Wall clock time and date at job start Tue Mar 31 2020 22:09:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 H 1.08996 * 109.46757 * 2 1 4 4 N 1.46892 * 109.46958 * 120.00661 * 2 1 3 5 5 C 1.46900 * 111.00061 * 274.99675 * 4 2 1 6 6 H 1.08995 * 109.46818 * 35.00251 * 5 4 2 7 7 C 1.53006 * 109.47173 * 275.00538 * 5 4 2 8 8 C 1.50703 * 109.47129 * 155.00455 * 5 4 2 9 9 N 1.31129 * 126.54811 * 224.70869 * 8 5 4 10 10 C 1.34497 * 105.61138 * 179.91527 * 9 8 5 11 11 C 1.50703 * 126.28492 * 180.12812 * 10 9 8 12 12 C 1.52998 * 109.46668 * 180.24412 * 11 10 9 13 13 C 1.52997 * 109.47023 * 300.24068 * 11 10 9 14 14 C 1.52993 * 109.47015 * 60.24225 * 11 10 9 15 15 N 1.29948 * 107.42532 * 0.35551 * 10 9 8 16 16 O 1.21298 * 110.24762 * 359.77469 * 15 10 9 17 17 C 1.50699 * 109.46709 * 240.00546 * 2 1 3 18 18 O 1.21280 * 120.00112 * 245.93792 * 17 2 1 19 19 N 1.34781 * 119.99776 * 65.93744 * 17 2 1 20 20 C 1.46495 * 120.00203 * 4.61277 * 19 17 2 21 21 C 1.46505 * 119.99911 * 184.61016 * 19 17 2 22 22 C 1.50700 * 109.47131 * 90.00059 * 21 19 17 23 23 H 1.08010 * 119.99875 * 0.02562 * 22 21 19 24 24 C 1.37872 * 120.00256 * 180.02562 * 22 21 19 25 25 N 1.31516 * 119.99783 * 359.97438 * 24 22 21 26 26 Si 1.86802 * 120.00117 * 179.97438 * 24 22 21 27 27 H 1.48496 * 109.47295 * 359.97438 * 26 24 22 28 28 H 1.48505 * 109.46854 * 119.99488 * 26 24 22 29 29 H 1.48496 * 109.47001 * 239.99530 * 26 24 22 30 30 H 1.09006 * 109.46705 * 309.16621 * 1 2 3 31 31 H 1.08994 * 109.47041 * 69.16173 * 1 2 3 32 32 H 1.08998 * 109.47076 * 189.16753 * 1 2 3 33 33 H 1.00904 * 111.00021 * 151.04469 * 4 2 1 34 34 H 1.09004 * 109.46713 * 300.00110 * 7 5 4 35 35 H 1.09002 * 109.46998 * 59.99684 * 7 5 4 36 36 H 1.08999 * 109.47059 * 180.02562 * 7 5 4 37 37 H 1.09001 * 109.47513 * 60.00099 * 12 11 10 38 38 H 1.09003 * 109.46770 * 180.02562 * 12 11 10 39 39 H 1.08997 * 109.47418 * 299.99818 * 12 11 10 40 40 H 1.09003 * 109.47230 * 60.00629 * 13 11 10 41 41 H 1.08997 * 109.46993 * 180.02562 * 13 11 10 42 42 H 1.09001 * 109.47338 * 300.00011 * 13 11 10 43 43 H 1.09004 * 109.46991 * 59.99806 * 14 11 10 44 44 H 1.09003 * 109.47291 * 179.97438 * 14 11 10 45 45 H 1.08993 * 109.47489 * 299.99722 * 14 11 10 46 46 H 1.08998 * 109.47158 * 95.84810 * 20 19 17 47 47 H 1.09000 * 109.47264 * 215.84250 * 20 19 17 48 48 H 1.09000 * 109.47361 * 335.84314 * 20 19 17 49 49 H 1.08990 * 109.47352 * 210.00048 * 21 19 17 50 50 H 1.08998 * 109.47070 * 330.00415 * 21 19 17 51 51 H 0.97004 * 119.99795 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0197 -0.6926 1.1993 5 6 2.0826 0.2224 2.3468 6 1 1.2578 0.9327 2.2907 7 6 3.4112 0.9807 2.3223 8 6 1.9788 -0.5680 3.6258 9 7 1.2397 -0.2733 4.6681 10 6 1.4644 -1.2544 5.5602 11 6 0.8437 -1.3754 6.9281 12 6 1.3735 -2.6335 7.6190 13 6 1.2048 -0.1449 7.7626 14 6 -0.6772 -1.4706 6.7914 15 7 2.3187 -2.0763 5.0278 16 8 2.6268 -1.7000 3.9166 17 6 2.0323 -0.7103 -1.2305 18 8 2.6382 -1.7554 -1.1227 19 7 1.8082 -0.1841 -2.4510 20 6 1.1662 1.1266 -2.5769 21 6 2.2067 -0.9230 -3.6517 22 6 1.0691 -1.8040 -4.1000 23 1 0.1419 -1.8123 -3.5461 24 6 1.2120 -2.5993 -5.2171 25 7 2.3409 -2.5888 -5.8917 26 14 -0.1978 -3.6919 -5.7723 27 1 -1.3487 -3.5221 -4.8495 28 1 -0.6060 -3.3119 -7.1487 29 1 0.2409 -5.1105 -5.7599 30 1 -0.3633 0.6491 0.7968 31 1 -0.3633 0.3656 -0.9604 32 1 -0.3633 -1.0145 0.1637 33 1 2.9174 -1.1206 1.0286 34 1 4.2361 0.2703 2.3784 35 1 3.4863 1.5523 1.3973 36 1 3.4581 1.6593 3.1741 37 1 2.4570 -2.5656 7.7164 38 1 0.9242 -2.7212 8.6083 39 1 1.1163 -3.5101 7.0246 40 1 0.8273 0.7515 7.2703 41 1 0.7562 -0.2325 8.7521 42 1 2.2883 -0.0770 7.8599 43 1 -0.9343 -2.3472 6.1969 44 1 -1.1261 -1.5585 7.7808 45 1 -1.0546 -0.5743 6.2992 46 1 1.9301 1.8964 -2.6861 47 1 0.5181 1.1311 -3.4533 48 1 0.5726 1.3277 -1.6851 49 1 2.4556 -0.2190 -4.4456 50 1 3.0769 -1.5396 -3.4268 51 1 2.4413 -3.1481 -6.6779 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000185189612.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:09:22 Heat of formation + Delta-G solvation = 31.949333 kcal Electronic energy + Delta-G solvation = -30094.401146 eV Core-core repulsion = 26032.428544 eV Total energy + Delta-G solvation = -4061.972602 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 4.75 seconds Orbital eigenvalues (eV) -45.61888 -39.63993 -37.93626 -37.21712 -34.99789 -34.89023 -33.17275 -32.41401 -31.02356 -28.60937 -27.69299 -27.64609 -27.54932 -26.11011 -24.98186 -24.62333 -23.72525 -22.27658 -21.42760 -19.55887 -18.76669 -18.09179 -17.45817 -16.64901 -16.51840 -16.35634 -15.50638 -15.15547 -14.96805 -14.62270 -14.53272 -14.44296 -14.23751 -14.05949 -13.53649 -13.01718 -12.81790 -12.71899 -12.65750 -12.62966 -12.53719 -12.27918 -12.08026 -12.04397 -12.03107 -11.81827 -11.77587 -11.69983 -11.45117 -11.41440 -11.28944 -11.16374 -11.13767 -10.93568 -10.83610 -10.60306 -10.17830 -9.99613 -9.63270 -8.95336 -8.71542 -8.45833 -7.70370 -6.06697 -4.11488 1.11032 2.13690 2.74690 3.20123 3.28317 3.29038 3.37267 3.41643 3.65249 3.90790 4.18918 4.42841 4.42997 4.53374 4.59917 4.66485 4.80692 4.88483 4.98218 5.10442 5.24767 5.25098 5.27798 5.28135 5.30384 5.35523 5.41401 5.45527 5.50232 5.50663 5.52659 5.65426 5.73380 5.78132 5.79165 5.80829 5.88066 5.90624 5.95794 5.98303 6.13941 6.39988 6.64168 7.02357 7.19450 7.40508 7.48272 7.89617 8.13788 8.20005 8.33386 8.85050 9.00474 9.53868 11.01442 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.018161 B = 0.002295 C = 0.002194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1541.403211 B =12196.091995 C =12759.053277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.070 3.930 3 H 0.069 0.931 4 N -0.666 5.666 5 C 0.177 3.823 6 H 0.124 0.876 7 C -0.185 4.185 8 C 0.207 3.793 9 N -0.481 5.481 10 C 0.176 3.824 11 C 0.025 3.975 12 C -0.140 4.140 13 C -0.137 4.137 14 C -0.138 4.138 15 N -0.383 5.383 16 O 0.087 5.913 17 C 0.504 3.496 18 O -0.531 6.531 19 N -0.598 5.598 20 C 0.068 3.932 21 C 0.245 3.755 22 C -0.526 4.526 23 H 0.058 0.942 24 C 0.061 3.939 25 N -0.894 5.894 26 Si 0.898 3.102 27 H -0.273 1.273 28 H -0.284 1.284 29 H -0.283 1.283 30 H 0.059 0.941 31 H 0.077 0.923 32 H 0.071 0.929 33 H 0.366 0.634 34 H 0.070 0.930 35 H 0.079 0.921 36 H 0.071 0.929 37 H 0.061 0.939 38 H 0.068 0.932 39 H 0.062 0.938 40 H 0.067 0.933 41 H 0.068 0.932 42 H 0.055 0.945 43 H 0.057 0.943 44 H 0.068 0.932 45 H 0.067 0.933 46 H 0.045 0.955 47 H 0.073 0.927 48 H 0.071 0.929 49 H 0.033 0.967 50 H 0.045 0.955 51 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.612 11.006 23.850 26.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.043 4.043 3 H 0.087 0.913 4 N -0.302 5.302 5 C 0.064 3.936 6 H 0.142 0.858 7 C -0.244 4.244 8 C -0.015 4.015 9 N -0.215 5.215 10 C -0.097 4.097 11 C 0.023 3.977 12 C -0.197 4.197 13 C -0.195 4.195 14 C -0.196 4.196 15 N -0.090 5.090 16 O 0.029 5.971 17 C 0.289 3.711 18 O -0.408 6.408 19 N -0.330 5.330 20 C -0.076 4.076 21 C 0.126 3.874 22 C -0.565 4.565 23 H 0.076 0.924 24 C -0.141 4.141 25 N -0.533 5.533 26 Si 0.726 3.274 27 H -0.198 1.198 28 H -0.210 1.210 29 H -0.209 1.209 30 H 0.078 0.922 31 H 0.096 0.904 32 H 0.090 0.910 33 H 0.190 0.810 34 H 0.089 0.911 35 H 0.098 0.902 36 H 0.090 0.910 37 H 0.080 0.920 38 H 0.087 0.913 39 H 0.081 0.919 40 H 0.086 0.914 41 H 0.087 0.913 42 H 0.074 0.926 43 H 0.076 0.924 44 H 0.087 0.913 45 H 0.086 0.914 46 H 0.064 0.936 47 H 0.092 0.908 48 H 0.089 0.911 49 H 0.051 0.949 50 H 0.063 0.937 51 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -2.779 9.613 24.505 26.469 hybrid contribution 0.015 -0.077 -0.930 0.934 sum -2.764 9.535 23.574 25.580 Atomic orbital electron populations 1.21981 0.92308 1.03770 1.02374 1.21483 0.97597 0.96415 0.88824 0.91298 1.60236 1.36388 1.30692 1.02905 1.19989 1.00284 0.90464 0.82847 0.85834 1.22572 0.96508 1.01487 1.03878 1.28626 0.89214 0.86309 0.97340 1.71768 1.22744 1.26006 1.00970 1.25694 0.96216 0.88449 0.99386 1.18962 0.95566 0.97744 0.85402 1.21834 1.01579 0.96027 1.00305 1.21846 1.01731 0.96540 0.99358 1.21854 0.92281 1.02976 1.02493 1.74641 1.17532 1.22343 0.94460 1.85315 1.52581 1.34306 1.24902 1.20140 0.80662 0.85821 0.84433 1.90683 1.41340 1.22989 1.85812 1.48081 1.58646 1.19030 1.07209 1.21970 0.97638 0.84891 1.03114 1.19315 0.96815 0.91407 0.79904 1.21455 0.99980 1.24227 1.10828 0.92352 1.24939 0.96018 0.96790 0.96389 1.69942 1.24661 1.40085 1.18640 0.86442 0.82210 0.80510 0.78270 1.19763 1.20973 1.20859 0.92214 0.90425 0.90965 0.80965 0.91060 0.90219 0.91012 0.92023 0.91343 0.91897 0.91406 0.91276 0.92572 0.92378 0.91287 0.91379 0.93639 0.90804 0.91077 0.94943 0.93696 0.92750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.85 8.83 37.16 0.33 -1.52 16 2 C 0.07 0.95 2.00 -68.86 -0.14 0.81 16 3 H 0.07 0.74 6.69 -51.93 -0.35 0.39 16 4 N -0.67 -8.94 5.88 -102.17 -0.60 -9.54 16 5 C 0.18 1.84 2.94 -68.86 -0.20 1.63 16 6 H 0.12 1.12 7.21 -51.93 -0.37 0.74 16 7 C -0.18 -1.53 9.13 37.16 0.34 -1.19 16 8 C 0.21 2.59 7.35 -13.06 -0.10 2.49 16 9 N -0.48 -6.12 11.55 -9.87 -0.11 -6.24 16 10 C 0.18 2.21 6.40 -156.37 -1.00 1.21 16 11 C 0.03 0.23 0.99 -155.66 -0.15 0.08 16 12 C -0.14 -1.18 7.97 37.16 0.30 -0.88 16 13 C -0.14 -1.04 8.46 37.16 0.31 -0.73 16 14 C -0.14 -1.15 8.46 37.15 0.31 -0.84 16 15 N -0.38 -5.44 11.47 30.90 0.35 -5.09 16 16 O 0.09 1.24 11.31 18.12 0.20 1.44 16 17 C 0.50 9.82 6.98 -10.98 -0.08 9.75 16 18 O -0.53 -12.75 15.28 5.56 0.08 -12.66 16 19 N -0.60 -11.97 2.86 -182.96 -0.52 -12.49 16 20 C 0.07 0.98 9.74 59.84 0.58 1.56 16 21 C 0.24 6.23 5.22 -5.19 -0.03 6.21 16 22 C -0.53 -14.66 9.39 -34.44 -0.32 -14.98 16 23 H 0.06 1.63 7.81 -52.48 -0.41 1.22 16 24 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 25 N -0.89 -26.37 13.29 55.43 0.74 -25.63 16 26 Si 0.90 21.77 29.54 -169.99 -5.02 16.75 16 27 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 28 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 29 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 30 H 0.06 0.59 7.57 -51.93 -0.39 0.20 16 31 H 0.08 0.97 5.41 -51.93 -0.28 0.69 16 32 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 33 H 0.37 5.40 7.28 -39.29 -0.29 5.12 16 34 H 0.07 0.62 8.13 -51.93 -0.42 0.20 16 35 H 0.08 0.59 7.43 -51.93 -0.39 0.21 16 36 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 40 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 42 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 44 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 45 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 46 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 47 H 0.07 1.12 8.11 -51.93 -0.42 0.70 16 48 H 0.07 0.81 4.11 -51.93 -0.21 0.60 16 49 H 0.03 0.84 8.07 -51.93 -0.42 0.42 16 50 H 0.04 1.30 7.36 -51.93 -0.38 0.92 16 51 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 413.03 15.07 6.22 6.22 Total: -1.00 -33.81 413.03 -7.14 -40.95 By element: Atomic # 1 Polarization: 9.59 SS G_CDS: -8.54 Total: 1.05 kcal Atomic # 6 Polarization: 5.16 SS G_CDS: 0.06 Total: 5.22 kcal Atomic # 7 Polarization: -58.83 SS G_CDS: -0.15 Total: -58.98 kcal Atomic # 8 Polarization: -11.51 SS G_CDS: 0.29 Total: -11.22 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -33.81 -7.14 -40.95 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000185189612.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.904 kcal (2) G-P(sol) polarization free energy of solvation -33.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.955 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.76 seconds