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.353 6.353 3 C 0.160 3.840 4 H 0.082 0.918 5 C 0.495 3.505 6 O -0.509 6.509 7 N -0.606 5.606 8 C 0.067 3.933 9 C 0.128 3.872 10 C -0.085 4.085 11 C -0.133 4.133 12 C -0.120 4.120 13 C 0.165 3.835 14 N -0.727 5.727 15 C -0.235 4.235 16 H 0.069 0.931 17 C -0.016 4.016 18 N -0.934 5.934 19 Si 0.906 3.094 20 H -0.291 1.291 21 H -0.292 1.292 22 H -0.282 1.282 23 C -0.238 4.238 24 C 0.087 3.913 25 N -0.292 5.292 26 N -0.372 5.372 27 C 0.101 3.899 28 C 0.069 3.931 29 H 0.041 0.959 30 H 0.043 0.957 31 H 0.090 0.910 32 H 0.053 0.947 33 H 0.067 0.933 34 H 0.082 0.918 35 H 0.074 0.926 36 H 0.082 0.918 37 H 0.043 0.957 38 H 0.065 0.935 39 H 0.047 0.953 40 H 0.055 0.945 41 H 0.056 0.944 42 H 0.040 0.960 43 H 0.019 0.981 44 H 0.016 0.984 45 H 0.385 0.615 46 H 0.254 0.746 47 H 0.187 0.813 48 H 0.075 0.925 49 H 0.092 0.908 50 H 0.088 0.912 51 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.354 -1.523 23.507 28.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.269 6.269 3 C 0.098 3.902 4 H 0.100 0.900 5 C 0.281 3.719 6 O -0.383 6.383 7 N -0.341 5.341 8 C -0.077 4.077 9 C 0.005 3.995 10 C -0.086 4.086 11 C -0.190 4.190 12 C -0.178 4.178 13 C 0.037 3.963 14 N -0.373 5.373 15 C -0.367 4.367 16 H 0.087 0.913 17 C -0.211 4.211 18 N -0.584 5.584 19 Si 0.737 3.263 20 H -0.219 1.219 21 H -0.219 1.219 22 H -0.208 1.208 23 C -0.250 4.250 24 C -0.100 4.100 25 N -0.113 5.113 26 N -0.153 5.153 27 C -0.040 4.040 28 C -0.078 4.078 29 H 0.060 0.940 30 H 0.061 0.939 31 H 0.109 0.891 32 H 0.071 0.929 33 H 0.085 0.915 34 H 0.100 0.900 35 H 0.093 0.907 36 H 0.100 0.900 37 H 0.062 0.938 38 H 0.084 0.916 39 H 0.066 0.934 40 H 0.074 0.926 41 H 0.075 0.925 42 H 0.059 0.941 43 H 0.037 0.963 44 H 0.034 0.966 45 H 0.220 0.780 46 H 0.064 0.936 47 H 0.204 0.796 48 H 0.094 0.906 49 H 0.110 0.890 50 H 0.107 0.893 51 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -13.935 -2.359 23.373 27.314 hybrid contribution -0.407 0.917 -0.997 1.414 sum -14.342 -1.442 22.376 26.617 Atomic orbital electron populations 1.22861 0.80785 1.03278 0.99815 1.88037 1.19643 1.24868 1.94400 1.19913 0.92131 0.86512 0.91677 0.90048 1.21070 0.77158 0.82291 0.91366 1.90738 1.47785 1.52361 1.47409 1.47771 1.73124 1.05760 1.07443 1.22074 1.01281 0.93801 0.90495 1.21565 0.96937 0.99836 0.81127 1.21094 0.94006 0.96789 0.96706 1.21848 1.01722 0.97659 0.97820 1.21699 1.00874 0.94812 1.00401 1.20585 0.88311 0.96684 0.90702 1.42391 1.00740 1.80921 1.13200 1.19245 0.91383 1.36398 0.89629 0.91302 1.24715 0.95751 1.02716 0.97954 1.69662 0.99473 1.55081 1.34141 0.86198 0.77656 0.78020 0.84387 1.21878 1.21851 1.20817 1.19374 0.98126 1.01507 1.06028 1.23783 0.89848 0.99148 0.97180 1.77503 1.23162 1.00292 1.10342 1.48501 1.12912 1.21562 1.32340 1.21896 0.95998 0.96656 0.89483 1.22165 0.88050 1.00283 0.97348 0.94013 0.93866 0.89127 0.92895 0.91483 0.89964 0.90718 0.89955 0.93788 0.91639 0.93421 0.92594 0.92540 0.94055 0.96346 0.96631 0.78008 0.93634 0.79632 0.90640 0.88973 0.89348 0.80661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.81 101.05 1.09 1.34 16 2 O -0.35 -4.30 9.84 -54.08 -0.53 -4.83 16 3 C 0.16 1.76 2.16 -29.04 -0.06 1.70 16 4 H 0.08 0.63 6.97 -51.92 -0.36 0.27 16 5 C 0.50 6.83 5.40 -10.99 -0.06 6.77 16 6 O -0.51 -9.11 14.10 -13.29 -0.19 -9.30 16 7 N -0.61 -7.32 2.40 -181.57 -0.44 -7.75 16 8 C 0.07 0.54 8.42 59.85 0.50 1.04 16 9 C 0.13 1.81 4.57 -4.04 -0.02 1.79 16 10 C -0.08 -1.47 0.60 -154.51 -0.09 -1.56 16 11 C -0.13 -2.17 7.07 37.16 0.26 -1.91 16 12 C -0.12 -2.36 6.91 37.16 0.26 -2.10 16 13 C 0.17 3.50 5.15 -4.04 -0.02 3.48 16 14 N -0.73 -19.08 5.00 -59.91 -0.30 -19.38 16 15 C -0.24 -6.80 9.99 -15.06 -0.15 -6.95 16 16 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 17 C -0.02 -0.47 5.50 -17.43 -0.10 -0.56 16 18 N -0.93 -29.08 13.06 55.49 0.72 -28.36 16 19 Si 0.91 23.07 29.55 -169.99 -5.02 18.04 16 20 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 21 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 22 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 23 C -0.24 -2.69 4.66 -105.05 -0.49 -3.18 16 24 C 0.09 1.18 11.80 -17.36 -0.20 0.97 16 25 N -0.29 -3.98 12.58 30.62 0.39 -3.60 16 26 N -0.37 -3.74 4.01 -68.16 -0.27 -4.01 16 27 C 0.10 0.57 11.47 59.85 0.69 1.26 16 28 C 0.07 0.60 9.71 -17.22 -0.17 0.43 16 29 H 0.04 0.26 8.09 -51.93 -0.42 -0.16 16 30 H 0.04 0.39 8.14 -51.93 -0.42 -0.04 16 31 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 32 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.07 0.47 3.89 -51.93 -0.20 0.26 16 34 H 0.08 0.66 6.30 -51.93 -0.33 0.34 16 35 H 0.07 0.90 8.07 -51.93 -0.42 0.48 16 36 H 0.08 1.28 7.48 -51.93 -0.39 0.89 16 37 H 0.04 0.63 6.08 -51.93 -0.32 0.31 16 38 H 0.06 1.29 6.86 -51.93 -0.36 0.93 16 39 H 0.05 0.71 8.07 -51.93 -0.42 0.29 16 40 H 0.05 1.17 7.65 -51.93 -0.40 0.77 16 41 H 0.06 1.25 6.86 -51.93 -0.36 0.89 16 42 H 0.04 0.78 6.08 -51.93 -0.32 0.46 16 43 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.02 0.33 8.14 -51.93 -0.42 -0.10 16 45 H 0.38 10.63 5.36 -40.82 -0.22 10.41 16 46 H 0.25 7.64 8.31 -40.82 -0.34 7.30 16 47 H 0.19 2.52 8.06 -52.49 -0.42 2.10 16 48 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 49 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 50 H 0.09 0.28 8.14 -51.93 -0.42 -0.15 16 51 H 0.18 0.76 7.25 -52.49 -0.38 0.38 16 LS Contribution 400.40 15.07 6.03 6.03 Total: -1.00 -37.57 400.40 -6.40 -43.96 By element: Atomic # 1 Polarization: 14.91 SS G_CDS: -8.23 Total: 6.68 kcal Atomic # 6 Polarization: 1.07 SS G_CDS: 1.44 Total: 2.51 kcal Atomic # 7 Polarization: -63.20 SS G_CDS: 0.10 Total: -63.10 kcal Atomic # 8 Polarization: -13.41 SS G_CDS: -0.72 Total: -14.13 kcal Atomic # 14 Polarization: 23.07 SS G_CDS: -5.02 Total: 18.04 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -37.57 -6.40 -43.96 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725148279.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.627 kcal (2) G-P(sol) polarization free energy of solvation -37.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.962 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds