Wall clock time and date at job start Tue Mar 31 2020 22:17:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42894 * 114.00080 * 2 1 4 4 C 1.53000 * 109.47444 * 180.02562 * 3 2 1 5 5 O 1.42902 * 109.47388 * 64.99866 * 4 3 2 6 6 C 1.42895 * 114.00223 * 180.02562 * 5 4 3 7 7 H 1.09001 * 109.47251 * 30.00571 * 6 5 4 8 8 C 1.52992 * 109.47307 * 269.99939 * 6 5 4 9 9 C 1.50704 * 109.46856 * 150.00263 * 6 5 4 10 10 N 1.30285 * 126.35201 * 45.02658 * 9 6 5 11 11 N 1.28522 * 110.05925 * 179.97438 * 10 9 6 12 12 C 1.31222 * 109.86083 * 0.02562 * 11 10 9 13 13 N 1.38569 * 126.47605 * 179.97438 * 12 11 10 14 14 C 1.46905 * 110.99741 * 255.36922 * 13 12 11 15 15 C 1.50696 * 109.47446 * 61.42852 * 14 13 12 16 16 H 1.08003 * 119.99692 * 354.83334 * 15 14 13 17 17 C 1.37875 * 119.99947 * 174.83062 * 15 14 13 18 18 N 1.31512 * 120.00317 * 0.02562 * 17 15 14 19 19 Si 1.86805 * 119.99980 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.47088 * 0.02562 * 19 17 15 21 21 H 1.48499 * 109.47012 * 119.99778 * 19 17 15 22 22 H 1.48493 * 109.47119 * 240.00169 * 19 17 15 23 23 C 1.46906 * 111.00174 * 19.31673 * 13 12 11 24 24 C 1.52997 * 109.47168 * 163.88658 * 23 13 12 25 25 C 1.53004 * 117.49707 * 243.98848 * 24 23 13 26 26 C 1.53000 * 117.49891 * 175.33354 * 24 23 13 27 27 N 1.36459 * 107.04934 * 0.23775 * 12 11 10 28 28 C 1.46499 * 127.13440 * 179.72087 * 27 12 11 29 29 H 1.08995 * 109.46614 * 299.99695 * 1 2 3 30 30 H 1.08998 * 109.47151 * 59.99546 * 1 2 3 31 31 H 1.08999 * 109.46846 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47362 * 60.00261 * 3 2 1 33 33 H 1.08999 * 109.47484 * 300.00120 * 3 2 1 34 34 H 1.09008 * 109.47055 * 305.00282 * 4 3 2 35 35 H 1.08999 * 109.47727 * 185.00397 * 4 3 2 36 36 H 1.09001 * 109.47481 * 300.00491 * 8 6 5 37 37 H 1.09006 * 109.46910 * 60.00298 * 8 6 5 38 38 H 1.08999 * 109.47152 * 179.97438 * 8 6 5 39 39 H 1.09007 * 109.46729 * 181.43074 * 14 13 12 40 40 H 1.09003 * 109.46908 * 301.42822 * 14 13 12 41 41 H 0.96996 * 120.00273 * 180.02562 * 18 17 15 42 42 H 1.08997 * 109.47429 * 283.88561 * 23 13 12 43 43 H 1.09001 * 109.46545 * 43.88513 * 23 13 12 44 44 H 1.09000 * 115.55189 * 29.65324 * 24 23 13 45 45 H 1.08998 * 117.50076 * 0.02562 * 25 24 23 46 46 H 1.09000 * 117.49759 * 145.01796 * 25 24 23 47 47 H 1.09005 * 117.49544 * 214.97468 * 26 24 23 48 48 H 1.09000 * 117.50027 * 359.97438 * 26 24 23 49 49 H 1.08997 * 109.46595 * 95.28332 * 28 27 12 50 50 H 1.08996 * 109.46853 * 215.28245 * 28 27 12 51 51 H 1.09000 * 109.47025 * 335.28375 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1847 -0.0006 5 8 3.9650 0.5796 -1.2220 6 6 5.3812 0.4192 -1.3246 7 1 5.8043 0.2820 -0.3295 8 6 5.9902 1.6652 -1.9704 9 6 5.6898 -0.7879 -2.1725 10 7 5.1265 -1.1006 -3.3049 11 7 5.6274 -2.1935 -3.7594 12 6 6.5444 -2.6406 -2.9342 13 7 7.3002 -3.7918 -3.0880 14 6 6.8241 -4.8573 -2.1957 15 6 5.3977 -5.2008 -2.5398 16 1 4.8679 -4.6244 -3.2838 17 6 4.7692 -6.2509 -1.9049 18 7 5.4141 -6.9525 -0.9986 19 14 3.0008 -6.6764 -2.3310 20 1 2.5043 -5.7422 -3.3732 21 1 2.9364 -8.0686 -2.8437 22 1 2.1563 -6.5568 -1.1155 23 6 7.3005 -4.2384 -4.4875 24 6 8.4351 -5.2421 -4.7024 25 6 9.5563 -4.8455 -5.6649 26 6 8.5364 -5.9107 -6.0748 27 7 6.6090 -1.7609 -1.8930 28 6 7.4836 -1.8410 -0.7205 29 1 -0.3632 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.6887 1.8463 0.8900 33 1 1.6887 1.8464 -0.8899 34 1 3.8515 0.5681 0.8410 35 1 3.9786 2.1765 0.0890 36 1 5.5670 1.8025 -2.9655 37 1 5.7669 2.5383 -1.3571 38 1 7.0705 1.5430 -2.0483 39 1 7.4505 -5.7409 -2.3184 40 1 6.8762 -4.5156 -1.1619 41 1 4.9721 -7.6915 -0.5523 42 1 6.3468 -4.7134 -4.7176 43 1 7.4461 -3.3796 -5.1428 44 1 8.7071 -5.8378 -3.8310 45 1 9.4859 -3.8693 -6.1447 46 1 10.5659 -5.1806 -5.4269 47 1 8.8754 -6.9462 -6.1064 48 1 7.7945 -5.6358 -6.8246 49 1 8.3791 -1.2443 -0.8940 50 1 6.9559 -1.4587 0.1532 51 1 7.7666 -2.8795 -0.5486 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000349806962.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:17:52 Heat of formation + Delta-G solvation = 30.254244 kcal Electronic energy + Delta-G solvation = -30791.683587 eV Core-core repulsion = 26729.637481 eV Total energy + Delta-G solvation = -4062.046107 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.87 seconds Orbital eigenvalues (eV) -42.26722 -38.66034 -37.83643 -37.33739 -35.61451 -34.35836 -32.64196 -32.16080 -29.76237 -28.52666 -27.37945 -27.11956 -26.32930 -25.34368 -23.89380 -22.63103 -22.58623 -21.97161 -20.57548 -20.05830 -19.27760 -17.10259 -16.88817 -16.65218 -16.49592 -15.94143 -15.70240 -15.49532 -15.28717 -14.91690 -14.80599 -14.34529 -14.31829 -13.74705 -13.45374 -13.10282 -12.99907 -12.83321 -12.66422 -12.48202 -12.42769 -12.15038 -11.81992 -11.69552 -11.28418 -11.24236 -11.16118 -11.04514 -11.01323 -10.80913 -10.66528 -10.50487 -10.18002 -10.02774 -9.87114 -9.76489 -9.69609 -9.57357 -9.46718 -9.36657 -8.65407 -8.48308 -7.42224 -6.10521 -4.16447 2.33888 2.80653 3.30455 3.38343 3.48230 3.51520 3.70757 3.81862 4.23810 4.43803 4.55223 4.63890 4.75852 4.93997 4.96436 5.04956 5.11975 5.16997 5.23695 5.24009 5.26617 5.29315 5.35455 5.39867 5.40731 5.52633 5.54860 5.63720 5.65012 5.66632 5.71653 5.90952 5.94428 6.00149 6.07253 6.15048 6.26443 6.32323 6.47273 6.59022 6.74880 6.89857 7.00197 7.06800 7.20518 7.28809 7.30033 7.60467 7.87052 8.07993 8.18787 8.93268 9.50968 9.54002 10.96343 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.009277 B = 0.004039 C = 0.003125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3017.619489 B = 6930.762724 C = 8959.223655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.378 6.378 3 C 0.064 3.936 4 C 0.061 3.939 5 O -0.352 6.352 6 C 0.190 3.810 7 H 0.071 0.929 8 C -0.164 4.164 9 C 0.144 3.856 10 N -0.257 5.257 11 N -0.331 5.331 12 C 0.413 3.587 13 N -0.467 5.467 14 C 0.191 3.809 15 C -0.549 4.549 16 H 0.071 0.929 17 C 0.070 3.930 18 N -0.893 5.893 19 Si 0.889 3.111 20 H -0.269 1.269 21 H -0.282 1.282 22 H -0.284 1.284 23 C 0.108 3.892 24 C -0.129 4.129 25 C -0.186 4.186 26 C -0.180 4.180 27 N -0.475 5.475 28 C 0.081 3.919 29 H 0.037 0.963 30 H 0.041 0.959 31 H 0.086 0.914 32 H 0.062 0.938 33 H 0.059 0.941 34 H 0.058 0.942 35 H 0.065 0.935 36 H 0.075 0.925 37 H 0.063 0.937 38 H 0.066 0.934 39 H 0.054 0.946 40 H 0.028 0.972 41 H 0.262 0.738 42 H 0.074 0.926 43 H 0.064 0.936 44 H 0.110 0.890 45 H 0.088 0.912 46 H 0.087 0.913 47 H 0.090 0.910 48 H 0.091 0.909 49 H 0.073 0.927 50 H 0.077 0.923 51 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.629 15.750 3.298 16.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.297 6.297 3 C -0.013 4.013 4 C -0.016 4.016 5 O -0.270 6.270 6 C 0.129 3.871 7 H 0.088 0.912 8 C -0.222 4.222 9 C -0.124 4.124 10 N -0.097 5.097 11 N -0.176 5.176 12 C 0.057 3.943 13 N -0.191 5.191 14 C 0.068 3.932 15 C -0.588 4.588 16 H 0.089 0.911 17 C -0.133 4.133 18 N -0.531 5.531 19 Si 0.717 3.283 20 H -0.193 1.193 21 H -0.208 1.208 22 H -0.210 1.210 23 C -0.019 4.019 24 C -0.147 4.147 25 C -0.223 4.223 26 C -0.217 4.217 27 N -0.171 5.171 28 C -0.063 4.063 29 H 0.056 0.944 30 H 0.060 0.940 31 H 0.105 0.895 32 H 0.080 0.920 33 H 0.077 0.923 34 H 0.076 0.924 35 H 0.083 0.917 36 H 0.094 0.906 37 H 0.082 0.918 38 H 0.085 0.915 39 H 0.072 0.928 40 H 0.045 0.955 41 H 0.072 0.928 42 H 0.092 0.908 43 H 0.083 0.917 44 H 0.128 0.872 45 H 0.107 0.893 46 H 0.105 0.895 47 H 0.109 0.891 48 H 0.110 0.890 49 H 0.092 0.908 50 H 0.096 0.904 51 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 2.182 15.539 2.231 15.850 hybrid contribution -0.898 -0.480 1.258 1.618 sum 1.285 15.059 3.489 15.511 Atomic orbital electron populations 1.22739 0.81179 1.03011 0.99526 1.88051 1.19492 1.26866 1.95272 1.22519 0.92277 0.85835 1.00649 1.22608 0.93732 0.97423 0.87862 1.88166 1.20091 1.81608 1.37099 1.19793 0.82840 0.89003 0.95432 0.91153 1.22218 1.00977 0.96190 1.02826 1.23819 0.95416 0.95146 0.98005 1.73831 1.19943 1.08574 1.07384 1.74699 1.08498 1.07667 1.26776 1.22517 0.93086 0.92548 0.86150 1.59305 1.47142 1.02826 1.09853 1.20002 0.95339 0.87555 0.90332 1.21824 0.97929 1.15484 1.23538 0.91060 1.24876 0.98154 0.95663 0.94614 1.69933 1.37095 1.20278 1.25838 0.86542 0.84841 0.78249 0.78675 1.19299 1.20821 1.20979 1.21430 0.97926 0.96393 0.86138 1.22220 0.97692 1.00981 0.93838 1.23002 0.94864 0.99414 1.04984 1.22905 1.02429 0.97509 0.98897 1.45795 1.32483 1.19089 1.19741 1.21990 0.93191 1.05568 0.85537 0.94426 0.94013 0.89532 0.92022 0.92292 0.92400 0.91714 0.90564 0.91777 0.91541 0.92781 0.95456 0.92808 0.90822 0.91726 0.87152 0.89336 0.89482 0.89129 0.89009 0.90799 0.90449 0.88210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 11.01 101.05 1.11 1.47 16 2 O -0.38 -5.67 10.67 -40.08 -0.43 -6.10 16 3 C 0.06 0.71 6.32 37.16 0.23 0.95 16 4 C 0.06 0.69 6.13 37.16 0.23 0.92 16 5 O -0.35 -5.60 9.94 -40.08 -0.40 -6.00 16 6 C 0.19 2.73 3.14 -27.88 -0.09 2.64 16 7 H 0.07 0.82 6.73 -51.93 -0.35 0.47 16 8 C -0.16 -1.85 9.51 37.15 0.35 -1.49 16 9 C 0.14 2.77 6.95 -154.02 -1.07 1.70 16 10 N -0.26 -5.92 12.18 32.99 0.40 -5.52 16 11 N -0.33 -8.06 10.93 30.31 0.33 -7.73 16 12 C 0.41 9.22 5.84 -318.88 -1.86 7.36 16 13 N -0.47 -10.11 4.67 -175.87 -0.82 -10.93 16 14 C 0.19 4.73 4.82 -4.97 -0.02 4.70 16 15 C -0.55 -15.36 7.52 -34.44 -0.26 -15.62 16 16 H 0.07 2.12 6.35 -52.48 -0.33 1.79 16 17 C 0.07 1.98 5.46 -17.82 -0.10 1.89 16 18 N -0.89 -25.80 13.29 55.43 0.74 -25.07 16 19 Si 0.89 22.63 29.54 -169.99 -5.02 17.61 16 20 H -0.27 -7.03 7.11 56.52 0.40 -6.63 16 21 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 22 H -0.28 -7.19 7.11 56.52 0.40 -6.79 16 23 C 0.11 2.21 4.58 -3.82 -0.02 2.19 16 24 C -0.13 -2.25 5.71 -90.62 -0.52 -2.77 16 25 C -0.19 -2.66 10.18 -26.69 -0.27 -2.94 16 26 C -0.18 -2.69 10.25 -26.70 -0.27 -2.97 16 27 N -0.48 -9.11 3.21 -121.46 -0.39 -9.50 16 28 C 0.08 1.14 10.90 59.85 0.65 1.80 16 29 H 0.04 0.33 8.14 -51.93 -0.42 -0.10 16 30 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 33 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.06 0.65 8.09 -51.92 -0.42 0.23 16 35 H 0.06 0.51 7.87 -51.93 -0.41 0.10 16 36 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.06 0.54 7.87 -51.93 -0.41 0.13 16 38 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.05 1.39 6.65 -51.93 -0.35 1.04 16 40 H 0.03 0.71 6.53 -51.93 -0.34 0.37 16 41 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 42 H 0.07 1.71 6.46 -51.93 -0.34 1.38 16 43 H 0.06 1.28 7.56 -51.93 -0.39 0.89 16 44 H 0.11 2.06 6.79 -51.93 -0.35 1.71 16 45 H 0.09 1.23 8.03 -51.93 -0.42 0.81 16 46 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 47 H 0.09 1.25 8.14 -51.93 -0.42 0.82 16 48 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 49 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 50 H 0.08 0.91 7.32 -51.93 -0.38 0.53 16 51 H 0.10 1.55 6.38 -51.93 -0.33 1.21 16 LS Contribution 414.54 15.07 6.25 6.25 Total: -1.00 -35.37 414.54 -9.84 -45.21 By element: Atomic # 1 Polarization: 10.55 SS G_CDS: -8.60 Total: 1.95 kcal Atomic # 6 Polarization: 1.73 SS G_CDS: -1.90 Total: -0.17 kcal Atomic # 7 Polarization: -59.00 SS G_CDS: 0.26 Total: -58.74 kcal Atomic # 8 Polarization: -11.28 SS G_CDS: -0.83 Total: -12.10 kcal Atomic # 14 Polarization: 22.63 SS G_CDS: -5.02 Total: 17.61 kcal Total LS contribution 6.25 Total: 6.25 kcal Total: -35.37 -9.84 -45.21 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000349806962.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.463 kcal (2) G-P(sol) polarization free energy of solvation -35.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.209 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.87 seconds