Wall clock time and date at job start Tue Mar 31 2020 22:02:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.49582 * 2 1 4 4 C 1.53054 * 109.49030 * 239.95704 * 2 1 3 5 5 N 1.46954 * 109.36638 * 181.63460 * 4 2 1 6 6 C 1.46908 * 111.00078 * 183.19101 * 5 4 2 7 7 C 1.50694 * 109.47078 * 169.99733 * 6 5 4 8 8 O 1.21278 * 120.00179 * 0.02562 * 7 6 5 9 9 N 1.34780 * 120.00150 * 179.97438 * 7 6 5 10 10 C 1.46491 * 120.00340 * 180.02562 * 9 7 6 11 11 C 1.50703 * 109.47381 * 270.00362 * 10 9 7 12 12 H 1.07994 * 119.99562 * 0.02562 * 11 10 9 13 13 C 1.37874 * 120.00108 * 179.97438 * 11 10 9 14 14 N 1.31514 * 120.00098 * 180.02562 * 13 11 10 15 15 Si 1.86806 * 120.00125 * 359.97438 * 13 11 10 16 16 H 1.48502 * 109.47001 * 270.00179 * 15 13 11 17 17 H 1.48500 * 109.46892 * 30.00090 * 15 13 11 18 18 H 1.48494 * 109.47322 * 149.99828 * 15 13 11 19 19 C 1.46504 * 119.99441 * 0.02562 * 9 7 6 20 20 C 1.52999 * 109.47265 * 269.99500 * 19 9 7 21 21 C 1.47193 * 109.47323 * 180.02562 * 20 19 9 22 22 N 8.52737 * 108.95410 * 230.13377 * 2 1 3 23 23 C 1.46951 * 110.88098 * 59.32463 * 5 4 2 24 24 C 1.53053 * 109.36355 * 300.68012 * 23 5 4 25 25 N 1.46954 * 109.36522 * 58.40062 * 24 23 5 26 26 C 1.46895 * 110.99843 * 176.81374 * 25 24 23 27 27 C 1.52998 * 109.47554 * 48.46225 * 26 25 24 28 28 O 1.42904 * 109.47228 * 66.36828 * 27 26 25 29 29 H 1.08993 * 109.47502 * 180.02562 * 1 2 3 30 30 H 1.08991 * 109.46927 * 300.04253 * 1 2 3 31 31 H 1.09010 * 109.46431 * 60.03905 * 1 2 3 32 32 H 1.09008 * 109.48629 * 61.67029 * 4 2 1 33 33 H 1.08997 * 109.51134 * 301.61727 * 4 2 1 34 34 H 1.08997 * 109.46809 * 50.00052 * 6 5 4 35 35 H 1.08999 * 109.46833 * 289.99935 * 6 5 4 36 36 H 1.09001 * 109.47232 * 150.00173 * 10 9 7 37 37 H 1.09004 * 109.47151 * 30.00717 * 10 9 7 38 38 H 0.96996 * 119.99848 * 179.97438 * 14 13 11 39 39 H 1.08994 * 109.47277 * 29.99999 * 19 9 7 40 40 H 1.09003 * 109.46573 * 149.99675 * 19 9 7 41 41 H 1.09002 * 109.47057 * 300.00410 * 20 19 9 42 42 H 1.09004 * 109.46812 * 59.99867 * 20 19 9 43 43 H 1.08996 * 109.49160 * 60.64229 * 23 5 4 44 44 H 1.09003 * 109.48997 * 180.71512 * 23 5 4 45 45 H 1.09003 * 109.48568 * 298.43399 * 24 23 5 46 46 H 1.09000 * 109.49034 * 178.37289 * 24 23 5 47 47 H 1.09000 * 109.47228 * 168.46071 * 26 25 24 48 48 H 1.09001 * 109.47533 * 288.45984 * 26 25 24 49 49 H 1.09000 * 109.47416 * 186.37245 * 27 26 25 50 50 H 1.09002 * 109.47050 * 306.36989 * 27 26 25 51 51 H 0.96698 * 113.99956 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0406 -0.7224 -1.2490 5 7 3.5096 -0.7551 -1.2266 6 6 4.0411 -1.3747 -2.4480 7 6 5.5333 -1.1723 -2.5055 8 8 6.0985 -0.5715 -1.6165 9 7 6.2400 -1.6598 -3.5445 10 6 7.6906 -1.4635 -3.6002 11 6 7.9961 -0.1764 -4.3222 12 1 7.1902 0.4344 -4.7012 13 6 9.3043 0.2217 -4.4979 14 7 9.5709 1.3452 -5.1275 15 14 10.6983 -0.8339 -3.8404 16 1 11.0197 -0.4199 -2.4509 17 1 10.2854 -2.2603 -3.8490 18 1 11.8977 -0.6606 -4.6986 19 6 5.5572 -2.3861 -4.6182 20 6 5.5146 -3.8772 -4.2784 21 6 4.8292 -4.6070 -5.3574 22 7 4.2998 -5.1696 -6.1902 23 6 3.9999 -1.4493 -0.0277 24 6 3.4892 -0.7270 1.2213 25 7 2.0202 -0.6943 1.1989 26 6 1.4889 -0.0746 2.4202 27 6 2.2245 1.2401 2.6868 28 8 1.9135 2.1779 1.6543 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5145 0.8895 31 1 -0.3632 0.5133 -0.8905 32 1 1.7023 -0.1924 -2.1394 33 1 1.6544 -1.7415 -1.2636 34 1 3.5780 -0.9137 -3.3203 35 1 3.8192 -2.4419 -2.4401 36 1 8.1498 -2.2965 -4.1325 37 1 8.0899 -1.4155 -2.5871 38 1 10.4913 1.6254 -5.2507 39 1 4.5403 -2.0081 -4.7230 40 1 6.0967 -2.2420 -5.5543 41 1 6.5316 -4.2552 -4.1736 42 1 4.9752 -4.0212 -3.3421 43 1 3.6358 -2.4766 -0.0280 44 1 5.0899 -1.4493 -0.0277 45 1 3.8755 0.2922 1.2354 46 1 3.8277 -1.2568 2.1117 47 1 0.4246 0.1238 2.2935 48 1 1.6346 -0.7499 3.2633 49 1 1.9113 1.6429 3.6500 50 1 3.2993 1.0586 2.7011 51 1 2.3462 3.0363 1.7593 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000187724395.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:02:24 Heat of formation + Delta-G solvation = -53.243310 kcal Electronic energy + Delta-G solvation = -30762.009563 eV Core-core repulsion = 26696.342731 eV Total energy + Delta-G solvation = -4065.666832 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.21436 -40.28991 -38.10252 -37.74605 -36.67760 -35.88709 -34.76850 -33.41441 -32.33762 -31.36883 -29.96226 -28.10570 -27.95709 -25.61284 -25.20621 -23.98804 -23.15488 -22.43338 -20.20008 -19.82434 -19.13567 -18.51394 -18.39569 -17.97364 -17.25007 -17.09684 -16.58473 -16.32967 -16.02236 -15.89856 -15.71383 -15.56780 -15.22001 -15.00914 -14.72179 -14.50547 -14.40417 -14.11289 -13.96219 -13.71955 -13.54281 -13.34958 -13.26557 -13.11977 -12.92872 -12.87791 -12.72273 -12.67540 -12.45663 -12.37379 -12.22191 -11.94269 -11.91886 -11.85995 -11.67438 -11.55871 -11.49911 -10.75547 -10.74209 -10.44383 -9.43073 -9.21906 -9.04204 -8.25966 -6.30327 1.39345 1.43527 1.50885 1.70127 1.85907 1.89526 2.23942 2.37905 2.93470 2.98967 3.09890 3.20397 3.46630 3.77552 3.89213 4.03749 4.10971 4.12923 4.20189 4.24665 4.32203 4.36877 4.37889 4.48449 4.52933 4.60727 4.62614 4.64550 4.81012 4.82798 4.84245 4.85572 4.90444 4.94989 4.98749 5.03610 5.08370 5.11965 5.21160 5.34631 5.49620 5.55299 5.67623 5.97492 6.08509 6.26082 6.29378 6.33168 6.62331 6.73074 6.76229 6.81902 7.30674 7.53958 8.91212 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.010300 B = 0.003295 C = 0.002704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2717.778763 B = 8494.927346 C =10352.947257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.077 3.923 3 H 0.058 0.942 4 C 0.065 3.935 5 N -0.545 5.545 6 C 0.046 3.954 7 C 0.506 3.494 8 O -0.566 6.566 9 N -0.597 5.597 10 C 0.225 3.775 11 C -0.531 4.531 12 H 0.027 0.973 13 C 0.007 3.993 14 N -0.951 5.951 15 Si 0.945 3.055 16 H -0.279 1.279 17 H -0.226 1.226 18 H -0.284 1.284 19 C 0.112 3.888 20 C -0.036 4.036 21 C 0.245 3.755 22 N -0.491 5.491 23 C 0.060 3.940 24 C 0.062 3.938 25 N -0.530 5.530 26 C 0.045 3.955 27 C 0.035 3.965 28 O -0.582 6.582 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.063 0.937 32 H 0.082 0.918 33 H 0.048 0.952 34 H 0.114 0.886 35 H 0.095 0.905 36 H 0.059 0.941 37 H 0.024 0.976 38 H 0.265 0.735 39 H 0.100 0.900 40 H 0.084 0.916 41 H 0.129 0.871 42 H 0.136 0.864 43 H 0.045 0.955 44 H 0.072 0.928 45 H 0.027 0.973 46 H 0.087 0.913 47 H 0.091 0.909 48 H 0.103 0.897 49 H 0.063 0.937 50 H 0.042 0.958 51 H 0.386 0.614 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.487 -8.425 14.710 24.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.031 4.031 3 H 0.076 0.924 4 C -0.063 4.063 5 N -0.270 5.270 6 C -0.085 4.085 7 C 0.294 3.706 8 O -0.444 6.444 9 N -0.328 5.328 10 C 0.103 3.897 11 C -0.570 4.570 12 H 0.046 0.954 13 C -0.190 4.190 14 N -0.592 5.592 15 Si 0.768 3.232 16 H -0.205 1.205 17 H -0.149 1.149 18 H -0.210 1.210 19 C -0.013 4.013 20 C -0.077 4.077 21 C -0.073 4.073 22 N -0.169 5.169 23 C -0.068 4.068 24 C -0.066 4.066 25 N -0.254 5.254 26 C -0.083 4.083 27 C -0.044 4.044 28 O -0.390 6.390 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.082 0.918 32 H 0.100 0.900 33 H 0.067 0.933 34 H 0.131 0.869 35 H 0.112 0.888 36 H 0.077 0.923 37 H 0.043 0.957 38 H 0.074 0.926 39 H 0.118 0.882 40 H 0.102 0.898 41 H 0.147 0.853 42 H 0.153 0.847 43 H 0.063 0.937 44 H 0.091 0.909 45 H 0.045 0.955 46 H 0.106 0.894 47 H 0.109 0.891 48 H 0.121 0.879 49 H 0.081 0.919 50 H 0.060 0.940 51 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -18.202 -9.362 13.647 24.601 hybrid contribution 1.758 1.250 0.387 2.192 sum -16.444 -8.112 14.034 23.090 Atomic orbital electron populations 1.21758 0.93033 1.02120 1.02173 1.21798 0.95775 0.96769 0.88804 0.92447 1.22279 0.85486 0.99984 0.98513 1.61674 1.09009 1.54843 1.01506 1.22042 0.90674 1.00732 0.95055 1.21075 0.90215 0.78027 0.81272 1.90630 1.72664 1.41570 1.39580 1.47855 1.08371 1.54564 1.22034 1.19365 0.78320 0.95460 0.96588 1.21641 0.92529 1.06976 1.35877 0.95449 1.25868 1.01852 0.96312 0.94952 1.70071 1.20437 1.24400 1.44254 0.85761 0.78167 0.81300 0.77989 1.20460 1.14869 1.21017 1.21516 0.99432 0.89388 0.90926 1.19843 1.02426 0.92501 0.92935 1.29183 0.92082 0.92525 0.93461 1.81266 1.11959 1.11452 1.12179 1.22193 1.00271 0.95259 0.89082 1.22083 0.87841 0.98959 0.97722 1.62450 1.07698 1.52735 1.02558 1.22538 1.00460 0.92114 0.93171 1.23026 0.99188 0.91232 0.90950 1.86521 1.74462 1.27648 1.50321 0.91938 0.92001 0.91822 0.90010 0.93344 0.86854 0.88779 0.92286 0.95743 0.92596 0.88159 0.89799 0.85311 0.84668 0.93667 0.90929 0.95461 0.89431 0.89090 0.87913 0.91900 0.94013 0.76483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.24 8.92 71.98 0.64 -1.59 16 2 C 0.08 1.65 2.15 44.92 0.10 1.75 16 3 H 0.06 1.55 5.63 -2.39 -0.01 1.54 16 4 C 0.06 1.40 4.89 86.31 0.42 1.83 16 5 N -0.55 -14.70 4.45 -900.28 -4.00 -18.70 16 6 C 0.05 1.11 4.00 85.55 0.34 1.46 16 7 C 0.51 17.67 7.37 87.65 0.65 18.32 16 8 O -0.57 -25.65 13.92 -3.02 -0.04 -25.70 16 9 N -0.60 -20.07 2.46 -826.17 -2.03 -22.10 16 10 C 0.22 9.61 4.23 85.64 0.36 9.97 16 11 C -0.53 -29.48 9.94 25.60 0.25 -29.23 16 12 H 0.03 1.73 8.06 -2.91 -0.02 1.70 16 13 C 0.01 0.42 5.47 84.65 0.46 0.89 16 14 N -0.95 -59.30 13.96 21.45 0.30 -59.00 16 15 Si 0.94 42.30 27.47 68.60 1.88 44.19 16 16 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 17 H -0.23 -8.62 6.54 99.48 0.65 -7.97 16 18 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 19 C 0.11 2.58 5.17 86.38 0.45 3.02 16 20 C -0.04 -0.55 6.03 28.79 0.17 -0.38 16 21 C 0.24 4.90 15.43 89.44 1.38 6.28 16 22 N -0.49 -13.03 18.54 20.00 0.37 -12.66 16 23 C 0.06 1.56 5.26 86.31 0.45 2.01 16 24 C 0.06 1.45 4.76 86.31 0.41 1.87 16 25 N -0.53 -10.75 4.73 -870.49 -4.12 -14.87 16 26 C 0.04 0.72 5.85 86.30 0.51 1.22 16 27 C 0.04 0.57 6.63 71.98 0.48 1.05 16 28 O -0.58 -11.17 10.82 -148.98 -1.61 -12.78 16 29 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.06 1.02 6.05 -2.39 -0.01 1.00 16 31 H 0.06 0.99 8.14 -2.38 -0.02 0.97 16 32 H 0.08 1.65 8.07 -2.38 -0.02 1.63 16 33 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 34 H 0.11 2.48 7.29 -2.39 -0.02 2.46 16 35 H 0.09 1.60 7.16 -2.39 -0.02 1.59 16 36 H 0.06 2.21 7.13 -2.39 -0.02 2.20 16 37 H 0.02 1.13 6.85 -2.38 -0.02 1.11 16 38 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 39 H 0.10 1.87 6.44 -2.39 -0.02 1.85 16 40 H 0.08 2.18 8.07 -2.39 -0.02 2.16 16 41 H 0.13 1.77 8.14 -2.39 -0.02 1.75 16 42 H 0.14 1.39 7.22 -2.38 -0.02 1.37 16 43 H 0.05 1.03 8.14 -2.39 -0.02 1.02 16 44 H 0.07 2.32 5.85 -2.39 -0.01 2.31 16 45 H 0.03 0.77 6.27 -2.39 -0.01 0.75 16 46 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 47 H 0.09 1.39 5.52 -2.39 -0.01 1.37 16 48 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 49 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 50 H 0.04 0.77 5.99 -2.39 -0.01 0.76 16 51 H 0.39 5.08 9.12 -74.06 -0.68 4.40 16 Total: -1.00 -80.72 397.34 -1.96 -82.68 By element: Atomic # 1 Polarization: 20.28 SS G_CDS: 0.22 Total: 20.50 kcal Atomic # 6 Polarization: 11.38 SS G_CDS: 7.08 Total: 18.46 kcal Atomic # 7 Polarization: -117.86 SS G_CDS: -9.48 Total: -127.34 kcal Atomic # 8 Polarization: -36.82 SS G_CDS: -1.65 Total: -38.48 kcal Atomic # 14 Polarization: 42.30 SS G_CDS: 1.88 Total: 44.19 kcal Total: -80.72 -1.96 -82.68 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187724395.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.437 kcal (2) G-P(sol) polarization free energy of solvation -80.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds