Wall clock time and date at job start Tue Mar 31 2020 22:09:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09001 * 109.46644 * 2 1 4 4 N 1.46903 * 109.47000 * 119.99842 * 2 1 3 5 5 C 1.46904 * 110.99712 * 205.29349 * 4 2 1 6 6 H 1.08996 * 109.47021 * 325.65133 * 5 4 2 7 7 C 1.52998 * 109.46854 * 85.64809 * 5 4 2 8 8 C 1.50697 * 109.46992 * 205.64983 * 5 4 2 9 9 O 1.21283 * 119.99706 * 359.97438 * 8 5 4 10 10 N 1.34780 * 119.99974 * 179.97438 * 8 5 4 11 11 C 1.46494 * 119.99774 * 0.02562 * 10 8 5 12 12 C 1.46497 * 119.99660 * 179.97438 * 10 8 5 13 13 C 1.50700 * 109.46743 * 90.00813 * 12 10 8 14 14 H 1.08001 * 120.00345 * 359.97438 * 13 12 10 15 15 C 1.37881 * 119.99994 * 180.02562 * 13 12 10 16 16 N 1.31513 * 119.99918 * 179.97438 * 15 13 12 17 17 Si 1.86804 * 119.99866 * 359.97438 * 15 13 12 18 18 H 1.48503 * 109.46617 * 90.00545 * 17 15 13 19 19 H 1.48495 * 109.46985 * 210.00226 * 17 15 13 20 20 H 1.48499 * 109.47389 * 330.00798 * 17 15 13 21 21 C 1.50698 * 109.47099 * 239.99945 * 2 1 3 22 22 N 1.31124 * 126.55249 * 105.02350 * 21 2 1 23 23 C 1.34493 * 105.61540 * 179.97438 * 22 21 2 24 24 C 1.50699 * 126.28447 * 180.26493 * 23 22 21 25 25 C 1.53005 * 109.46809 * 179.70873 * 24 23 22 26 26 C 1.53005 * 109.47303 * 299.70610 * 24 23 22 27 27 C 1.52996 * 109.47482 * 59.71394 * 24 23 22 28 28 N 1.29948 * 107.42359 * 0.02562 * 23 22 21 29 29 O 1.21299 * 110.25078 * 359.97438 * 28 23 22 30 30 H 1.08996 * 109.46874 * 184.25050 * 1 2 3 31 31 H 1.09001 * 109.47049 * 304.24085 * 1 2 3 32 32 H 1.08994 * 109.47224 * 64.24592 * 1 2 3 33 33 H 1.00901 * 111.00143 * 329.24469 * 4 2 1 34 34 H 1.08994 * 109.47782 * 307.83527 * 7 5 4 35 35 H 1.09001 * 109.47238 * 67.84153 * 7 5 4 36 36 H 1.09009 * 109.46739 * 187.83292 * 7 5 4 37 37 H 1.09001 * 109.47572 * 89.99794 * 11 10 8 38 38 H 1.09004 * 109.46706 * 209.99527 * 11 10 8 39 39 H 1.08999 * 109.47464 * 329.99376 * 11 10 8 40 40 H 1.08996 * 109.46827 * 210.00061 * 12 10 8 41 41 H 1.08999 * 109.47573 * 330.00397 * 12 10 8 42 42 H 0.97004 * 119.99711 * 179.97438 * 16 15 13 43 43 H 1.09000 * 109.47261 * 60.00516 * 25 24 23 44 44 H 1.09006 * 109.47082 * 179.97438 * 25 24 23 45 45 H 1.08996 * 109.47647 * 300.00038 * 25 24 23 46 46 H 1.09003 * 109.46714 * 60.00363 * 26 24 23 47 47 H 1.08999 * 109.47040 * 180.02562 * 26 24 23 48 48 H 1.09001 * 109.47368 * 300.00492 * 26 24 23 49 49 H 1.09001 * 109.47462 * 59.99286 * 27 24 23 50 50 H 1.08999 * 109.47588 * 179.97438 * 27 24 23 51 51 H 1.09003 * 109.46802 * 299.99800 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6925 1.1995 5 6 3.3643 -0.2265 1.5643 6 1 3.9255 0.0077 0.6598 7 6 3.2510 1.0277 2.4332 8 6 4.0791 -1.3076 2.3333 9 8 3.5230 -2.3621 2.5559 10 7 5.3363 -1.1024 2.7736 11 6 6.0077 0.1716 2.5051 12 6 6.0310 -2.1532 3.5216 13 6 6.7812 -3.0406 2.5620 14 1 6.7439 -2.8420 1.5011 15 6 7.5143 -4.1067 3.0384 16 7 8.1686 -4.8814 2.2009 17 14 7.5783 -4.4507 4.8734 18 1 6.4702 -5.3673 5.2440 19 1 8.8782 -5.0828 5.2135 20 1 7.4370 -3.1756 5.6213 21 6 2.0324 -0.7104 -1.2304 22 7 2.5501 -0.1520 -2.2979 23 6 2.8519 -1.1670 -3.1272 24 6 3.4790 -1.0470 -4.4922 25 6 3.6587 -2.4417 -5.0952 26 6 2.5718 -0.2125 -5.3987 27 6 4.8431 -0.3652 -4.3688 28 7 2.5082 -2.2703 -2.5329 29 8 2.0355 -2.0300 -1.4420 30 1 -0.3633 -1.0248 0.0762 31 1 -0.3633 0.5782 0.8496 32 1 -0.3633 0.4465 -0.9255 33 1 1.3771 -0.5807 1.9693 34 1 2.6159 1.7595 1.9341 35 1 2.8140 0.7642 3.3964 36 1 4.2426 1.4530 2.5884 37 1 5.8040 0.8682 3.3184 38 1 7.0825 0.0068 2.4286 39 1 5.6363 0.5878 1.5687 40 1 6.7330 -1.6982 4.2202 41 1 5.3032 -2.7481 4.0735 42 1 8.6847 -5.6312 2.5362 43 1 2.6869 -2.9274 -5.1833 44 1 4.1119 -2.3549 -6.0828 45 1 4.3049 -3.0362 -4.4495 46 1 2.4438 0.7811 -4.9691 47 1 3.0251 -0.1261 -6.3862 48 1 1.6000 -0.6983 -5.4867 49 1 5.4893 -0.9597 -3.7230 50 1 5.2968 -0.2788 -5.3561 51 1 4.7150 0.6284 -3.9392 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000185189581.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:09:13 Heat of formation + Delta-G solvation = 37.796747 kcal Electronic energy + Delta-G solvation = -30953.340559 eV Core-core repulsion = 26891.621520 eV Total energy + Delta-G solvation = -4061.719039 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -45.43041 -39.55423 -37.74691 -37.26521 -34.91000 -34.77112 -33.20166 -32.33705 -31.03164 -28.89574 -27.75380 -27.51839 -27.46256 -26.16946 -24.61573 -24.41480 -23.94761 -21.97301 -21.59397 -19.37731 -18.59669 -17.90125 -17.18655 -16.91198 -16.51221 -16.08314 -15.84425 -15.31040 -14.91808 -14.63977 -14.46040 -14.31233 -14.08743 -13.85119 -13.44385 -13.18876 -12.70089 -12.64063 -12.54657 -12.49947 -12.40634 -12.33541 -12.20001 -12.07322 -11.95852 -11.85374 -11.62566 -11.61635 -11.55695 -11.45029 -11.29704 -11.27677 -10.99473 -10.85486 -10.79309 -10.49962 -10.12279 -9.81416 -9.51283 -9.10482 -8.55927 -8.52824 -7.66401 -6.05252 -4.04005 1.29355 2.29381 2.93087 3.28138 3.31706 3.37120 3.38159 3.39138 3.65144 3.97802 4.27218 4.42127 4.55786 4.60662 4.71985 4.79769 4.83688 4.90600 5.01094 5.07381 5.10305 5.27132 5.30831 5.36935 5.40473 5.47098 5.49581 5.57131 5.58431 5.61958 5.64673 5.67321 5.71311 5.77766 5.79963 5.82580 5.90686 5.93686 6.08884 6.11498 6.17087 6.17578 6.55078 6.75190 6.97206 7.14618 7.36993 7.64110 8.27841 8.34210 8.50515 8.97344 9.05262 9.54763 11.08326 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.010705 B = 0.003509 C = 0.002959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2615.015412 B = 7977.272327 C = 9460.892519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.179 3.821 3 H 0.093 0.907 4 N -0.657 5.657 5 C 0.065 3.935 6 H 0.096 0.904 7 C -0.188 4.188 8 C 0.512 3.488 9 O -0.515 6.515 10 N -0.600 5.600 11 C 0.082 3.918 12 C 0.218 3.782 13 C -0.528 4.528 14 H 0.072 0.928 15 C 0.072 3.928 16 N -0.897 5.897 17 Si 0.877 3.123 18 H -0.273 1.273 19 H -0.285 1.285 20 H -0.266 1.266 21 C 0.191 3.809 22 N -0.484 5.484 23 C 0.172 3.828 24 C 0.026 3.974 25 C -0.141 4.141 26 C -0.135 4.135 27 C -0.139 4.139 28 N -0.379 5.379 29 O 0.105 5.895 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.071 0.929 33 H 0.363 0.637 34 H 0.062 0.938 35 H 0.066 0.934 36 H 0.082 0.918 37 H 0.048 0.952 38 H 0.075 0.925 39 H 0.058 0.942 40 H 0.029 0.971 41 H 0.036 0.964 42 H 0.264 0.736 43 H 0.060 0.940 44 H 0.067 0.933 45 H 0.064 0.936 46 H 0.065 0.935 47 H 0.068 0.932 48 H 0.054 0.946 49 H 0.060 0.940 50 H 0.068 0.932 51 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.562 17.143 -9.124 23.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.067 3.933 3 H 0.111 0.889 4 N -0.291 5.291 5 C -0.048 4.048 6 H 0.114 0.886 7 C -0.247 4.247 8 C 0.297 3.703 9 O -0.390 6.390 10 N -0.333 5.333 11 C -0.062 4.062 12 C 0.097 3.903 13 C -0.567 4.567 14 H 0.091 0.909 15 C -0.130 4.130 16 N -0.536 5.536 17 Si 0.704 3.296 18 H -0.199 1.199 19 H -0.211 1.211 20 H -0.191 1.191 21 C -0.031 4.031 22 N -0.218 5.218 23 C -0.101 4.101 24 C 0.024 3.976 25 C -0.199 4.199 26 C -0.193 4.193 27 C -0.197 4.197 28 N -0.083 5.083 29 O 0.045 5.955 30 H 0.097 0.903 31 H 0.096 0.904 32 H 0.090 0.910 33 H 0.186 0.814 34 H 0.080 0.920 35 H 0.085 0.915 36 H 0.100 0.900 37 H 0.066 0.934 38 H 0.093 0.907 39 H 0.076 0.924 40 H 0.047 0.953 41 H 0.054 0.946 42 H 0.074 0.926 43 H 0.079 0.921 44 H 0.086 0.914 45 H 0.083 0.917 46 H 0.085 0.915 47 H 0.087 0.913 48 H 0.074 0.926 49 H 0.079 0.921 50 H 0.087 0.913 51 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -13.266 15.366 -9.955 22.610 hybrid contribution 0.129 0.543 1.363 1.472 sum -13.137 15.909 -8.592 22.349 Atomic orbital electron populations 1.22007 0.91388 1.04439 1.03461 1.19861 0.95762 0.94001 0.83718 0.88917 1.59785 1.03206 1.59356 1.06786 1.21583 0.90760 0.93274 0.99162 0.88582 1.22665 1.04314 0.97110 1.00597 1.20026 0.81852 0.88091 0.80315 1.90683 1.66085 1.26377 1.55839 1.47793 1.13630 1.16155 1.55736 1.21791 0.99414 0.85716 0.99285 1.19633 0.92097 0.86345 0.92181 1.21332 1.28787 1.11448 0.95122 0.90943 1.24866 0.94953 0.95437 0.97768 1.69906 1.31891 1.17342 1.34453 0.86840 0.77711 0.79138 0.85919 1.19874 1.21102 1.19090 1.28695 0.95722 0.81601 0.97066 1.71736 1.17173 1.30984 1.01921 1.25666 1.01030 0.83754 0.99686 1.18951 0.95351 0.97845 0.85461 1.21844 1.02792 0.94354 1.00878 1.21836 0.98768 0.99952 0.98761 1.21862 0.94252 1.01044 1.02541 1.74685 1.15114 1.23939 0.94589 1.85387 1.57178 1.26523 1.26427 0.90299 0.90385 0.90966 0.81372 0.91951 0.91518 0.89960 0.93397 0.90667 0.92358 0.95298 0.94568 0.92596 0.92076 0.91371 0.91654 0.91550 0.91340 0.92640 0.92134 0.91297 0.91535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 9.15 37.16 0.34 -0.81 16 2 C 0.18 1.87 2.95 -68.86 -0.20 1.67 16 3 H 0.09 0.81 7.15 -51.93 -0.37 0.44 16 4 N -0.66 -8.50 5.53 -102.16 -0.57 -9.07 16 5 C 0.07 0.93 2.00 -68.86 -0.14 0.79 16 6 H 0.10 1.41 6.90 -51.93 -0.36 1.05 16 7 C -0.19 -1.86 8.72 37.16 0.32 -1.53 16 8 C 0.51 10.42 7.14 -10.99 -0.08 10.34 16 9 O -0.52 -12.87 16.01 5.56 0.09 -12.78 16 10 N -0.60 -12.35 2.86 -182.96 -0.52 -12.87 16 11 C 0.08 1.24 8.79 59.84 0.53 1.77 16 12 C 0.22 5.40 4.23 -5.20 -0.02 5.38 16 13 C -0.53 -15.59 9.94 -34.44 -0.34 -15.93 16 14 H 0.07 2.37 8.06 -52.49 -0.42 1.95 16 15 C 0.07 2.15 5.47 -17.82 -0.10 2.05 16 16 N -0.90 -28.34 13.96 55.43 0.77 -27.57 16 17 Si 0.88 21.92 27.47 -169.99 -4.67 17.25 16 18 H -0.27 -6.88 7.11 56.52 0.40 -6.48 16 19 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 20 H -0.27 -6.21 6.54 56.52 0.37 -5.84 16 21 C 0.19 2.71 7.03 -13.06 -0.09 2.62 16 22 N -0.48 -6.97 11.55 -9.87 -0.11 -7.09 16 23 C 0.17 2.58 6.40 -156.37 -1.00 1.58 16 24 C 0.03 0.30 0.99 -155.66 -0.15 0.15 16 25 C -0.14 -1.60 7.97 37.16 0.30 -1.30 16 26 C -0.14 -1.26 8.46 37.16 0.31 -0.95 16 27 C -0.14 -1.53 8.46 37.16 0.31 -1.22 16 28 N -0.38 -6.58 11.47 30.90 0.35 -6.22 16 29 O 0.11 1.82 11.31 18.11 0.20 2.02 16 30 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.36 3.93 8.09 -39.29 -0.32 3.61 16 34 H 0.06 0.46 7.41 -51.93 -0.38 0.07 16 35 H 0.07 0.67 8.13 -51.93 -0.42 0.25 16 36 H 0.08 0.77 4.79 -51.92 -0.25 0.53 16 37 H 0.05 0.58 7.13 -51.93 -0.37 0.21 16 38 H 0.07 1.20 8.07 -51.93 -0.42 0.79 16 39 H 0.06 0.75 5.92 -51.93 -0.31 0.44 16 40 H 0.03 0.68 7.13 -51.93 -0.37 0.31 16 41 H 0.04 0.96 6.85 -51.93 -0.36 0.60 16 42 H 0.26 7.78 8.31 -40.82 -0.34 7.44 16 43 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 45 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 46 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 47 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 48 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 49 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 50 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 51 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 410.24 15.07 6.18 6.18 Total: -1.00 -37.50 410.24 -6.87 -44.37 By element: Atomic # 1 Polarization: 9.76 SS G_CDS: -8.59 Total: 1.17 kcal Atomic # 6 Polarization: 4.62 SS G_CDS: -0.01 Total: 4.61 kcal Atomic # 7 Polarization: -62.74 SS G_CDS: -0.07 Total: -62.81 kcal Atomic # 8 Polarization: -11.06 SS G_CDS: 0.29 Total: -10.76 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -4.67 Total: 17.25 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -37.50 -6.87 -44.37 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000185189581.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.166 kcal (2) G-P(sol) polarization free energy of solvation -37.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.369 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds