Wall clock time and date at job start Tue Mar 31 2020 22:09:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 H 1.08996 * 109.46757 * 2 1 4 4 N 1.46892 * 109.46958 * 120.00661 * 2 1 3 5 5 C 1.46900 * 111.00061 * 274.99675 * 4 2 1 6 6 H 1.08995 * 109.46818 * 35.00251 * 5 4 2 7 7 C 1.53006 * 109.47173 * 275.00538 * 5 4 2 8 8 C 1.50703 * 109.47129 * 155.00455 * 5 4 2 9 9 N 1.31129 * 126.54811 * 224.70869 * 8 5 4 10 10 C 1.34497 * 105.61138 * 179.91527 * 9 8 5 11 11 C 1.50703 * 126.28492 * 180.12812 * 10 9 8 12 12 C 1.52998 * 109.46668 * 180.24412 * 11 10 9 13 13 C 1.52997 * 109.47023 * 300.24068 * 11 10 9 14 14 C 1.52993 * 109.47015 * 60.24225 * 11 10 9 15 15 N 1.29948 * 107.42532 * 0.35551 * 10 9 8 16 16 O 1.21298 * 110.24762 * 359.77469 * 15 10 9 17 17 C 1.50699 * 109.46709 * 240.00546 * 2 1 3 18 18 O 1.21280 * 120.00112 * 245.93792 * 17 2 1 19 19 N 1.34781 * 119.99776 * 65.93744 * 17 2 1 20 20 C 1.46495 * 120.00203 * 4.61277 * 19 17 2 21 21 C 1.46505 * 119.99911 * 184.61016 * 19 17 2 22 22 C 1.50700 * 109.47131 * 90.00059 * 21 19 17 23 23 H 1.08010 * 119.99875 * 0.02562 * 22 21 19 24 24 C 1.37872 * 120.00256 * 180.02562 * 22 21 19 25 25 N 1.31516 * 119.99783 * 359.97438 * 24 22 21 26 26 Si 1.86802 * 120.00117 * 179.97438 * 24 22 21 27 27 H 1.48496 * 109.47295 * 359.97438 * 26 24 22 28 28 H 1.48505 * 109.46854 * 119.99488 * 26 24 22 29 29 H 1.48496 * 109.47001 * 239.99530 * 26 24 22 30 30 H 1.09006 * 109.46705 * 309.16621 * 1 2 3 31 31 H 1.08994 * 109.47041 * 69.16173 * 1 2 3 32 32 H 1.08998 * 109.47076 * 189.16753 * 1 2 3 33 33 H 1.00904 * 111.00021 * 151.04469 * 4 2 1 34 34 H 1.09004 * 109.46713 * 300.00110 * 7 5 4 35 35 H 1.09002 * 109.46998 * 59.99684 * 7 5 4 36 36 H 1.08999 * 109.47059 * 180.02562 * 7 5 4 37 37 H 1.09001 * 109.47513 * 60.00099 * 12 11 10 38 38 H 1.09003 * 109.46770 * 180.02562 * 12 11 10 39 39 H 1.08997 * 109.47418 * 299.99818 * 12 11 10 40 40 H 1.09003 * 109.47230 * 60.00629 * 13 11 10 41 41 H 1.08997 * 109.46993 * 180.02562 * 13 11 10 42 42 H 1.09001 * 109.47338 * 300.00011 * 13 11 10 43 43 H 1.09004 * 109.46991 * 59.99806 * 14 11 10 44 44 H 1.09003 * 109.47291 * 179.97438 * 14 11 10 45 45 H 1.08993 * 109.47489 * 299.99722 * 14 11 10 46 46 H 1.08998 * 109.47158 * 95.84810 * 20 19 17 47 47 H 1.09000 * 109.47264 * 215.84250 * 20 19 17 48 48 H 1.09000 * 109.47361 * 335.84314 * 20 19 17 49 49 H 1.08990 * 109.47352 * 210.00048 * 21 19 17 50 50 H 1.08998 * 109.47070 * 330.00415 * 21 19 17 51 51 H 0.97004 * 119.99795 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0197 -0.6926 1.1993 5 6 2.0826 0.2224 2.3468 6 1 1.2578 0.9327 2.2907 7 6 3.4112 0.9807 2.3223 8 6 1.9788 -0.5680 3.6258 9 7 1.2397 -0.2733 4.6681 10 6 1.4644 -1.2544 5.5602 11 6 0.8437 -1.3754 6.9281 12 6 1.3735 -2.6335 7.6190 13 6 1.2048 -0.1449 7.7626 14 6 -0.6772 -1.4706 6.7914 15 7 2.3187 -2.0763 5.0278 16 8 2.6268 -1.7000 3.9166 17 6 2.0323 -0.7103 -1.2305 18 8 2.6382 -1.7554 -1.1227 19 7 1.8082 -0.1841 -2.4510 20 6 1.1662 1.1266 -2.5769 21 6 2.2067 -0.9230 -3.6517 22 6 1.0691 -1.8040 -4.1000 23 1 0.1419 -1.8123 -3.5461 24 6 1.2120 -2.5993 -5.2171 25 7 2.3409 -2.5888 -5.8917 26 14 -0.1978 -3.6919 -5.7723 27 1 -1.3487 -3.5221 -4.8495 28 1 -0.6060 -3.3119 -7.1487 29 1 0.2409 -5.1105 -5.7599 30 1 -0.3633 0.6491 0.7968 31 1 -0.3633 0.3656 -0.9604 32 1 -0.3633 -1.0145 0.1637 33 1 2.9174 -1.1206 1.0286 34 1 4.2361 0.2703 2.3784 35 1 3.4863 1.5523 1.3973 36 1 3.4581 1.6593 3.1741 37 1 2.4570 -2.5656 7.7164 38 1 0.9242 -2.7212 8.6083 39 1 1.1163 -3.5101 7.0246 40 1 0.8273 0.7515 7.2703 41 1 0.7562 -0.2325 8.7521 42 1 2.2883 -0.0770 7.8599 43 1 -0.9343 -2.3472 6.1969 44 1 -1.1261 -1.5585 7.7808 45 1 -1.0546 -0.5743 6.2992 46 1 1.9301 1.8964 -2.6861 47 1 0.5181 1.1311 -3.4533 48 1 0.5726 1.3277 -1.6851 49 1 2.4556 -0.2190 -4.4456 50 1 3.0769 -1.5396 -3.4268 51 1 2.4413 -3.1481 -6.6779 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000185189612.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:09:21 Heat of formation + Delta-G solvation = 6.860248 kcal Electronic energy + Delta-G solvation = -30095.489091 eV Core-core repulsion = 26032.428544 eV Total energy + Delta-G solvation = -4063.060546 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.94 seconds Orbital eigenvalues (eV) -46.60070 -41.06573 -38.70798 -38.31992 -36.62693 -35.87842 -34.85655 -33.83626 -32.04332 -29.94804 -29.01666 -28.34748 -28.25846 -27.48675 -26.03656 -25.54404 -25.32112 -23.55233 -22.49715 -20.40976 -20.12945 -19.09670 -18.66941 -18.52693 -17.81353 -17.66345 -16.71937 -16.40250 -16.22750 -15.86752 -15.77232 -15.46399 -15.19481 -14.93854 -14.55357 -14.37347 -14.07945 -13.85875 -13.59488 -13.53225 -13.47012 -13.37634 -13.19529 -13.16789 -13.06147 -12.90224 -12.80068 -12.70393 -12.60070 -12.58996 -12.48331 -12.38664 -12.25718 -12.20613 -12.09152 -11.92734 -11.76838 -11.64531 -10.97287 -10.64820 -10.51748 -9.70722 -9.39142 -8.22546 -6.36719 0.13473 1.19302 1.35752 1.38671 1.49832 1.77756 1.83832 2.18470 2.37392 2.51872 2.88890 3.07424 3.21740 3.59794 3.66541 3.84354 3.86846 3.95543 4.04432 4.10291 4.20352 4.21294 4.40558 4.53351 4.60406 4.64976 4.67434 4.73389 4.75062 4.78008 4.79976 4.85219 4.86562 4.89160 4.90329 5.00150 5.02217 5.02860 5.12524 5.20015 5.25165 5.28300 5.31580 5.37611 5.55836 5.71590 5.86113 6.06285 6.08192 6.70881 6.79553 7.15964 7.28226 7.45977 8.84529 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.018161 B = 0.002295 C = 0.002194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1541.403211 B =12196.091995 C =12759.053277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.086 3.914 3 H 0.113 0.887 4 N -0.683 5.683 5 C 0.181 3.819 6 H 0.148 0.852 7 C -0.179 4.179 8 C 0.206 3.794 9 N -0.487 5.487 10 C 0.176 3.824 11 C 0.019 3.981 12 C -0.136 4.136 13 C -0.131 4.131 14 C -0.133 4.133 15 N -0.409 5.409 16 O 0.063 5.937 17 C 0.494 3.506 18 O -0.589 6.589 19 N -0.604 5.604 20 C 0.062 3.938 21 C 0.258 3.742 22 C -0.539 4.539 23 H 0.054 0.946 24 C 0.007 3.993 25 N -0.928 5.928 26 Si 0.965 3.035 27 H -0.267 1.267 28 H -0.269 1.269 29 H -0.284 1.284 30 H 0.098 0.902 31 H 0.081 0.919 32 H 0.042 0.958 33 H 0.356 0.644 34 H 0.060 0.940 35 H 0.095 0.905 36 H 0.086 0.914 37 H 0.051 0.949 38 H 0.096 0.904 39 H 0.046 0.954 40 H 0.063 0.937 41 H 0.095 0.905 42 H 0.049 0.951 43 H 0.042 0.958 44 H 0.096 0.904 45 H 0.062 0.938 46 H 0.071 0.929 47 H 0.065 0.935 48 H 0.110 0.890 49 H 0.025 0.975 50 H -0.002 1.002 51 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.706 13.272 25.645 29.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.026 4.026 3 H 0.131 0.869 4 N -0.319 5.319 5 C 0.069 3.931 6 H 0.165 0.835 7 C -0.239 4.239 8 C -0.015 4.015 9 N -0.221 5.221 10 C -0.098 4.098 11 C 0.017 3.983 12 C -0.194 4.194 13 C -0.189 4.189 14 C -0.191 4.191 15 N -0.120 5.120 16 O 0.009 5.991 17 C 0.282 3.718 18 O -0.470 6.470 19 N -0.335 5.335 20 C -0.080 4.080 21 C 0.137 3.863 22 C -0.577 4.577 23 H 0.072 0.928 24 C -0.192 4.192 25 N -0.568 5.568 26 Si 0.790 3.210 27 H -0.191 1.191 28 H -0.194 1.194 29 H -0.211 1.211 30 H 0.116 0.884 31 H 0.100 0.900 32 H 0.061 0.939 33 H 0.179 0.821 34 H 0.079 0.921 35 H 0.114 0.886 36 H 0.105 0.895 37 H 0.071 0.929 38 H 0.114 0.886 39 H 0.065 0.935 40 H 0.082 0.918 41 H 0.114 0.886 42 H 0.068 0.932 43 H 0.062 0.938 44 H 0.115 0.885 45 H 0.081 0.919 46 H 0.090 0.910 47 H 0.083 0.917 48 H 0.128 0.872 49 H 0.043 0.957 50 H 0.016 0.984 51 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -4.894 11.944 26.291 29.289 hybrid contribution 0.691 -0.762 -1.447 1.775 sum -4.203 11.182 24.844 27.566 Atomic orbital electron populations 1.22007 0.91119 1.02990 1.04034 1.21448 0.98113 0.97399 0.85655 0.86912 1.60198 1.36039 1.32068 1.03634 1.20214 1.02365 0.89823 0.80664 0.83460 1.22544 0.94745 1.01271 1.05323 1.29169 0.88525 0.85811 0.98034 1.71786 1.22919 1.26230 1.01143 1.26413 0.95276 0.87695 1.00373 1.19260 0.96044 0.98950 0.84077 1.21819 1.01185 0.94974 1.01375 1.21821 1.01525 0.95272 1.00246 1.21839 0.91515 1.01974 1.03820 1.74644 1.19002 1.23530 0.94845 1.85283 1.53391 1.35211 1.25229 1.21238 0.79414 0.85376 0.85771 1.90651 1.43759 1.25773 1.86785 1.48069 1.58940 1.20608 1.05924 1.22295 0.98518 0.82475 1.04708 1.18753 0.94658 0.90986 0.81915 1.21731 1.00288 1.24833 1.10897 0.92779 1.25840 0.98611 0.98202 0.96579 1.70055 1.26587 1.41005 1.19170 0.85403 0.79055 0.78120 0.78453 1.19076 1.19360 1.21054 0.88368 0.90010 0.93851 0.82124 0.92138 0.88641 0.89541 0.92938 0.88552 0.93512 0.91836 0.88649 0.93183 0.93841 0.88526 0.91909 0.91002 0.91653 0.87237 0.95718 0.98362 0.92468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.22 8.83 71.99 0.64 -2.58 16 2 C 0.09 2.16 2.00 44.17 0.09 2.25 16 3 H 0.11 1.88 6.69 -2.39 -0.02 1.86 16 4 N -0.68 -17.72 5.88 -477.15 -2.81 -20.53 16 5 C 0.18 3.38 2.94 44.17 0.13 3.51 16 6 H 0.15 2.05 7.21 -2.39 -0.02 2.03 16 7 C -0.18 -2.55 9.13 71.98 0.66 -1.89 16 8 C 0.21 5.01 7.35 88.38 0.65 5.66 16 9 N -0.49 -11.85 11.55 -303.22 -3.50 -15.35 16 10 C 0.18 4.34 6.40 138.46 0.89 5.23 16 11 C 0.02 0.32 0.99 -52.93 -0.05 0.27 16 12 C -0.14 -2.15 7.97 71.98 0.57 -1.58 16 13 C -0.13 -1.71 8.46 71.98 0.61 -1.10 16 14 C -0.13 -1.99 8.46 71.98 0.61 -1.38 16 15 N -0.41 -11.89 11.47 -60.34 -0.69 -12.58 16 16 O 0.06 1.83 11.31 74.90 0.85 2.67 16 17 C 0.49 19.33 6.98 87.66 0.61 19.94 16 18 O -0.59 -29.62 15.28 -3.03 -0.05 -29.66 16 19 N -0.60 -24.19 2.86 -851.15 -2.43 -26.62 16 20 C 0.06 1.64 9.74 127.77 1.24 2.88 16 21 C 0.26 13.68 5.22 85.63 0.45 14.13 16 22 C -0.54 -30.74 9.39 25.60 0.24 -30.50 16 23 H 0.05 3.05 7.81 -2.91 -0.02 3.03 16 24 C 0.01 0.38 5.46 84.65 0.46 0.84 16 25 N -0.93 -56.12 13.29 21.45 0.28 -55.84 16 26 Si 0.97 45.07 29.54 68.60 2.03 47.09 16 27 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 28 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 29 H -0.28 -13.31 7.11 99.48 0.71 -12.60 16 30 H 0.10 1.48 7.57 -2.38 -0.02 1.46 16 31 H 0.08 1.76 5.41 -2.39 -0.01 1.75 16 32 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.36 10.73 7.28 -89.69 -0.65 10.07 16 34 H 0.06 1.01 8.13 -2.39 -0.02 0.99 16 35 H 0.09 1.08 7.43 -2.39 -0.02 1.06 16 36 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 37 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 38 H 0.10 0.95 8.14 -2.39 -0.02 0.94 16 39 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 40 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 41 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 42 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 43 H 0.04 0.77 8.14 -2.38 -0.02 0.75 16 44 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 45 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 46 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 47 H 0.06 1.87 8.11 -2.39 -0.02 1.85 16 48 H 0.11 2.05 4.11 -2.39 -0.01 2.04 16 49 H 0.02 1.32 8.07 -2.39 -0.02 1.31 16 50 H 0.00 -0.11 7.36 -2.39 -0.02 -0.13 16 51 H 0.27 15.09 8.31 -92.71 -0.77 14.32 16 Total: -1.00 -78.98 413.03 1.74 -77.24 By element: Atomic # 1 Polarization: 17.65 SS G_CDS: 0.27 Total: 17.93 kcal Atomic # 6 Polarization: 7.87 SS G_CDS: 7.79 Total: 15.66 kcal Atomic # 7 Polarization: -121.78 SS G_CDS: -9.15 Total: -130.93 kcal Atomic # 8 Polarization: -27.79 SS G_CDS: 0.80 Total: -26.99 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 2.03 Total: 47.09 kcal Total: -78.98 1.74 -77.24 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000185189612.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.101 kcal (2) G-P(sol) polarization free energy of solvation -78.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.241 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.94 seconds