Wall clock time and date at job start Tue Mar 31 2020 22:02:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.49582 * 2 1 4 4 C 1.53054 * 109.49030 * 239.95704 * 2 1 3 5 5 N 1.46954 * 109.36638 * 181.63460 * 4 2 1 6 6 C 1.46908 * 111.00078 * 183.19101 * 5 4 2 7 7 C 1.50694 * 109.47078 * 169.99733 * 6 5 4 8 8 O 1.21278 * 120.00179 * 0.02562 * 7 6 5 9 9 N 1.34780 * 120.00150 * 179.97438 * 7 6 5 10 10 C 1.46491 * 120.00340 * 180.02562 * 9 7 6 11 11 C 1.50703 * 109.47381 * 270.00362 * 10 9 7 12 12 H 1.07994 * 119.99562 * 0.02562 * 11 10 9 13 13 C 1.37874 * 120.00108 * 179.97438 * 11 10 9 14 14 N 1.31514 * 120.00098 * 180.02562 * 13 11 10 15 15 Si 1.86806 * 120.00125 * 359.97438 * 13 11 10 16 16 H 1.48502 * 109.47001 * 270.00179 * 15 13 11 17 17 H 1.48500 * 109.46892 * 30.00090 * 15 13 11 18 18 H 1.48494 * 109.47322 * 149.99828 * 15 13 11 19 19 C 1.46504 * 119.99441 * 0.02562 * 9 7 6 20 20 C 1.52999 * 109.47265 * 269.99500 * 19 9 7 21 21 C 1.47193 * 109.47323 * 180.02562 * 20 19 9 22 22 N 8.52737 * 108.95410 * 230.13377 * 2 1 3 23 23 C 1.46951 * 110.88098 * 59.32463 * 5 4 2 24 24 C 1.53053 * 109.36355 * 300.68012 * 23 5 4 25 25 N 1.46954 * 109.36522 * 58.40062 * 24 23 5 26 26 C 1.46895 * 110.99843 * 176.81374 * 25 24 23 27 27 C 1.52998 * 109.47554 * 48.46225 * 26 25 24 28 28 O 1.42904 * 109.47228 * 66.36828 * 27 26 25 29 29 H 1.08993 * 109.47502 * 180.02562 * 1 2 3 30 30 H 1.08991 * 109.46927 * 300.04253 * 1 2 3 31 31 H 1.09010 * 109.46431 * 60.03905 * 1 2 3 32 32 H 1.09008 * 109.48629 * 61.67029 * 4 2 1 33 33 H 1.08997 * 109.51134 * 301.61727 * 4 2 1 34 34 H 1.08997 * 109.46809 * 50.00052 * 6 5 4 35 35 H 1.08999 * 109.46833 * 289.99935 * 6 5 4 36 36 H 1.09001 * 109.47232 * 150.00173 * 10 9 7 37 37 H 1.09004 * 109.47151 * 30.00717 * 10 9 7 38 38 H 0.96996 * 119.99848 * 179.97438 * 14 13 11 39 39 H 1.08994 * 109.47277 * 29.99999 * 19 9 7 40 40 H 1.09003 * 109.46573 * 149.99675 * 19 9 7 41 41 H 1.09002 * 109.47057 * 300.00410 * 20 19 9 42 42 H 1.09004 * 109.46812 * 59.99867 * 20 19 9 43 43 H 1.08996 * 109.49160 * 60.64229 * 23 5 4 44 44 H 1.09003 * 109.48997 * 180.71512 * 23 5 4 45 45 H 1.09003 * 109.48568 * 298.43399 * 24 23 5 46 46 H 1.09000 * 109.49034 * 178.37289 * 24 23 5 47 47 H 1.09000 * 109.47228 * 168.46071 * 26 25 24 48 48 H 1.09001 * 109.47533 * 288.45984 * 26 25 24 49 49 H 1.09000 * 109.47416 * 186.37245 * 27 26 25 50 50 H 1.09002 * 109.47050 * 306.36989 * 27 26 25 51 51 H 0.96698 * 113.99956 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0406 -0.7224 -1.2490 5 7 3.5096 -0.7551 -1.2266 6 6 4.0411 -1.3747 -2.4480 7 6 5.5333 -1.1723 -2.5055 8 8 6.0985 -0.5715 -1.6165 9 7 6.2400 -1.6598 -3.5445 10 6 7.6906 -1.4635 -3.6002 11 6 7.9961 -0.1764 -4.3222 12 1 7.1902 0.4344 -4.7012 13 6 9.3043 0.2217 -4.4979 14 7 9.5709 1.3452 -5.1275 15 14 10.6983 -0.8339 -3.8404 16 1 11.0197 -0.4199 -2.4509 17 1 10.2854 -2.2603 -3.8490 18 1 11.8977 -0.6606 -4.6986 19 6 5.5572 -2.3861 -4.6182 20 6 5.5146 -3.8772 -4.2784 21 6 4.8292 -4.6070 -5.3574 22 7 4.2998 -5.1696 -6.1902 23 6 3.9999 -1.4493 -0.0277 24 6 3.4892 -0.7270 1.2213 25 7 2.0202 -0.6943 1.1989 26 6 1.4889 -0.0746 2.4202 27 6 2.2245 1.2401 2.6868 28 8 1.9135 2.1779 1.6543 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5145 0.8895 31 1 -0.3632 0.5133 -0.8905 32 1 1.7023 -0.1924 -2.1394 33 1 1.6544 -1.7415 -1.2636 34 1 3.5780 -0.9137 -3.3203 35 1 3.8192 -2.4419 -2.4401 36 1 8.1498 -2.2965 -4.1325 37 1 8.0899 -1.4155 -2.5871 38 1 10.4913 1.6254 -5.2507 39 1 4.5403 -2.0081 -4.7230 40 1 6.0967 -2.2420 -5.5543 41 1 6.5316 -4.2552 -4.1736 42 1 4.9752 -4.0212 -3.3421 43 1 3.6358 -2.4766 -0.0280 44 1 5.0899 -1.4493 -0.0277 45 1 3.8755 0.2922 1.2354 46 1 3.8277 -1.2568 2.1117 47 1 0.4246 0.1238 2.2935 48 1 1.6346 -0.7499 3.2633 49 1 1.9113 1.6429 3.6500 50 1 3.2993 1.0586 2.7011 51 1 2.3462 3.0363 1.7593 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000187724395.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:02:25 Heat of formation + Delta-G solvation = -24.507812 kcal Electronic energy + Delta-G solvation = -30760.763498 eV Core-core repulsion = 26696.342731 eV Total energy + Delta-G solvation = -4064.420767 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.12950 -39.16028 -37.14665 -36.78652 -35.42127 -34.88833 -32.80080 -32.54921 -31.01724 -30.38877 -28.54676 -27.12659 -26.87915 -24.58468 -24.01003 -22.55381 -22.23935 -21.35704 -19.30990 -18.49850 -17.78605 -17.66607 -16.84613 -16.78646 -16.28887 -15.89620 -15.54993 -15.26900 -15.00408 -14.64116 -14.50822 -14.40225 -14.19569 -13.87613 -13.76817 -13.35416 -13.14663 -13.00682 -12.61743 -12.50118 -12.48619 -12.32923 -12.16052 -12.08687 -11.93934 -11.73675 -11.59968 -11.57574 -11.32789 -11.08155 -11.07354 -10.85789 -10.70137 -10.65156 -10.53402 -10.19506 -9.99508 -9.56742 -9.04507 -8.61386 -8.31831 -8.11951 -7.86041 -6.10592 -4.09925 2.67081 2.75585 3.24198 3.26552 3.31693 3.33971 3.45791 3.76043 3.92821 4.10880 4.22874 4.36747 4.71490 4.86573 4.92658 4.95089 4.96562 5.05943 5.06335 5.15046 5.17453 5.23693 5.25820 5.35413 5.43110 5.48612 5.51873 5.53777 5.56628 5.62248 5.67626 5.72314 5.74966 5.82871 6.01600 6.04203 6.07999 6.18208 6.36863 6.57994 6.83907 6.92825 6.99862 7.13471 7.22389 7.24763 7.39351 7.51785 7.57235 8.11511 8.43764 8.88996 8.95263 9.49013 11.02791 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.010300 B = 0.003295 C = 0.002704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2717.778763 B = 8494.927346 C =10352.947257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.078 3.922 3 H 0.083 0.917 4 C 0.062 3.938 5 N -0.519 5.519 6 C 0.036 3.964 7 C 0.512 3.488 8 O -0.514 6.514 9 N -0.595 5.595 10 C 0.217 3.783 11 C -0.530 4.530 12 H 0.075 0.925 13 C 0.073 3.927 14 N -0.896 5.896 15 Si 0.875 3.125 16 H -0.274 1.274 17 H -0.265 1.265 18 H -0.286 1.286 19 C 0.118 3.882 20 C -0.050 4.050 21 C 0.216 3.784 22 N -0.442 5.442 23 C 0.055 3.945 24 C 0.056 3.944 25 N -0.532 5.532 26 C 0.048 3.952 27 C 0.034 3.966 28 O -0.564 6.564 29 H 0.055 0.945 30 H 0.059 0.941 31 H 0.058 0.942 32 H 0.076 0.924 33 H 0.036 0.964 34 H 0.100 0.900 35 H 0.057 0.943 36 H 0.031 0.969 37 H 0.039 0.961 38 H 0.265 0.735 39 H 0.078 0.922 40 H 0.097 0.903 41 H 0.115 0.885 42 H 0.105 0.895 43 H 0.032 0.968 44 H 0.101 0.899 45 H 0.052 0.948 46 H 0.073 0.927 47 H 0.086 0.914 48 H 0.086 0.914 49 H 0.043 0.957 50 H 0.053 0.947 51 H 0.375 0.625 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.190 -5.675 13.539 21.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.031 4.031 3 H 0.101 0.899 4 C -0.066 4.066 5 N -0.243 5.243 6 C -0.095 4.095 7 C 0.298 3.702 8 O -0.389 6.389 9 N -0.327 5.327 10 C 0.096 3.904 11 C -0.568 4.568 12 H 0.094 0.906 13 C -0.130 4.130 14 N -0.534 5.534 15 Si 0.702 3.298 16 H -0.199 1.199 17 H -0.190 1.190 18 H -0.212 1.212 19 C -0.009 4.009 20 C -0.092 4.092 21 C -0.102 4.102 22 N -0.120 5.120 23 C -0.073 4.073 24 C -0.072 4.072 25 N -0.256 5.256 26 C -0.080 4.080 27 C -0.045 4.045 28 O -0.369 6.369 29 H 0.074 0.926 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.095 0.905 33 H 0.055 0.945 34 H 0.118 0.882 35 H 0.074 0.926 36 H 0.049 0.951 37 H 0.057 0.943 38 H 0.074 0.926 39 H 0.096 0.904 40 H 0.115 0.885 41 H 0.133 0.867 42 H 0.123 0.877 43 H 0.050 0.950 44 H 0.119 0.881 45 H 0.070 0.930 46 H 0.092 0.908 47 H 0.104 0.896 48 H 0.104 0.896 49 H 0.062 0.938 50 H 0.071 0.929 51 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -16.852 -6.575 12.495 21.985 hybrid contribution 1.423 0.257 0.754 1.631 sum -15.429 -6.318 13.249 21.296 Atomic orbital electron populations 1.21832 0.94688 1.01629 1.01780 1.21820 0.94556 0.98144 0.88533 0.89931 1.22250 0.87021 0.99247 0.98074 1.61737 1.07523 1.53891 1.01196 1.22070 0.94436 0.98340 0.94673 1.20219 0.88375 0.79359 0.82239 1.90648 1.71283 1.39337 1.37585 1.47895 1.09791 1.54164 1.20878 1.19691 0.75125 0.97432 0.98129 1.21318 0.93743 1.05434 1.36333 0.90640 1.24857 0.98559 0.94897 0.94642 1.69894 1.19764 1.21853 1.41930 0.86878 0.82238 0.81218 0.79474 1.19949 1.19011 1.21164 1.21318 0.98979 0.87617 0.92968 1.19896 1.01275 0.95417 0.92613 1.29056 0.93351 0.93579 0.94251 1.81219 1.10161 1.09847 1.10737 1.22325 1.01941 0.94446 0.88600 1.22177 0.86964 1.00331 0.97695 1.62412 1.08706 1.52614 1.01900 1.22411 1.00377 0.91739 0.93515 1.23017 0.99871 0.91264 0.90354 1.86554 1.74132 1.26730 1.49533 0.92612 0.92184 0.92344 0.90523 0.94542 0.88198 0.92551 0.95105 0.94349 0.92553 0.90393 0.88506 0.86676 0.87653 0.95003 0.88109 0.93030 0.90833 0.89556 0.89606 0.93847 0.92878 0.77735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.33 8.92 37.16 0.33 -1.00 16 2 C 0.08 0.88 2.15 -67.65 -0.15 0.74 16 3 H 0.08 1.12 5.63 -51.93 -0.29 0.83 16 4 C 0.06 0.74 4.89 -3.77 -0.02 0.72 16 5 N -0.52 -7.31 4.45 -235.91 -1.05 -8.36 16 6 C 0.04 0.48 4.00 -4.97 -0.02 0.46 16 7 C 0.51 9.13 7.37 -10.99 -0.08 9.05 16 8 O -0.51 -11.39 13.92 5.56 0.08 -11.31 16 9 N -0.59 -10.40 2.46 -175.06 -0.43 -10.83 16 10 C 0.22 4.73 4.23 -5.20 -0.02 4.70 16 11 C -0.53 -14.33 9.94 -34.44 -0.34 -14.67 16 12 H 0.08 2.27 8.06 -52.49 -0.42 1.85 16 13 C 0.07 2.04 5.47 -17.82 -0.10 1.95 16 14 N -0.90 -26.93 13.96 55.43 0.77 -26.15 16 15 Si 0.87 20.58 27.47 -169.99 -4.67 15.91 16 16 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 17 H -0.27 -5.74 6.54 56.52 0.37 -5.37 16 18 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 19 C 0.12 1.50 5.17 -4.04 -0.02 1.48 16 20 C -0.05 -0.49 6.03 -29.52 -0.18 -0.67 16 21 C 0.22 2.49 15.43 -20.76 -0.32 2.17 16 22 N -0.44 -6.33 18.54 42.15 0.78 -5.55 16 23 C 0.05 0.74 5.26 -3.77 -0.02 0.72 16 24 C 0.06 0.67 4.76 -3.77 -0.02 0.66 16 25 N -0.53 -5.82 4.73 -226.49 -1.07 -6.89 16 26 C 0.05 0.42 5.85 -3.83 -0.02 0.40 16 27 C 0.03 0.29 6.63 37.16 0.25 0.54 16 28 O -0.56 -5.46 10.82 -35.23 -0.38 -5.85 16 29 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.55 6.05 -51.93 -0.31 0.24 16 31 H 0.06 0.51 8.14 -51.92 -0.42 0.09 16 32 H 0.08 0.85 8.07 -51.92 -0.42 0.43 16 33 H 0.04 0.42 8.14 -51.93 -0.42 -0.01 16 34 H 0.10 1.22 7.29 -51.93 -0.38 0.84 16 35 H 0.06 0.61 7.16 -51.93 -0.37 0.23 16 36 H 0.03 0.63 7.13 -51.93 -0.37 0.26 16 37 H 0.04 0.90 6.85 -51.93 -0.36 0.55 16 38 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 39 H 0.08 0.84 6.44 -51.93 -0.33 0.51 16 40 H 0.10 1.34 8.07 -51.93 -0.42 0.92 16 41 H 0.12 1.05 8.14 -51.93 -0.42 0.63 16 42 H 0.11 0.82 7.22 -51.93 -0.37 0.45 16 43 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 44 H 0.10 1.60 5.85 -51.93 -0.30 1.30 16 45 H 0.05 0.70 6.27 -51.93 -0.33 0.38 16 46 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 47 H 0.09 0.75 5.52 -51.93 -0.29 0.46 16 48 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 49 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 50 H 0.05 0.49 5.99 -51.93 -0.31 0.18 16 51 H 0.38 2.42 9.12 45.56 0.42 2.84 16 LS Contribution 397.34 15.07 5.99 5.99 Total: -1.00 -34.87 397.34 -8.12 -42.99 By element: Atomic # 1 Polarization: 10.22 SS G_CDS: -7.41 Total: 2.81 kcal Atomic # 6 Polarization: 7.97 SS G_CDS: -0.73 Total: 7.25 kcal Atomic # 7 Polarization: -56.79 SS G_CDS: -1.00 Total: -57.78 kcal Atomic # 8 Polarization: -16.86 SS G_CDS: -0.30 Total: -17.16 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -4.67 Total: 15.91 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -34.87 -8.12 -42.99 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187724395.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.480 kcal (2) G-P(sol) polarization free energy of solvation -34.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds