Wall clock time and date at job start Tue Mar 31 2020 21:35:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42903 * 113.99850 * 2 1 4 4 H 1.09008 * 109.46976 * 30.00324 * 3 2 1 5 5 C 1.50690 * 109.47589 * 270.00224 * 3 2 1 6 6 O 1.21286 * 119.99876 * 337.73537 * 5 3 2 7 7 N 1.34778 * 120.00517 * 157.73366 * 5 3 2 8 8 C 1.46499 * 119.99821 * 4.27655 * 7 5 3 9 9 C 1.46506 * 120.00090 * 184.27300 * 7 5 3 10 10 C 1.52996 * 109.46868 * 270.00064 * 9 7 5 11 11 C 1.52996 * 109.47562 * 299.99910 * 10 9 7 12 12 C 1.53001 * 109.47347 * 60.00654 * 10 9 7 13 13 C 1.53009 * 109.46713 * 180.02562 * 10 9 7 14 14 N 1.46504 * 109.46767 * 180.02562 * 13 10 9 15 15 C 1.36935 * 119.99362 * 179.97438 * 14 13 10 16 16 H 1.07996 * 120.00580 * 359.97438 * 15 14 13 17 17 C 1.38813 * 119.99771 * 179.97438 * 15 14 13 18 18 N 1.31615 * 120.00016 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 120.00122 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47251 * 90.00368 * 19 17 15 21 21 H 1.48504 * 109.47484 * 210.00162 * 19 17 15 22 22 H 1.48497 * 109.47253 * 330.00355 * 19 17 15 23 23 C 1.50701 * 109.47123 * 149.99708 * 3 2 1 24 24 C 1.39873 * 126.03754 * 45.90724 * 23 3 2 25 25 N 1.30836 * 108.20092 * 179.81439 * 24 23 3 26 26 N 1.40088 * 108.20726 * 0.43828 * 25 24 23 27 27 C 1.46497 * 126.03921 * 179.74117 * 26 25 24 28 28 C 1.34950 * 107.92278 * 359.71642 * 26 25 24 29 29 H 1.09001 * 109.47024 * 299.99354 * 1 2 3 30 30 H 1.09000 * 109.47235 * 59.99816 * 1 2 3 31 31 H 1.09001 * 109.46578 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.47180 * 275.50527 * 8 7 5 33 33 H 1.09004 * 109.47287 * 35.50412 * 8 7 5 34 34 H 1.09001 * 109.47162 * 155.50208 * 8 7 5 35 35 H 1.09003 * 109.46599 * 150.00621 * 9 7 5 36 36 H 1.09001 * 109.47036 * 30.00391 * 9 7 5 37 37 H 1.09005 * 109.46922 * 60.00396 * 11 10 9 38 38 H 1.08999 * 109.47166 * 180.02562 * 11 10 9 39 39 H 1.08992 * 109.47258 * 300.00350 * 11 10 9 40 40 H 1.09001 * 109.47319 * 59.99205 * 12 10 9 41 41 H 1.08999 * 109.47389 * 179.97438 * 12 10 9 42 42 H 1.09005 * 109.46825 * 299.99413 * 12 10 9 43 43 H 1.09001 * 109.46936 * 300.00171 * 13 10 9 44 44 H 1.08992 * 109.47224 * 60.00191 * 13 10 9 45 45 H 0.96991 * 120.00426 * 359.97438 * 14 13 10 46 46 H 0.97000 * 120.00024 * 179.97438 * 18 17 15 47 47 H 1.07993 * 125.89854 * 359.97438 * 24 23 3 48 48 H 1.09000 * 109.47187 * 269.97145 * 27 26 25 49 49 H 1.09003 * 109.47397 * 29.97304 * 27 26 25 50 50 H 1.08999 * 109.47142 * 149.97445 * 27 26 25 51 51 H 1.07997 * 126.12693 * 179.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9994 0.5139 5 6 2.2145 1.7645 -1.4207 6 8 2.2875 0.9501 -2.3165 7 7 2.3160 3.0800 -1.6960 8 6 2.3219 4.0582 -0.6054 9 6 2.4206 3.5316 -3.0857 10 6 3.8942 3.5940 -3.4921 11 6 4.6337 4.5750 -2.5802 12 6 4.5193 2.2038 -3.3594 13 6 4.0034 4.0663 -4.9434 14 7 5.4145 4.1255 -5.3327 15 6 5.7598 4.5240 -6.5965 16 1 4.9920 4.7942 -7.3063 17 6 7.0969 4.5807 -6.9653 18 7 8.0326 4.2509 -6.1006 19 14 7.5680 5.1236 -8.6895 20 1 7.7569 6.5963 -8.7104 21 1 8.8328 4.4566 -9.0903 22 1 6.4888 4.7494 -9.6385 23 6 3.3386 1.2640 0.7105 24 6 4.3408 0.3058 0.5261 25 7 5.3421 0.6052 1.3132 26 7 5.0042 1.7594 2.0317 27 6 5.8426 2.4308 3.0279 28 6 3.7702 2.1438 1.6436 29 1 -0.3633 0.5137 0.8901 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3632 -1.0277 -0.0005 32 1 1.2958 4.2949 -0.3242 33 1 2.8472 3.6413 0.2539 34 1 2.8271 4.9662 -0.9346 35 1 1.9753 4.5220 -3.1803 36 1 1.8937 2.8328 -3.7355 37 1 4.5560 4.2389 -1.5461 38 1 5.6835 4.6197 -2.8700 39 1 4.1885 5.5653 -2.6748 40 1 3.9924 1.5050 -4.0091 41 1 5.5691 2.2482 -3.6493 42 1 4.4415 1.8678 -2.3254 43 1 3.4765 3.3678 -5.5934 44 1 3.5583 5.0567 -5.0376 45 1 6.1041 3.8825 -4.6955 46 1 8.9669 4.2901 -6.3584 47 1 4.2968 -0.5343 -0.1510 48 1 5.6369 2.0162 4.0147 49 1 6.8933 2.2777 2.7813 50 1 5.6215 3.4981 3.0290 51 1 3.2247 2.9999 2.0121 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725148279.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:35:45 Heat of formation + Delta-G solvation = 1.058248 kcal Electronic energy + Delta-G solvation = -31406.648026 eV Core-core repulsion = 27343.335886 eV Total energy + Delta-G solvation = -4063.312140 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.42637 -41.16308 -39.16331 -37.95635 -36.38407 -34.95265 -34.26720 -32.57609 -31.96774 -29.32671 -28.85893 -28.14705 -27.35903 -27.18429 -27.04400 -25.65191 -24.21646 -22.13471 -21.82389 -20.46834 -19.80823 -19.12242 -18.49643 -17.89028 -17.66708 -16.80746 -16.72192 -16.40807 -16.27302 -15.99812 -15.68632 -15.35444 -15.27267 -15.19374 -14.84493 -14.33155 -14.21246 -14.04927 -13.92290 -13.79531 -13.67767 -13.54943 -13.44825 -13.15933 -12.99954 -12.85540 -12.79532 -12.56848 -12.45830 -12.29440 -12.24472 -12.11192 -11.69640 -11.63886 -11.54885 -11.50860 -11.39784 -10.93886 -10.45180 -10.31648 -9.50125 -9.40390 -8.97919 -7.94743 -5.22886 0.87001 1.44979 1.47766 1.48785 1.56181 1.63780 1.85236 2.02340 2.56004 2.93103 3.38332 3.64114 3.68459 3.84122 3.86951 3.94837 3.98783 4.04912 4.23926 4.26370 4.29981 4.40117 4.48476 4.49503 4.53757 4.57805 4.59863 4.68148 4.75164 4.80933 4.82817 4.83991 4.87387 4.90272 4.91941 4.94277 4.99403 5.15389 5.16207 5.20637 5.43406 5.48058 5.51719 5.54386 5.63014 6.05700 6.13749 6.27293 6.52351 6.66883 7.30373 7.33484 8.11127 8.34658 9.29185 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.013631 B = 0.003066 C = 0.002761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2053.625992 B = 9129.509023 C =10139.804148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.383 6.383 3 C 0.169 3.831 4 H 0.125 0.875 5 C 0.488 3.512 6 O -0.565 6.565 7 N -0.602 5.602 8 C 0.055 3.945 9 C 0.136 3.864 10 C -0.075 4.075 11 C -0.122 4.122 12 C -0.102 4.102 13 C 0.163 3.837 14 N -0.740 5.740 15 C -0.244 4.244 16 H 0.075 0.925 17 C -0.078 4.078 18 N -0.972 5.972 19 Si 0.975 3.025 20 H -0.283 1.283 21 H -0.297 1.297 22 H -0.271 1.271 23 C -0.259 4.259 24 C 0.060 3.940 25 N -0.336 5.336 26 N -0.371 5.371 27 C 0.090 3.910 28 C 0.093 3.907 29 H 0.073 0.927 30 H 0.035 0.965 31 H 0.095 0.905 32 H 0.090 0.910 33 H 0.080 0.920 34 H 0.087 0.913 35 H 0.108 0.892 36 H 0.062 0.938 37 H 0.068 0.932 38 H 0.025 0.975 39 H 0.069 0.931 40 H 0.032 0.968 41 H 0.019 0.981 42 H 0.046 0.954 43 H 0.006 0.994 44 H 0.033 0.967 45 H 0.374 0.626 46 H 0.250 0.750 47 H 0.163 0.837 48 H 0.094 0.906 49 H 0.081 0.919 50 H 0.124 0.876 51 H 0.232 0.768 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.670 1.521 25.838 31.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.301 6.301 3 C 0.107 3.893 4 H 0.143 0.857 5 C 0.275 3.725 6 O -0.443 6.443 7 N -0.336 5.336 8 C -0.086 4.086 9 C 0.012 3.988 10 C -0.077 4.077 11 C -0.179 4.179 12 C -0.159 4.159 13 C 0.036 3.964 14 N -0.383 5.383 15 C -0.376 4.376 16 H 0.093 0.907 17 C -0.270 4.270 18 N -0.623 5.623 19 Si 0.804 3.196 20 H -0.210 1.210 21 H -0.224 1.224 22 H -0.196 1.196 23 C -0.272 4.272 24 C -0.125 4.125 25 N -0.158 5.158 26 N -0.152 5.152 27 C -0.049 4.049 28 C -0.055 4.055 29 H 0.091 0.909 30 H 0.054 0.946 31 H 0.113 0.887 32 H 0.108 0.892 33 H 0.099 0.901 34 H 0.106 0.894 35 H 0.126 0.874 36 H 0.081 0.919 37 H 0.087 0.913 38 H 0.044 0.956 39 H 0.088 0.912 40 H 0.051 0.949 41 H 0.038 0.962 42 H 0.065 0.935 43 H 0.024 0.976 44 H 0.051 0.949 45 H 0.207 0.793 46 H 0.059 0.941 47 H 0.181 0.819 48 H 0.112 0.888 49 H 0.099 0.901 50 H 0.142 0.858 51 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -16.294 0.713 25.739 30.471 hybrid contribution 0.287 -0.046 -1.642 1.667 sum -16.007 0.667 24.097 28.937 Atomic orbital electron populations 1.23042 0.79194 1.04118 1.00862 1.88017 1.21574 1.26110 1.94363 1.19955 0.92772 0.86853 0.89741 0.85723 1.21807 0.76021 0.82344 0.92285 1.90717 1.50314 1.53972 1.49265 1.47854 1.72048 1.06153 1.07528 1.22433 1.04072 0.92755 0.89320 1.21355 0.93787 1.01146 0.82478 1.21010 0.96724 0.95086 0.94839 1.21741 0.99036 0.98466 0.98643 1.21494 0.98277 0.96252 0.99889 1.20751 0.85520 0.97175 0.92945 1.42596 1.02623 1.80707 1.12385 1.19674 0.91754 1.35402 0.90744 0.90676 1.25581 0.95795 1.03584 1.02023 1.69837 0.99492 1.56778 1.36171 0.85108 0.77072 0.77657 0.79737 1.20974 1.22392 1.19579 1.19523 0.98082 1.01961 1.07584 1.23686 0.91366 0.99840 0.97656 1.77408 1.24003 1.02711 1.11712 1.48879 1.13876 1.20424 1.32042 1.22292 0.95016 0.98469 0.89167 1.22911 0.87118 1.00274 0.95209 0.90903 0.94626 0.88674 0.89176 0.90124 0.89418 0.87357 0.91947 0.91298 0.95611 0.91193 0.94922 0.96175 0.93546 0.97568 0.94938 0.79259 0.94115 0.81941 0.88789 0.90067 0.85754 0.75226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.37 10.81 113.37 1.23 1.60 16 2 O -0.38 -9.14 9.84 -130.96 -1.29 -10.43 16 3 C 0.17 3.34 2.16 29.10 0.06 3.41 16 4 H 0.13 1.30 6.97 -2.38 -0.02 1.29 16 5 C 0.49 12.98 5.40 87.65 0.47 13.46 16 6 O -0.56 -21.05 14.10 14.97 0.21 -20.83 16 7 N -0.60 -12.92 2.40 -846.76 -2.03 -14.95 16 8 C 0.06 0.59 8.42 127.77 1.08 1.66 16 9 C 0.14 3.60 4.57 86.38 0.39 3.99 16 10 C -0.08 -2.59 0.60 -52.18 -0.03 -2.63 16 11 C -0.12 -3.79 7.07 71.98 0.51 -3.28 16 12 C -0.10 -4.21 6.91 71.98 0.50 -3.71 16 13 C 0.16 6.94 5.15 86.38 0.44 7.38 16 14 N -0.74 -39.81 5.00 -343.44 -1.72 -41.53 16 15 C -0.24 -14.28 9.99 84.03 0.84 -13.44 16 16 H 0.08 4.21 7.83 -2.91 -0.02 4.19 16 17 C -0.08 -4.67 5.50 84.86 0.47 -4.20 16 18 N -0.97 -62.13 13.06 21.65 0.28 -61.84 16 19 Si 0.98 47.93 29.55 68.60 2.03 49.96 16 20 H -0.28 -13.43 7.11 99.48 0.71 -12.72 16 21 H -0.30 -14.74 7.11 99.48 0.71 -14.03 16 22 H -0.27 -12.65 7.11 99.48 0.71 -11.94 16 23 C -0.26 -5.43 4.66 -20.14 -0.09 -5.52 16 24 C 0.06 1.70 11.80 85.24 1.01 2.70 16 25 N -0.34 -9.36 12.58 -57.03 -0.72 -10.07 16 26 N -0.37 -6.62 4.01 -369.57 -1.48 -8.10 16 27 C 0.09 0.75 11.47 127.77 1.47 2.22 16 28 C 0.09 1.25 9.71 83.54 0.81 2.06 16 29 H 0.07 0.66 8.09 -2.39 -0.02 0.65 16 30 H 0.03 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.09 0.39 8.14 -2.39 -0.02 0.37 16 33 H 0.08 0.64 3.89 -2.39 -0.01 0.63 16 34 H 0.09 0.90 6.30 -2.39 -0.02 0.89 16 35 H 0.11 2.18 8.07 -2.39 -0.02 2.16 16 36 H 0.06 1.93 7.48 -2.39 -0.02 1.91 16 37 H 0.07 1.78 6.08 -2.38 -0.01 1.76 16 38 H 0.02 1.00 6.86 -2.39 -0.02 0.98 16 39 H 0.07 1.87 8.07 -2.39 -0.02 1.85 16 40 H 0.03 1.46 7.65 -2.39 -0.02 1.44 16 41 H 0.02 0.93 6.86 -2.39 -0.02 0.92 16 42 H 0.05 1.84 6.08 -2.38 -0.01 1.82 16 43 H 0.01 0.29 8.14 -2.39 -0.02 0.27 16 44 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 45 H 0.37 21.60 5.36 -92.71 -0.50 21.11 16 46 H 0.25 15.46 8.31 -92.71 -0.77 14.69 16 47 H 0.16 5.07 8.06 -2.91 -0.02 5.04 16 48 H 0.09 0.47 8.14 -2.39 -0.02 0.45 16 49 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 50 H 0.12 0.17 8.14 -2.39 -0.02 0.15 16 51 H 0.23 0.32 7.25 -2.91 -0.02 0.29 16 Total: -1.00 -88.78 400.40 4.86 -83.91 By element: Atomic # 1 Polarization: 27.75 SS G_CDS: 0.43 Total: 28.19 kcal Atomic # 6 Polarization: -3.44 SS G_CDS: 9.15 Total: 5.71 kcal Atomic # 7 Polarization: -130.83 SS G_CDS: -5.67 Total: -136.50 kcal Atomic # 8 Polarization: -30.18 SS G_CDS: -1.08 Total: -31.26 kcal Atomic # 14 Polarization: 47.93 SS G_CDS: 2.03 Total: 49.96 kcal Total: -88.78 4.86 -83.91 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725148279.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.970 kcal (2) G-P(sol) polarization free energy of solvation -88.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.912 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds