Wall clock time and date at job start Tue Mar 31 2020 22:09:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09001 * 109.46644 * 2 1 4 4 N 1.46903 * 109.47000 * 119.99842 * 2 1 3 5 5 C 1.46904 * 110.99712 * 205.29349 * 4 2 1 6 6 H 1.08996 * 109.47021 * 325.65133 * 5 4 2 7 7 C 1.52998 * 109.46854 * 85.64809 * 5 4 2 8 8 C 1.50697 * 109.46992 * 205.64983 * 5 4 2 9 9 O 1.21283 * 119.99706 * 359.97438 * 8 5 4 10 10 N 1.34780 * 119.99974 * 179.97438 * 8 5 4 11 11 C 1.46494 * 119.99774 * 0.02562 * 10 8 5 12 12 C 1.46497 * 119.99660 * 179.97438 * 10 8 5 13 13 C 1.50700 * 109.46743 * 90.00813 * 12 10 8 14 14 H 1.08001 * 120.00345 * 359.97438 * 13 12 10 15 15 C 1.37881 * 119.99994 * 180.02562 * 13 12 10 16 16 N 1.31513 * 119.99918 * 179.97438 * 15 13 12 17 17 Si 1.86804 * 119.99866 * 359.97438 * 15 13 12 18 18 H 1.48503 * 109.46617 * 90.00545 * 17 15 13 19 19 H 1.48495 * 109.46985 * 210.00226 * 17 15 13 20 20 H 1.48499 * 109.47389 * 330.00798 * 17 15 13 21 21 C 1.50698 * 109.47099 * 239.99945 * 2 1 3 22 22 N 1.31124 * 126.55249 * 105.02350 * 21 2 1 23 23 C 1.34493 * 105.61540 * 179.97438 * 22 21 2 24 24 C 1.50699 * 126.28447 * 180.26493 * 23 22 21 25 25 C 1.53005 * 109.46809 * 179.70873 * 24 23 22 26 26 C 1.53005 * 109.47303 * 299.70610 * 24 23 22 27 27 C 1.52996 * 109.47482 * 59.71394 * 24 23 22 28 28 N 1.29948 * 107.42359 * 0.02562 * 23 22 21 29 29 O 1.21299 * 110.25078 * 359.97438 * 28 23 22 30 30 H 1.08996 * 109.46874 * 184.25050 * 1 2 3 31 31 H 1.09001 * 109.47049 * 304.24085 * 1 2 3 32 32 H 1.08994 * 109.47224 * 64.24592 * 1 2 3 33 33 H 1.00901 * 111.00143 * 329.24469 * 4 2 1 34 34 H 1.08994 * 109.47782 * 307.83527 * 7 5 4 35 35 H 1.09001 * 109.47238 * 67.84153 * 7 5 4 36 36 H 1.09009 * 109.46739 * 187.83292 * 7 5 4 37 37 H 1.09001 * 109.47572 * 89.99794 * 11 10 8 38 38 H 1.09004 * 109.46706 * 209.99527 * 11 10 8 39 39 H 1.08999 * 109.47464 * 329.99376 * 11 10 8 40 40 H 1.08996 * 109.46827 * 210.00061 * 12 10 8 41 41 H 1.08999 * 109.47573 * 330.00397 * 12 10 8 42 42 H 0.97004 * 119.99711 * 179.97438 * 16 15 13 43 43 H 1.09000 * 109.47261 * 60.00516 * 25 24 23 44 44 H 1.09006 * 109.47082 * 179.97438 * 25 24 23 45 45 H 1.08996 * 109.47647 * 300.00038 * 25 24 23 46 46 H 1.09003 * 109.46714 * 60.00363 * 26 24 23 47 47 H 1.08999 * 109.47040 * 180.02562 * 26 24 23 48 48 H 1.09001 * 109.47368 * 300.00492 * 26 24 23 49 49 H 1.09001 * 109.47462 * 59.99286 * 27 24 23 50 50 H 1.08999 * 109.47588 * 179.97438 * 27 24 23 51 51 H 1.09003 * 109.46802 * 299.99800 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6925 1.1995 5 6 3.3643 -0.2265 1.5643 6 1 3.9255 0.0077 0.6598 7 6 3.2510 1.0277 2.4332 8 6 4.0791 -1.3076 2.3333 9 8 3.5230 -2.3621 2.5559 10 7 5.3363 -1.1024 2.7736 11 6 6.0077 0.1716 2.5051 12 6 6.0310 -2.1532 3.5216 13 6 6.7812 -3.0406 2.5620 14 1 6.7439 -2.8420 1.5011 15 6 7.5143 -4.1067 3.0384 16 7 8.1686 -4.8814 2.2009 17 14 7.5783 -4.4507 4.8734 18 1 6.4702 -5.3673 5.2440 19 1 8.8782 -5.0828 5.2135 20 1 7.4370 -3.1756 5.6213 21 6 2.0324 -0.7104 -1.2304 22 7 2.5501 -0.1520 -2.2979 23 6 2.8519 -1.1670 -3.1272 24 6 3.4790 -1.0470 -4.4922 25 6 3.6587 -2.4417 -5.0952 26 6 2.5718 -0.2125 -5.3987 27 6 4.8431 -0.3652 -4.3688 28 7 2.5082 -2.2703 -2.5329 29 8 2.0355 -2.0300 -1.4420 30 1 -0.3633 -1.0248 0.0762 31 1 -0.3633 0.5782 0.8496 32 1 -0.3633 0.4465 -0.9255 33 1 1.3771 -0.5807 1.9693 34 1 2.6159 1.7595 1.9341 35 1 2.8140 0.7642 3.3964 36 1 4.2426 1.4530 2.5884 37 1 5.8040 0.8682 3.3184 38 1 7.0825 0.0068 2.4286 39 1 5.6363 0.5878 1.5687 40 1 6.7330 -1.6982 4.2202 41 1 5.3032 -2.7481 4.0735 42 1 8.6847 -5.6312 2.5362 43 1 2.6869 -2.9274 -5.1833 44 1 4.1119 -2.3549 -6.0828 45 1 4.3049 -3.0362 -4.4495 46 1 2.4438 0.7811 -4.9691 47 1 3.0251 -0.1261 -6.3862 48 1 1.6000 -0.6983 -5.4867 49 1 5.4893 -0.9597 -3.7230 50 1 5.2968 -0.2788 -5.3561 51 1 4.7150 0.6284 -3.9392 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000185189581.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:09:12 Heat of formation + Delta-G solvation = 7.728780 kcal Electronic energy + Delta-G solvation = -30954.644404 eV Core-core repulsion = 26891.621520 eV Total energy + Delta-G solvation = -4063.022884 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -46.60987 -40.99579 -38.73120 -38.39264 -36.61838 -35.87895 -34.85668 -33.94542 -32.17516 -30.51508 -28.89307 -28.39980 -28.29098 -27.57451 -25.59713 -25.54052 -25.47653 -23.45399 -22.78564 -20.36472 -20.10384 -19.17201 -19.10802 -18.34493 -17.83884 -17.37910 -16.94221 -16.50710 -16.37932 -16.04439 -15.71662 -15.37886 -15.24080 -14.97922 -14.72315 -14.46750 -14.33242 -13.73337 -13.67068 -13.55876 -13.51088 -13.36862 -13.29923 -13.15965 -13.06248 -12.93444 -12.75385 -12.72664 -12.57953 -12.51569 -12.49476 -12.42591 -12.32217 -12.26225 -12.00941 -11.95106 -11.81924 -11.77809 -10.98960 -10.86094 -10.58498 -9.62568 -9.35916 -8.36818 -6.42791 0.14864 1.16660 1.30083 1.35663 1.43951 1.82825 1.90711 2.15228 2.29039 2.45569 2.89518 2.97762 3.22530 3.58158 3.69227 3.82313 3.85313 3.92757 3.98213 4.02783 4.11945 4.20190 4.33719 4.55914 4.58780 4.60406 4.63350 4.65074 4.73831 4.74867 4.78300 4.81822 4.83619 4.85109 4.85555 4.86733 4.91716 4.95379 4.98458 5.15436 5.18976 5.23447 5.25763 5.28141 5.43781 5.57794 5.71347 6.21478 6.29593 6.58447 6.73128 7.17399 7.18826 7.47572 8.80858 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.010705 B = 0.003509 C = 0.002959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2615.015412 B = 7977.272327 C = 9460.892519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.183 3.817 3 H 0.123 0.877 4 N -0.680 5.680 5 C 0.081 3.919 6 H 0.091 0.909 7 C -0.177 4.177 8 C 0.498 3.502 9 O -0.576 6.576 10 N -0.609 5.609 11 C 0.075 3.925 12 C 0.226 3.774 13 C -0.539 4.539 14 H 0.017 0.983 15 C 0.007 3.993 16 N -0.949 5.949 17 Si 0.954 3.046 18 H -0.277 1.277 19 H -0.274 1.274 20 H -0.233 1.233 21 C 0.191 3.809 22 N -0.487 5.487 23 C 0.172 3.828 24 C 0.018 3.982 25 C -0.137 4.137 26 C -0.126 4.126 27 C -0.134 4.134 28 N -0.417 5.417 29 O 0.068 5.932 30 H 0.062 0.938 31 H 0.111 0.889 32 H 0.081 0.919 33 H 0.376 0.624 34 H 0.099 0.901 35 H 0.067 0.933 36 H 0.091 0.909 37 H 0.091 0.909 38 H 0.061 0.939 39 H 0.081 0.919 40 H 0.054 0.946 41 H 0.019 0.981 42 H 0.268 0.732 43 H 0.054 0.946 44 H 0.098 0.902 45 H 0.036 0.964 46 H 0.066 0.934 47 H 0.096 0.904 48 H 0.051 0.949 49 H 0.032 0.968 50 H 0.098 0.902 51 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.478 20.883 -8.226 26.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.071 3.929 3 H 0.140 0.860 4 N -0.317 5.317 5 C -0.032 4.032 6 H 0.108 0.892 7 C -0.236 4.236 8 C 0.286 3.714 9 O -0.455 6.455 10 N -0.342 5.342 11 C -0.066 4.066 12 C 0.104 3.896 13 C -0.578 4.578 14 H 0.036 0.964 15 C -0.190 4.190 16 N -0.589 5.589 17 Si 0.776 3.224 18 H -0.202 1.202 19 H -0.199 1.199 20 H -0.155 1.155 21 C -0.030 4.030 22 N -0.222 5.222 23 C -0.101 4.101 24 C 0.016 3.984 25 C -0.195 4.195 26 C -0.184 4.184 27 C -0.192 4.192 28 N -0.127 5.127 29 O 0.014 5.986 30 H 0.082 0.918 31 H 0.130 0.870 32 H 0.100 0.900 33 H 0.201 0.799 34 H 0.118 0.882 35 H 0.086 0.914 36 H 0.110 0.890 37 H 0.110 0.890 38 H 0.080 0.920 39 H 0.100 0.900 40 H 0.071 0.929 41 H 0.037 0.963 42 H 0.077 0.923 43 H 0.073 0.927 44 H 0.117 0.883 45 H 0.055 0.945 46 H 0.085 0.915 47 H 0.115 0.885 48 H 0.070 0.930 49 H 0.051 0.949 50 H 0.117 0.883 51 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -14.199 19.188 -9.032 25.522 hybrid contribution 0.426 -0.628 0.948 1.214 sum -13.773 18.560 -8.085 24.485 Atomic orbital electron populations 1.22022 0.88843 1.04271 1.05431 1.20237 0.97588 0.94137 0.80976 0.85987 1.59539 1.03091 1.61004 1.08115 1.21413 0.90591 0.92642 0.98556 0.89157 1.22625 1.05789 0.95164 1.00007 1.21289 0.81673 0.88869 0.79608 1.90639 1.67515 1.29169 1.58157 1.47922 1.14027 1.16966 1.55263 1.22125 0.98273 0.84005 1.02239 1.19291 0.91679 0.86999 0.91651 1.21585 1.29653 1.13000 0.93519 0.96424 1.25956 0.94207 0.94892 1.03977 1.70078 1.33124 1.18264 1.37414 0.85629 0.77830 0.80262 0.78669 1.20242 1.19885 1.15543 1.29728 0.94391 0.80752 0.98151 1.71757 1.17653 1.30677 1.02067 1.26422 0.99661 0.83394 1.00671 1.19264 0.96115 0.98581 0.84395 1.21831 1.02074 0.93808 1.01797 1.21795 0.98151 0.99104 0.99387 1.21848 0.93407 1.00252 1.03703 1.74683 1.17251 1.25520 0.95281 1.85332 1.58251 1.28213 1.26805 0.91839 0.87006 0.90040 0.79931 0.88198 0.91381 0.89049 0.89033 0.92012 0.90048 0.92859 0.96316 0.92272 0.92685 0.88294 0.94501 0.91522 0.88545 0.92993 0.94892 0.88279 0.91441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.84 9.15 71.99 0.66 -1.18 16 2 C 0.18 3.47 2.95 44.17 0.13 3.61 16 3 H 0.12 1.64 7.15 -2.39 -0.02 1.63 16 4 N -0.68 -16.93 5.53 -477.14 -2.64 -19.57 16 5 C 0.08 2.18 2.00 44.17 0.09 2.27 16 6 H 0.09 2.54 6.90 -2.39 -0.02 2.52 16 7 C -0.18 -2.78 8.72 71.98 0.63 -2.16 16 8 C 0.50 20.49 7.14 87.66 0.63 21.12 16 9 O -0.58 -30.02 16.01 -3.04 -0.05 -30.07 16 10 N -0.61 -25.05 2.86 -851.15 -2.43 -27.48 16 11 C 0.08 2.14 8.79 127.77 1.12 3.26 16 12 C 0.23 11.31 4.23 85.63 0.36 11.67 16 13 C -0.54 -33.24 9.94 25.60 0.25 -32.98 16 14 H 0.02 1.23 8.06 -2.91 -0.02 1.21 16 15 C 0.01 0.44 5.47 84.66 0.46 0.91 16 16 N -0.95 -62.46 13.96 21.45 0.30 -62.17 16 17 Si 0.95 45.67 27.47 68.60 1.88 47.55 16 18 H -0.28 -13.36 7.11 99.48 0.71 -12.65 16 19 H -0.27 -12.50 7.11 99.48 0.71 -11.80 16 20 H -0.23 -9.80 6.54 99.48 0.65 -9.15 16 21 C 0.19 5.47 7.03 88.38 0.62 6.09 16 22 N -0.49 -13.96 11.55 -303.21 -3.50 -17.46 16 23 C 0.17 5.32 6.40 138.46 0.89 6.20 16 24 C 0.02 0.43 0.99 -52.93 -0.05 0.37 16 25 C -0.14 -3.16 7.97 71.98 0.57 -2.58 16 26 C -0.13 -2.13 8.46 71.98 0.61 -1.52 16 27 C -0.13 -2.88 8.46 71.98 0.61 -2.27 16 28 N -0.42 -15.43 11.47 -60.33 -0.69 -16.12 16 29 O 0.07 2.50 11.31 74.85 0.85 3.35 16 30 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.11 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.38 7.49 8.09 -89.69 -0.73 6.76 16 34 H 0.10 0.88 7.41 -2.39 -0.02 0.87 16 35 H 0.07 1.11 8.13 -2.39 -0.02 1.09 16 36 H 0.09 1.28 4.79 -2.38 -0.01 1.27 16 37 H 0.09 1.83 7.13 -2.39 -0.02 1.82 16 38 H 0.06 1.92 8.07 -2.38 -0.02 1.90 16 39 H 0.08 1.91 5.92 -2.39 -0.01 1.90 16 40 H 0.05 2.40 7.13 -2.39 -0.02 2.38 16 41 H 0.02 1.00 6.85 -2.39 -0.02 0.99 16 42 H 0.27 16.35 8.31 -92.71 -0.77 15.58 16 43 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 44 H 0.10 1.60 8.14 -2.38 -0.02 1.58 16 45 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 46 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 47 H 0.10 1.09 8.14 -2.39 -0.02 1.08 16 48 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 49 H 0.03 0.87 8.14 -2.39 -0.02 0.85 16 50 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 51 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 Total: -1.00 -91.08 410.24 1.44 -89.64 By element: Atomic # 1 Polarization: 19.39 SS G_CDS: 0.15 Total: 19.53 kcal Atomic # 6 Polarization: 5.21 SS G_CDS: 7.58 Total: 12.79 kcal Atomic # 7 Polarization: -133.83 SS G_CDS: -8.97 Total: -142.80 kcal Atomic # 8 Polarization: -27.52 SS G_CDS: 0.80 Total: -26.73 kcal Atomic # 14 Polarization: 45.67 SS G_CDS: 1.88 Total: 47.55 kcal Total: -91.08 1.44 -89.64 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000185189581.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.372 kcal (2) G-P(sol) polarization free energy of solvation -91.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.643 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds