Wall clock time and date at job start Tue Mar 31 2020 22:17:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42894 * 114.00080 * 2 1 4 4 C 1.53000 * 109.47444 * 180.02562 * 3 2 1 5 5 O 1.42902 * 109.47388 * 64.99866 * 4 3 2 6 6 C 1.42895 * 114.00223 * 180.02562 * 5 4 3 7 7 H 1.09001 * 109.47251 * 30.00571 * 6 5 4 8 8 C 1.52992 * 109.47307 * 269.99939 * 6 5 4 9 9 C 1.50704 * 109.46856 * 150.00263 * 6 5 4 10 10 N 1.30285 * 126.35201 * 45.02658 * 9 6 5 11 11 N 1.28522 * 110.05925 * 179.97438 * 10 9 6 12 12 C 1.31222 * 109.86083 * 0.02562 * 11 10 9 13 13 N 1.38569 * 126.47605 * 179.97438 * 12 11 10 14 14 C 1.46905 * 110.99741 * 255.36922 * 13 12 11 15 15 C 1.50696 * 109.47446 * 61.42852 * 14 13 12 16 16 H 1.08003 * 119.99692 * 354.83334 * 15 14 13 17 17 C 1.37875 * 119.99947 * 174.83062 * 15 14 13 18 18 N 1.31512 * 120.00317 * 0.02562 * 17 15 14 19 19 Si 1.86805 * 119.99980 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.47088 * 0.02562 * 19 17 15 21 21 H 1.48499 * 109.47012 * 119.99778 * 19 17 15 22 22 H 1.48493 * 109.47119 * 240.00169 * 19 17 15 23 23 C 1.46906 * 111.00174 * 19.31673 * 13 12 11 24 24 C 1.52997 * 109.47168 * 163.88658 * 23 13 12 25 25 C 1.53004 * 117.49707 * 243.98848 * 24 23 13 26 26 C 1.53000 * 117.49891 * 175.33354 * 24 23 13 27 27 N 1.36459 * 107.04934 * 0.23775 * 12 11 10 28 28 C 1.46499 * 127.13440 * 179.72087 * 27 12 11 29 29 H 1.08995 * 109.46614 * 299.99695 * 1 2 3 30 30 H 1.08998 * 109.47151 * 59.99546 * 1 2 3 31 31 H 1.08999 * 109.46846 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47362 * 60.00261 * 3 2 1 33 33 H 1.08999 * 109.47484 * 300.00120 * 3 2 1 34 34 H 1.09008 * 109.47055 * 305.00282 * 4 3 2 35 35 H 1.08999 * 109.47727 * 185.00397 * 4 3 2 36 36 H 1.09001 * 109.47481 * 300.00491 * 8 6 5 37 37 H 1.09006 * 109.46910 * 60.00298 * 8 6 5 38 38 H 1.08999 * 109.47152 * 179.97438 * 8 6 5 39 39 H 1.09007 * 109.46729 * 181.43074 * 14 13 12 40 40 H 1.09003 * 109.46908 * 301.42822 * 14 13 12 41 41 H 0.96996 * 120.00273 * 180.02562 * 18 17 15 42 42 H 1.08997 * 109.47429 * 283.88561 * 23 13 12 43 43 H 1.09001 * 109.46545 * 43.88513 * 23 13 12 44 44 H 1.09000 * 115.55189 * 29.65324 * 24 23 13 45 45 H 1.08998 * 117.50076 * 0.02562 * 25 24 23 46 46 H 1.09000 * 117.49759 * 145.01796 * 25 24 23 47 47 H 1.09005 * 117.49544 * 214.97468 * 26 24 23 48 48 H 1.09000 * 117.50027 * 359.97438 * 26 24 23 49 49 H 1.08997 * 109.46595 * 95.28332 * 28 27 12 50 50 H 1.08996 * 109.46853 * 215.28245 * 28 27 12 51 51 H 1.09000 * 109.47025 * 335.28375 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1847 -0.0006 5 8 3.9650 0.5796 -1.2220 6 6 5.3812 0.4192 -1.3246 7 1 5.8043 0.2820 -0.3295 8 6 5.9902 1.6652 -1.9704 9 6 5.6898 -0.7879 -2.1725 10 7 5.1265 -1.1006 -3.3049 11 7 5.6274 -2.1935 -3.7594 12 6 6.5444 -2.6406 -2.9342 13 7 7.3002 -3.7918 -3.0880 14 6 6.8241 -4.8573 -2.1957 15 6 5.3977 -5.2008 -2.5398 16 1 4.8679 -4.6244 -3.2838 17 6 4.7692 -6.2509 -1.9049 18 7 5.4141 -6.9525 -0.9986 19 14 3.0008 -6.6764 -2.3310 20 1 2.5043 -5.7422 -3.3732 21 1 2.9364 -8.0686 -2.8437 22 1 2.1563 -6.5568 -1.1155 23 6 7.3005 -4.2384 -4.4875 24 6 8.4351 -5.2421 -4.7024 25 6 9.5563 -4.8455 -5.6649 26 6 8.5364 -5.9107 -6.0748 27 7 6.6090 -1.7609 -1.8930 28 6 7.4836 -1.8410 -0.7205 29 1 -0.3632 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.6887 1.8463 0.8900 33 1 1.6887 1.8464 -0.8899 34 1 3.8515 0.5681 0.8410 35 1 3.9786 2.1765 0.0890 36 1 5.5670 1.8025 -2.9655 37 1 5.7669 2.5383 -1.3571 38 1 7.0705 1.5430 -2.0483 39 1 7.4505 -5.7409 -2.3184 40 1 6.8762 -4.5156 -1.1619 41 1 4.9721 -7.6915 -0.5523 42 1 6.3468 -4.7134 -4.7176 43 1 7.4461 -3.3796 -5.1428 44 1 8.7071 -5.8378 -3.8310 45 1 9.4859 -3.8693 -6.1447 46 1 10.5659 -5.1806 -5.4269 47 1 8.8754 -6.9462 -6.1064 48 1 7.7945 -5.6358 -6.8246 49 1 8.3791 -1.2443 -0.8940 50 1 6.9559 -1.4587 0.1532 51 1 7.7666 -2.8795 -0.5486 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000349806962.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:17:48 Heat of formation + Delta-G solvation = 7.415550 kcal Electronic energy + Delta-G solvation = -30792.673947 eV Core-core repulsion = 26729.637481 eV Total energy + Delta-G solvation = -4063.036467 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 4.83 seconds Orbital eigenvalues (eV) -43.86327 -39.72676 -39.32187 -38.36570 -37.12780 -35.83129 -34.69223 -33.34273 -30.73824 -30.07748 -29.18777 -28.44807 -27.22725 -27.11261 -25.15832 -24.46357 -23.50722 -23.15648 -21.99336 -21.56799 -20.81144 -18.79231 -18.22136 -17.98581 -17.60679 -17.48387 -17.08315 -16.87552 -16.53250 -16.35784 -15.93431 -15.85980 -15.54809 -15.37942 -14.78306 -14.68241 -14.19504 -14.04476 -13.88784 -13.68793 -13.52056 -13.25810 -13.24404 -13.06848 -12.99905 -12.69439 -12.56300 -12.47881 -12.35367 -12.28053 -12.08151 -12.02468 -11.99997 -11.91959 -11.30601 -11.19339 -10.93986 -10.86788 -10.73657 -10.66979 -10.63079 -10.33041 -9.21239 -8.29187 -6.40992 0.80770 1.24744 1.27722 1.38867 1.41647 1.90561 2.30785 2.70143 2.88080 2.88904 3.00728 3.14780 3.35930 3.74586 3.81258 3.92288 4.06955 4.10202 4.13295 4.17382 4.26011 4.31696 4.36752 4.39660 4.40479 4.44560 4.52963 4.54545 4.55707 4.59963 4.70888 4.77516 4.80824 4.82844 4.86016 4.91938 5.01318 5.06048 5.10379 5.13225 5.19568 5.26889 5.32943 5.41145 5.61939 5.69732 5.83324 6.00295 6.16175 6.31462 6.46448 6.72742 7.28472 7.89351 8.75944 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.009277 B = 0.004039 C = 0.003125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3017.619489 B = 6930.762724 C = 8959.223655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.424 6.424 3 C 0.056 3.944 4 C 0.053 3.947 5 O -0.391 6.391 6 C 0.186 3.814 7 H 0.104 0.896 8 C -0.154 4.154 9 C 0.162 3.838 10 N -0.308 5.308 11 N -0.368 5.368 12 C 0.389 3.611 13 N -0.453 5.453 14 C 0.211 3.789 15 C -0.555 4.555 16 H 0.046 0.954 17 C 0.030 3.970 18 N -0.912 5.912 19 Si 0.939 3.061 20 H -0.287 1.287 21 H -0.265 1.265 22 H -0.277 1.277 23 C 0.119 3.881 24 C -0.158 4.158 25 C -0.157 4.157 26 C -0.173 4.173 27 N -0.475 5.475 28 C 0.071 3.929 29 H 0.064 0.936 30 H 0.046 0.954 31 H 0.078 0.922 32 H 0.097 0.903 33 H 0.058 0.942 34 H 0.058 0.942 35 H 0.107 0.893 36 H 0.051 0.949 37 H 0.101 0.899 38 H 0.078 0.922 39 H 0.044 0.956 40 H 0.017 0.983 41 H 0.268 0.732 42 H 0.034 0.966 43 H 0.065 0.935 44 H 0.096 0.904 45 H 0.095 0.905 46 H 0.110 0.890 47 H 0.106 0.894 48 H 0.092 0.908 49 H 0.111 0.889 50 H 0.106 0.894 51 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.720 17.576 4.677 18.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.344 6.344 3 C -0.020 4.020 4 C -0.023 4.023 5 O -0.309 6.309 6 C 0.126 3.874 7 H 0.121 0.879 8 C -0.213 4.213 9 C -0.108 4.108 10 N -0.147 5.147 11 N -0.213 5.213 12 C 0.031 3.969 13 N -0.176 5.176 14 C 0.086 3.914 15 C -0.594 4.594 16 H 0.064 0.936 17 C -0.171 4.171 18 N -0.552 5.552 19 Si 0.765 3.235 20 H -0.212 1.212 21 H -0.190 1.190 22 H -0.203 1.203 23 C -0.009 4.009 24 C -0.176 4.176 25 C -0.194 4.194 26 C -0.210 4.210 27 N -0.170 5.170 28 C -0.070 4.070 29 H 0.083 0.917 30 H 0.065 0.935 31 H 0.096 0.904 32 H 0.115 0.885 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.125 0.875 36 H 0.070 0.930 37 H 0.120 0.880 38 H 0.096 0.904 39 H 0.062 0.938 40 H 0.035 0.965 41 H 0.077 0.923 42 H 0.052 0.948 43 H 0.083 0.917 44 H 0.114 0.886 45 H 0.113 0.887 46 H 0.128 0.872 47 H 0.124 0.876 48 H 0.111 0.889 49 H 0.129 0.871 50 H 0.125 0.875 51 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 3.282 17.373 3.624 18.048 hybrid contribution -1.280 -0.934 0.874 1.809 sum 2.002 16.439 4.498 17.161 Atomic orbital electron populations 1.22859 0.79849 1.03059 1.01103 1.87982 1.21329 1.29485 1.95615 1.22804 0.92237 0.84665 1.02256 1.22958 0.93983 0.99259 0.86054 1.88120 1.20781 1.82521 1.39510 1.20221 0.83000 0.87912 0.96289 0.87859 1.22173 1.01194 0.95943 1.01946 1.24953 0.93186 0.95523 0.97109 1.73734 1.21921 1.09134 1.09936 1.74557 1.09504 1.08688 1.28542 1.22633 0.93609 0.93218 0.87442 1.59330 1.46431 1.01945 1.09915 1.19614 0.93400 0.88045 0.90334 1.21906 0.99468 1.15238 1.22831 0.93612 1.25452 1.01076 0.95781 0.94755 1.69976 1.38175 1.20683 1.26322 0.85798 0.81352 0.78327 0.78032 1.21243 1.18969 1.20304 1.21307 0.97336 0.96699 0.85517 1.22046 0.98949 1.01763 0.94867 1.23072 0.94941 0.99522 1.01858 1.23018 1.02625 0.98709 0.96676 1.46119 1.32708 1.18122 1.20009 1.22374 0.94308 1.05561 0.84776 0.91715 0.93498 0.90386 0.88477 0.92417 0.92353 0.87498 0.92959 0.88005 0.90358 0.93838 0.96469 0.92324 0.94755 0.91666 0.88588 0.88660 0.87188 0.87562 0.88948 0.87058 0.87544 0.89884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.59 11.01 113.37 1.25 1.84 16 2 O -0.42 -12.55 10.67 -144.35 -1.54 -14.09 16 3 C 0.06 1.15 6.32 71.98 0.45 1.60 16 4 C 0.05 1.06 6.13 71.98 0.44 1.51 16 5 O -0.39 -11.92 9.94 -144.35 -1.43 -13.36 16 6 C 0.19 4.94 3.14 29.85 0.09 5.04 16 7 H 0.10 2.02 6.73 -2.39 -0.02 2.00 16 8 C -0.15 -3.04 9.51 71.98 0.68 -2.36 16 9 C 0.16 6.20 6.95 137.64 0.96 7.16 16 10 N -0.31 -14.69 12.18 -49.54 -0.60 -15.30 16 11 N -0.37 -18.80 10.93 -58.01 -0.63 -19.44 16 12 C 0.39 17.93 5.84 260.11 1.52 19.44 16 13 N -0.45 -20.33 4.67 -710.34 -3.32 -23.65 16 14 C 0.21 10.83 4.82 85.55 0.41 11.24 16 15 C -0.56 -32.36 7.52 25.60 0.19 -32.17 16 16 H 0.05 2.89 6.35 -2.91 -0.02 2.87 16 17 C 0.03 1.75 5.46 84.65 0.46 2.21 16 18 N -0.91 -53.32 13.29 21.45 0.28 -53.04 16 19 Si 0.94 47.50 29.54 68.60 2.03 49.53 16 20 H -0.29 -15.27 7.11 99.48 0.71 -14.56 16 21 H -0.26 -12.59 7.11 99.48 0.71 -11.88 16 22 H -0.28 -13.68 7.11 99.48 0.71 -12.97 16 23 C 0.12 5.08 4.58 86.30 0.40 5.47 16 24 C -0.16 -5.59 5.71 -10.79 -0.06 -5.65 16 25 C -0.16 -4.25 10.18 30.62 0.31 -3.93 16 26 C -0.17 -5.04 10.25 30.62 0.31 -4.72 16 27 N -0.47 -18.11 3.21 -538.19 -1.73 -19.83 16 28 C 0.07 1.88 10.90 127.77 1.39 3.28 16 29 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 32 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 34 H 0.06 1.14 8.09 -2.38 -0.02 1.13 16 35 H 0.11 1.20 7.87 -2.39 -0.02 1.18 16 36 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 37 H 0.10 1.24 7.87 -2.38 -0.02 1.23 16 38 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 39 H 0.04 2.32 6.65 -2.38 -0.02 2.31 16 40 H 0.02 0.92 6.53 -2.39 -0.02 0.90 16 41 H 0.27 14.75 8.31 -92.71 -0.77 13.98 16 42 H 0.03 1.71 6.46 -2.39 -0.02 1.70 16 43 H 0.06 2.71 7.56 -2.39 -0.02 2.70 16 44 H 0.10 3.69 6.79 -2.39 -0.02 3.67 16 45 H 0.09 2.47 8.03 -2.39 -0.02 2.45 16 46 H 0.11 2.50 8.14 -2.39 -0.02 2.48 16 47 H 0.11 2.76 8.14 -2.38 -0.02 2.74 16 48 H 0.09 2.67 8.14 -2.39 -0.02 2.65 16 49 H 0.11 2.12 8.14 -2.39 -0.02 2.10 16 50 H 0.11 2.18 7.32 -2.39 -0.02 2.17 16 51 H 0.08 2.53 6.38 -2.39 -0.02 2.51 16 Total: -1.00 -82.04 414.54 2.79 -79.26 By element: Atomic # 1 Polarization: 19.03 SS G_CDS: 0.91 Total: 19.95 kcal Atomic # 6 Polarization: 1.15 SS G_CDS: 8.82 Total: 9.96 kcal Atomic # 7 Polarization: -125.25 SS G_CDS: -6.00 Total: -131.25 kcal Atomic # 8 Polarization: -24.47 SS G_CDS: -2.97 Total: -27.45 kcal Atomic # 14 Polarization: 47.50 SS G_CDS: 2.03 Total: 49.53 kcal Total: -82.04 2.79 -79.26 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000349806962.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.674 kcal (2) G-P(sol) polarization free energy of solvation -82.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.258 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.83 seconds