Wall clock time and date at job start Tue Mar 31 2020 20:40:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50696 * 120.00109 * 2 1 4 4 N 1.46491 * 109.47418 * 124.99634 * 3 2 1 5 5 C 1.34778 * 120.00226 * 180.02562 * 4 3 2 6 6 O 1.21284 * 119.99744 * 359.97438 * 5 4 3 7 7 C 1.50704 * 120.00231 * 180.02562 * 5 4 3 8 8 N 1.46903 * 109.46904 * 179.97438 * 7 5 4 9 9 C 1.46902 * 110.99519 * 169.99594 * 8 7 5 10 10 C 1.53245 * 109.33740 * 187.25130 * 9 8 7 11 11 N 1.47082 * 108.51942 * 306.17196 * 10 9 8 12 12 C 1.34774 * 120.87811 * 231.18165 * 11 10 9 13 13 O 1.21284 * 120.00306 * 0.02562 * 12 11 10 14 14 C 1.50708 * 119.99974 * 180.02562 * 12 11 10 15 15 H 1.09001 * 109.46724 * 40.00439 * 14 12 11 16 16 N 1.46898 * 109.47125 * 160.00093 * 14 12 11 17 17 C 1.52996 * 109.47139 * 280.00620 * 14 12 11 18 18 C 1.52997 * 109.46947 * 174.99712 * 17 14 12 19 19 C 1.50706 * 109.47238 * 179.97438 * 18 17 14 20 20 H 1.07999 * 119.99515 * 0.02562 * 19 18 17 21 21 C 1.37870 * 120.00176 * 180.02562 * 19 18 17 22 22 N 1.31520 * 119.99883 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00043 * 180.02562 * 21 19 18 24 24 H 1.48494 * 109.47288 * 59.99994 * 23 21 19 25 25 H 1.48503 * 109.47086 * 179.97438 * 23 21 19 26 26 H 1.48505 * 109.46819 * 299.99648 * 23 21 19 27 27 C 1.47079 * 118.23910 * 51.46139 * 11 10 9 28 28 C 1.46895 * 110.99873 * 294.29639 * 8 7 5 29 29 H 1.08002 * 119.99859 * 179.97438 * 1 2 3 30 30 H 1.08001 * 120.00023 * 0.02562 * 1 2 3 31 31 H 1.07999 * 119.99500 * 179.97438 * 2 1 3 32 32 H 1.08996 * 109.47082 * 4.98810 * 3 2 1 33 33 H 1.09006 * 109.46601 * 244.99740 * 3 2 1 34 34 H 0.97003 * 120.00496 * 0.02562 * 4 3 2 35 35 H 1.09003 * 109.47262 * 59.99550 * 7 5 4 36 36 H 1.08999 * 109.46806 * 299.99283 * 7 5 4 37 37 H 1.09002 * 109.48926 * 67.29489 * 9 8 7 38 38 H 1.08990 * 109.49598 * 307.20942 * 9 8 7 39 39 H 1.08991 * 109.62675 * 186.46151 * 10 9 8 40 40 H 1.08996 * 109.62712 * 65.88084 * 10 9 8 41 41 H 1.00899 * 111.00442 * 296.05363 * 16 14 12 42 42 H 1.00906 * 110.99610 * 60.00093 * 16 14 12 43 43 H 1.09001 * 109.47372 * 55.00021 * 17 14 12 44 44 H 1.09004 * 109.47108 * 294.99766 * 17 14 12 45 45 H 1.09001 * 109.46832 * 59.99979 * 18 17 14 46 46 H 1.09000 * 109.47611 * 300.00276 * 18 17 14 47 47 H 0.97004 * 119.99507 * 180.02562 * 22 21 19 48 48 H 1.08995 * 109.63105 * 68.24569 * 27 11 10 49 49 H 1.08997 * 109.63104 * 188.83219 * 27 11 10 50 50 H 1.08995 * 109.49726 * 292.70925 * 28 8 7 51 51 H 1.08996 * 109.49578 * 52.78860 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3319 1.1314 5 6 3.7782 2.4091 1.3334 6 8 3.7144 3.3559 0.5782 7 6 4.7355 2.4365 2.4970 8 7 5.4699 3.7088 2.4970 9 6 6.2354 3.8747 3.7398 10 6 6.8378 5.2832 3.7805 11 7 7.6046 5.4993 2.5441 12 6 8.8772 5.9408 2.5878 13 8 9.4051 6.1650 3.6564 14 6 9.6445 6.1559 1.3085 15 1 8.9868 6.5988 0.5606 16 7 10.7756 7.0582 1.5618 17 6 10.1682 4.8129 0.7959 18 6 10.8389 5.0128 -0.5645 19 6 11.3554 3.6900 -1.0692 20 1 11.2184 2.7961 -0.4788 21 6 12.0026 3.6209 -2.2846 22 7 12.1698 4.7096 -3.0033 23 14 12.6421 1.9812 -2.9105 24 1 11.5106 1.0301 -3.0522 25 1 13.2933 2.1753 -4.2309 26 1 13.6305 1.4347 -1.9461 27 6 6.9438 5.2267 1.2588 28 6 6.3391 3.8148 1.3175 29 1 -0.5400 -0.9353 -0.0004 30 1 -0.5400 0.9353 -0.0004 31 1 1.8499 -0.9353 0.0004 32 1 1.3586 2.1316 0.0894 33 1 2.6214 1.4024 -0.9314 34 1 3.0451 0.5745 1.7352 35 1 5.4408 1.6102 2.4069 36 1 4.1781 2.3384 3.4285 37 1 7.0358 3.1356 3.7753 38 1 5.5743 3.7370 4.5953 39 1 7.4991 5.3737 4.6421 40 1 6.0388 6.0213 3.8495 41 1 10.4533 7.9730 1.8399 42 1 11.4004 6.6697 2.2524 43 1 9.3376 4.1146 0.6924 44 1 10.8940 4.4119 1.5035 45 1 11.6695 5.7110 -0.4610 46 1 10.1132 5.4138 -1.2721 47 1 12.6249 4.6610 -3.8586 48 1 6.1547 5.9594 1.0901 49 1 7.6752 5.2799 0.4524 50 1 7.1380 3.0766 1.3869 51 1 5.7533 3.6337 0.4164 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424134515.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:40:47 Heat of formation + Delta-G solvation = -39.791497 kcal Electronic energy + Delta-G solvation = -29914.952786 eV Core-core repulsion = 25849.869268 eV Total energy + Delta-G solvation = -4065.083518 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.52342 -39.83914 -37.93549 -36.12041 -35.27180 -34.54282 -33.18675 -32.79262 -31.24442 -30.07255 -29.54653 -27.11056 -26.22592 -24.78700 -24.00972 -23.13211 -21.18210 -21.02726 -20.27569 -20.22588 -18.68787 -17.44544 -17.31795 -16.68506 -16.34401 -16.04523 -15.78536 -15.46351 -15.37867 -15.23088 -14.94687 -14.65180 -14.40860 -14.32094 -13.94856 -13.80366 -13.49251 -13.28430 -13.10533 -12.72512 -12.32329 -12.30091 -12.09413 -11.98639 -11.65089 -11.53597 -11.41852 -11.34905 -11.26915 -10.87143 -10.64249 -10.54234 -10.32112 -10.01545 -9.89187 -9.77560 -9.37242 -9.34479 -9.00016 -8.79399 -8.41407 -8.32171 -8.16605 -5.92487 -3.94706 1.57434 2.39575 2.78204 2.84462 3.09744 3.35830 3.40647 3.42597 3.72526 4.28235 4.47087 4.50090 4.59343 4.62824 4.75283 4.87079 4.90563 4.94923 5.06885 5.11385 5.16211 5.28627 5.31703 5.33001 5.37233 5.41268 5.43203 5.58249 5.63842 5.75852 5.83246 5.86275 5.99233 6.00299 6.02191 6.21092 6.42672 6.51479 6.59346 6.68433 6.79175 7.09516 7.17570 7.40342 7.57402 7.77010 7.83642 7.97362 7.97511 8.14821 8.31952 8.49458 9.12845 9.68137 11.18367 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.008045 B = 0.002987 C = 0.002293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3479.381187 B = 9372.034046 C =12207.925954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.177 4.177 3 C 0.147 3.853 4 N -0.733 5.733 5 C 0.513 3.487 6 O -0.515 6.515 7 C 0.037 3.963 8 N -0.521 5.521 9 C 0.043 3.957 10 C 0.116 3.884 11 N -0.614 5.614 12 C 0.486 3.514 13 O -0.558 6.558 14 C 0.077 3.923 15 H 0.098 0.902 16 N -0.807 5.807 17 C -0.095 4.095 18 C 0.032 3.968 19 C -0.522 4.522 20 H 0.050 0.950 21 C 0.059 3.941 22 N -0.892 5.892 23 Si 0.888 3.112 24 H -0.278 1.278 25 H -0.287 1.287 26 H -0.278 1.278 27 C 0.111 3.889 28 C 0.036 3.964 29 H 0.103 0.897 30 H 0.100 0.900 31 H 0.116 0.884 32 H 0.072 0.928 33 H 0.077 0.923 34 H 0.400 0.600 35 H 0.066 0.934 36 H 0.104 0.896 37 H 0.041 0.959 38 H 0.085 0.915 39 H 0.093 0.907 40 H 0.072 0.928 41 H 0.334 0.666 42 H 0.347 0.653 43 H 0.052 0.948 44 H 0.052 0.948 45 H 0.035 0.965 46 H 0.013 0.987 47 H 0.260 0.740 48 H 0.078 0.922 49 H 0.102 0.898 50 H 0.041 0.959 51 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.098 -7.136 12.168 27.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.195 4.195 3 C 0.024 3.976 4 N -0.387 5.387 5 C 0.299 3.701 6 O -0.389 6.389 7 C -0.095 4.095 8 N -0.246 5.246 9 C -0.085 4.085 10 C -0.008 4.008 11 N -0.348 5.348 12 C 0.274 3.726 13 O -0.436 6.436 14 C -0.039 4.039 15 H 0.116 0.884 16 N -0.334 5.334 17 C -0.134 4.134 18 C -0.005 4.005 19 C -0.560 4.560 20 H 0.068 0.932 21 C -0.143 4.143 22 N -0.531 5.531 23 Si 0.716 3.284 24 H -0.204 1.204 25 H -0.213 1.213 26 H -0.204 1.204 27 C -0.012 4.012 28 C -0.092 4.092 29 H 0.121 0.879 30 H 0.119 0.881 31 H 0.133 0.867 32 H 0.090 0.910 33 H 0.095 0.905 34 H 0.234 0.766 35 H 0.084 0.916 36 H 0.122 0.878 37 H 0.060 0.940 38 H 0.104 0.896 39 H 0.112 0.888 40 H 0.090 0.910 41 H 0.145 0.855 42 H 0.161 0.839 43 H 0.071 0.929 44 H 0.071 0.929 45 H 0.054 0.946 46 H 0.031 0.969 47 H 0.070 0.930 48 H 0.096 0.904 49 H 0.120 0.880 50 H 0.059 0.941 51 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -22.896 -5.948 11.191 26.170 hybrid contribution 0.378 -2.122 0.896 2.335 sum -22.518 -8.071 12.088 26.802 Atomic orbital electron populations 1.23994 0.95796 1.02454 0.98167 1.23021 0.96252 0.98167 1.02055 1.20395 0.91809 0.95476 0.89936 1.45978 1.41556 1.20077 1.31075 1.20581 0.80982 0.82151 0.86426 1.90714 1.66964 1.34742 1.46515 1.21940 0.96657 0.92849 0.98011 1.61639 1.28669 1.31490 1.02807 1.22515 0.96410 0.97526 0.92083 1.21601 0.95282 0.95423 0.88458 1.48338 1.12813 1.66315 1.07324 1.22750 0.81106 0.75209 0.93562 1.90620 1.68440 1.52436 1.32088 1.21858 0.91986 0.98006 0.92011 0.88375 1.59017 1.16581 1.04845 1.52991 1.21684 0.99580 0.90944 1.01160 1.19008 0.96130 0.96961 0.88391 1.21216 1.36773 0.94349 1.03706 0.93165 1.24982 0.96203 0.96132 0.96950 1.69966 1.42764 1.27281 1.13069 0.86727 0.79107 0.84502 0.78030 1.20417 1.21309 1.20360 1.22028 0.97527 0.96111 0.85498 1.22760 0.95075 0.96952 0.94390 0.87876 0.88131 0.86650 0.91015 0.90463 0.76584 0.91636 0.87766 0.94048 0.89636 0.88846 0.91003 0.85453 0.83918 0.92902 0.92936 0.94640 0.96851 0.93034 0.90411 0.87958 0.94078 0.87651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.76 14.32 29.01 0.42 -0.34 16 2 C -0.18 -0.91 9.63 -36.03 -0.35 -1.25 16 3 C 0.15 1.06 6.11 -5.20 -0.03 1.02 16 4 N -0.73 -5.12 5.55 -61.48 -0.34 -5.46 16 5 C 0.51 5.10 7.49 -10.98 -0.08 5.02 16 6 O -0.52 -7.27 14.33 5.55 0.08 -7.19 16 7 C 0.04 0.30 5.45 -4.97 -0.03 0.27 16 8 N -0.52 -5.68 4.37 -235.46 -1.03 -6.71 16 9 C 0.04 0.43 5.62 -3.70 -0.02 0.41 16 10 C 0.12 1.39 6.60 -3.60 -0.02 1.37 16 11 N -0.61 -8.74 3.00 -172.18 -0.52 -9.26 16 12 C 0.49 8.17 6.95 -10.98 -0.08 8.10 16 13 O -0.56 -10.63 15.70 5.55 0.09 -10.55 16 14 C 0.08 1.36 2.29 -68.86 -0.16 1.20 16 15 H 0.10 1.66 6.85 -51.93 -0.36 1.31 16 16 N -0.81 -14.16 8.44 -5.65 -0.05 -14.21 16 17 C -0.10 -1.97 4.45 -26.73 -0.12 -2.09 16 18 C 0.03 0.83 4.86 -27.88 -0.14 0.69 16 19 C -0.52 -14.79 9.11 -34.44 -0.31 -15.10 16 20 H 0.05 1.38 7.74 -52.49 -0.41 0.98 16 21 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 22 N -0.89 -27.00 13.29 55.43 0.74 -26.26 16 23 Si 0.89 21.81 29.54 -169.99 -5.02 16.79 16 24 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 25 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 26 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 27 C 0.11 1.50 6.00 -3.36 -0.02 1.48 16 28 C 0.04 0.46 5.27 -3.46 -0.02 0.45 16 29 H 0.10 0.35 8.06 -52.49 -0.42 -0.07 16 30 H 0.10 0.44 7.84 -52.49 -0.41 0.03 16 31 H 0.12 0.48 8.06 -52.49 -0.42 0.06 16 32 H 0.07 0.57 7.79 -51.93 -0.40 0.16 16 33 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.40 1.65 8.46 -40.82 -0.35 1.31 16 35 H 0.07 0.48 8.12 -51.93 -0.42 0.05 16 36 H 0.10 0.59 7.97 -51.93 -0.41 0.18 16 37 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.09 0.64 7.99 -51.93 -0.41 0.22 16 39 H 0.09 1.20 7.06 -51.93 -0.37 0.83 16 40 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.33 5.13 9.06 -39.29 -0.36 4.78 16 42 H 0.35 6.15 8.58 -39.29 -0.34 5.82 16 43 H 0.05 1.04 6.95 -51.93 -0.36 0.68 16 44 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 45 H 0.04 0.99 7.75 -51.93 -0.40 0.59 16 46 H 0.01 0.36 8.14 -51.93 -0.42 -0.07 16 47 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 48 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 49 H 0.10 1.48 4.86 -51.93 -0.25 1.22 16 50 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 51 H 0.11 1.46 5.76 -51.93 -0.30 1.16 16 LS Contribution 409.37 15.07 6.17 6.17 Total: -1.00 -35.20 409.37 -9.43 -44.63 By element: Atomic # 1 Polarization: 17.73 SS G_CDS: -8.49 Total: 9.24 kcal Atomic # 6 Polarization: 3.88 SS G_CDS: -1.06 Total: 2.82 kcal Atomic # 7 Polarization: -60.71 SS G_CDS: -1.20 Total: -61.91 kcal Atomic # 8 Polarization: -17.91 SS G_CDS: 0.17 Total: -17.74 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -35.20 -9.43 -44.63 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424134515.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.841 kcal (2) G-P(sol) polarization free energy of solvation -35.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds