Wall clock time and date at job start Tue Mar 31 2020 20:40:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50696 * 120.00109 * 2 1 4 4 N 1.46491 * 109.47418 * 124.99634 * 3 2 1 5 5 C 1.34778 * 120.00226 * 180.02562 * 4 3 2 6 6 O 1.21284 * 119.99744 * 359.97438 * 5 4 3 7 7 C 1.50704 * 120.00231 * 180.02562 * 5 4 3 8 8 N 1.46903 * 109.46904 * 179.97438 * 7 5 4 9 9 C 1.46902 * 110.99519 * 169.99594 * 8 7 5 10 10 C 1.53245 * 109.33740 * 187.25130 * 9 8 7 11 11 N 1.47082 * 108.51942 * 306.17196 * 10 9 8 12 12 C 1.34774 * 120.87811 * 231.18165 * 11 10 9 13 13 O 1.21284 * 120.00306 * 0.02562 * 12 11 10 14 14 C 1.50708 * 119.99974 * 180.02562 * 12 11 10 15 15 H 1.09001 * 109.46724 * 40.00439 * 14 12 11 16 16 N 1.46898 * 109.47125 * 160.00093 * 14 12 11 17 17 C 1.52996 * 109.47139 * 280.00620 * 14 12 11 18 18 C 1.52997 * 109.46947 * 174.99712 * 17 14 12 19 19 C 1.50706 * 109.47238 * 179.97438 * 18 17 14 20 20 H 1.07999 * 119.99515 * 0.02562 * 19 18 17 21 21 C 1.37870 * 120.00176 * 180.02562 * 19 18 17 22 22 N 1.31520 * 119.99883 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00043 * 180.02562 * 21 19 18 24 24 H 1.48494 * 109.47288 * 59.99994 * 23 21 19 25 25 H 1.48503 * 109.47086 * 179.97438 * 23 21 19 26 26 H 1.48505 * 109.46819 * 299.99648 * 23 21 19 27 27 C 1.47079 * 118.23910 * 51.46139 * 11 10 9 28 28 C 1.46895 * 110.99873 * 294.29639 * 8 7 5 29 29 H 1.08002 * 119.99859 * 179.97438 * 1 2 3 30 30 H 1.08001 * 120.00023 * 0.02562 * 1 2 3 31 31 H 1.07999 * 119.99500 * 179.97438 * 2 1 3 32 32 H 1.08996 * 109.47082 * 4.98810 * 3 2 1 33 33 H 1.09006 * 109.46601 * 244.99740 * 3 2 1 34 34 H 0.97003 * 120.00496 * 0.02562 * 4 3 2 35 35 H 1.09003 * 109.47262 * 59.99550 * 7 5 4 36 36 H 1.08999 * 109.46806 * 299.99283 * 7 5 4 37 37 H 1.09002 * 109.48926 * 67.29489 * 9 8 7 38 38 H 1.08990 * 109.49598 * 307.20942 * 9 8 7 39 39 H 1.08991 * 109.62675 * 186.46151 * 10 9 8 40 40 H 1.08996 * 109.62712 * 65.88084 * 10 9 8 41 41 H 1.00899 * 111.00442 * 296.05363 * 16 14 12 42 42 H 1.00906 * 110.99610 * 60.00093 * 16 14 12 43 43 H 1.09001 * 109.47372 * 55.00021 * 17 14 12 44 44 H 1.09004 * 109.47108 * 294.99766 * 17 14 12 45 45 H 1.09001 * 109.46832 * 59.99979 * 18 17 14 46 46 H 1.09000 * 109.47611 * 300.00276 * 18 17 14 47 47 H 0.97004 * 119.99507 * 180.02562 * 22 21 19 48 48 H 1.08995 * 109.63105 * 68.24569 * 27 11 10 49 49 H 1.08997 * 109.63104 * 188.83219 * 27 11 10 50 50 H 1.08995 * 109.49726 * 292.70925 * 28 8 7 51 51 H 1.08996 * 109.49578 * 52.78860 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3319 1.1314 5 6 3.7782 2.4091 1.3334 6 8 3.7144 3.3559 0.5782 7 6 4.7355 2.4365 2.4970 8 7 5.4699 3.7088 2.4970 9 6 6.2354 3.8747 3.7398 10 6 6.8378 5.2832 3.7805 11 7 7.6046 5.4993 2.5441 12 6 8.8772 5.9408 2.5878 13 8 9.4051 6.1650 3.6564 14 6 9.6445 6.1559 1.3085 15 1 8.9868 6.5988 0.5606 16 7 10.7756 7.0582 1.5618 17 6 10.1682 4.8129 0.7959 18 6 10.8389 5.0128 -0.5645 19 6 11.3554 3.6900 -1.0692 20 1 11.2184 2.7961 -0.4788 21 6 12.0026 3.6209 -2.2846 22 7 12.1698 4.7096 -3.0033 23 14 12.6421 1.9812 -2.9105 24 1 11.5106 1.0301 -3.0522 25 1 13.2933 2.1753 -4.2309 26 1 13.6305 1.4347 -1.9461 27 6 6.9438 5.2267 1.2588 28 6 6.3391 3.8148 1.3175 29 1 -0.5400 -0.9353 -0.0004 30 1 -0.5400 0.9353 -0.0004 31 1 1.8499 -0.9353 0.0004 32 1 1.3586 2.1316 0.0894 33 1 2.6214 1.4024 -0.9314 34 1 3.0451 0.5745 1.7352 35 1 5.4408 1.6102 2.4069 36 1 4.1781 2.3384 3.4285 37 1 7.0358 3.1356 3.7753 38 1 5.5743 3.7370 4.5953 39 1 7.4991 5.3737 4.6421 40 1 6.0388 6.0213 3.8495 41 1 10.4533 7.9730 1.8399 42 1 11.4004 6.6697 2.2524 43 1 9.3376 4.1146 0.6924 44 1 10.8940 4.4119 1.5035 45 1 11.6695 5.7110 -0.4610 46 1 10.1132 5.4138 -1.2721 47 1 12.6249 4.6610 -3.8586 48 1 6.1547 5.9594 1.0901 49 1 7.6752 5.2799 0.4524 50 1 7.1380 3.0766 1.3869 51 1 5.7533 3.6337 0.4164 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424134515.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:40:45 Heat of formation + Delta-G solvation = -67.811660 kcal Electronic energy + Delta-G solvation = -29916.167831 eV Core-core repulsion = 25849.869268 eV Total energy + Delta-G solvation = -4066.298563 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.61131 -40.79528 -38.94767 -36.91608 -36.75992 -35.59585 -34.83710 -33.74816 -32.24084 -31.94032 -30.42198 -28.37394 -27.46009 -25.90277 -25.14002 -24.49772 -22.52119 -21.82535 -21.66755 -20.77260 -19.91054 -18.71609 -18.29687 -18.07228 -17.40150 -17.21311 -16.90555 -16.75389 -16.45501 -16.30634 -16.05519 -15.78187 -15.56598 -15.30946 -15.16462 -14.91896 -14.41536 -14.29431 -14.21942 -13.99802 -13.77014 -13.52115 -13.40820 -13.18346 -12.89770 -12.78805 -12.54561 -12.46452 -12.34146 -12.27032 -12.18071 -12.03213 -11.74214 -11.63864 -11.24617 -11.00274 -10.98160 -10.49629 -10.49166 -10.04661 -9.83889 -9.64437 -9.33912 -8.13797 -6.24351 1.17312 1.40147 1.43542 1.44071 1.51394 1.65866 1.88799 2.24830 2.43904 2.92232 3.18995 3.39576 3.61979 3.77002 3.83700 3.89020 3.96856 4.04604 4.12708 4.16383 4.20595 4.24242 4.28325 4.42615 4.44421 4.52306 4.58396 4.68428 4.71762 4.77110 4.81472 4.83180 4.90025 4.99620 5.00182 5.21707 5.38530 5.42745 5.55634 5.64864 5.78058 5.79098 5.82347 5.91655 5.97312 6.06336 6.27597 6.29921 6.49103 6.59952 6.93329 7.00664 7.30283 7.43497 8.97309 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.008045 B = 0.002987 C = 0.002293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3479.381187 B = 9372.034046 C =12207.925954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.181 4.181 3 C 0.147 3.853 4 N -0.718 5.718 5 C 0.508 3.492 6 O -0.565 6.565 7 C 0.038 3.962 8 N -0.530 5.530 9 C 0.050 3.950 10 C 0.111 3.889 11 N -0.607 5.607 12 C 0.490 3.510 13 O -0.580 6.580 14 C 0.084 3.916 15 H 0.104 0.896 16 N -0.817 5.817 17 C -0.079 4.079 18 C 0.042 3.958 19 C -0.543 4.543 20 H 0.055 0.945 21 C 0.002 3.998 22 N -0.929 5.929 23 Si 0.959 3.041 24 H -0.266 1.266 25 H -0.284 1.284 26 H -0.270 1.270 27 C 0.112 3.888 28 C 0.045 3.955 29 H 0.119 0.881 30 H 0.099 0.901 31 H 0.128 0.872 32 H 0.061 0.939 33 H 0.059 0.941 34 H 0.417 0.583 35 H 0.081 0.919 36 H 0.139 0.861 37 H 0.035 0.965 38 H 0.121 0.879 39 H 0.087 0.913 40 H 0.083 0.917 41 H 0.346 0.654 42 H 0.346 0.654 43 H 0.062 0.938 44 H 0.042 0.958 45 H 0.006 0.994 46 H -0.007 1.007 47 H 0.262 0.738 48 H 0.084 0.916 49 H 0.088 0.912 50 H 0.030 0.970 51 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.674 -9.392 13.589 29.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.200 4.200 3 C 0.023 3.977 4 N -0.372 5.372 5 C 0.295 3.705 6 O -0.443 6.443 7 C -0.092 4.092 8 N -0.255 5.255 9 C -0.078 4.078 10 C -0.011 4.011 11 N -0.339 5.339 12 C 0.277 3.723 13 O -0.461 6.461 14 C -0.032 4.032 15 H 0.122 0.878 16 N -0.346 5.346 17 C -0.117 4.117 18 C 0.005 3.995 19 C -0.581 4.581 20 H 0.073 0.927 21 C -0.196 4.196 22 N -0.569 5.569 23 Si 0.784 3.216 24 H -0.191 1.191 25 H -0.209 1.209 26 H -0.195 1.195 27 C -0.011 4.011 28 C -0.083 4.083 29 H 0.137 0.863 30 H 0.117 0.883 31 H 0.146 0.854 32 H 0.079 0.921 33 H 0.077 0.923 34 H 0.254 0.746 35 H 0.099 0.901 36 H 0.157 0.843 37 H 0.053 0.947 38 H 0.139 0.861 39 H 0.105 0.895 40 H 0.101 0.899 41 H 0.160 0.840 42 H 0.159 0.841 43 H 0.080 0.920 44 H 0.061 0.939 45 H 0.025 0.975 46 H 0.011 0.989 47 H 0.071 0.929 48 H 0.102 0.898 49 H 0.106 0.894 50 H 0.049 0.951 51 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -24.525 -8.255 12.646 28.802 hybrid contribution 0.768 -1.407 0.446 1.664 sum -23.757 -9.662 13.092 28.795 Atomic orbital electron populations 1.24168 0.95662 1.03204 0.96796 1.22949 0.96380 0.97414 1.03226 1.20353 0.91557 0.96507 0.89262 1.45883 1.40468 1.19861 1.30966 1.20986 0.81173 0.81966 0.86384 1.90698 1.68597 1.36699 1.48307 1.22064 0.96509 0.91919 0.98707 1.61593 1.28194 1.33452 1.02238 1.22516 0.96806 0.95661 0.92789 1.21812 0.95128 0.97345 0.86853 1.48353 1.12123 1.64864 1.08597 1.22340 0.81907 0.75537 0.92514 1.90610 1.69213 1.53792 1.32492 1.21633 0.92201 0.96433 0.92916 0.87819 1.58988 1.16802 1.05598 1.53204 1.21382 0.99223 0.92988 0.98090 1.18801 0.94816 0.95315 0.90601 1.21653 1.36898 0.95385 1.04140 0.92698 1.25903 0.96392 1.00077 0.97216 1.70106 1.43593 1.29712 1.13514 0.85600 0.78804 0.79788 0.77436 1.19088 1.20905 1.19516 1.22027 0.97227 0.97088 0.84729 1.22556 0.94781 0.95811 0.95197 0.86273 0.88271 0.85370 0.92075 0.92253 0.74645 0.90139 0.84316 0.94695 0.86107 0.89507 0.89888 0.84038 0.84080 0.91951 0.93881 0.97538 0.98909 0.92913 0.89752 0.89356 0.95136 0.88860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.17 14.32 67.78 0.97 -0.20 16 2 C -0.18 -1.57 9.63 25.64 0.25 -1.33 16 3 C 0.15 2.03 6.11 85.63 0.52 2.56 16 4 N -0.72 -8.95 5.55 -466.80 -2.59 -11.54 16 5 C 0.51 9.47 7.49 87.66 0.66 10.13 16 6 O -0.56 -15.99 14.33 -3.04 -0.04 -16.04 16 7 C 0.04 0.52 5.45 85.56 0.47 0.99 16 8 N -0.53 -10.47 4.37 -898.87 -3.93 -14.40 16 9 C 0.05 0.87 5.62 86.38 0.49 1.35 16 10 C 0.11 2.46 6.60 86.35 0.57 3.03 16 11 N -0.61 -16.80 3.00 -817.04 -2.45 -19.26 16 12 C 0.49 16.33 6.95 87.66 0.61 16.94 16 13 O -0.58 -21.91 15.70 -3.04 -0.05 -21.96 16 14 C 0.08 2.99 2.29 44.17 0.10 3.09 16 15 H 0.10 3.58 6.85 -2.39 -0.02 3.56 16 16 N -0.82 -29.18 8.44 -171.80 -1.45 -30.63 16 17 C -0.08 -3.29 4.45 30.59 0.14 -3.16 16 18 C 0.04 2.22 4.86 29.85 0.15 2.37 16 19 C -0.54 -31.15 9.11 25.60 0.23 -30.91 16 20 H 0.05 3.03 7.74 -2.91 -0.02 3.00 16 21 C 0.00 0.12 5.46 84.65 0.46 0.58 16 22 N -0.93 -57.29 13.29 21.45 0.28 -57.01 16 23 Si 0.96 44.72 29.54 68.60 2.03 46.74 16 24 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 25 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 26 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 27 C 0.11 2.99 6.00 86.51 0.52 3.51 16 28 C 0.05 1.13 5.27 86.54 0.46 1.59 16 29 H 0.12 0.51 8.06 -2.91 -0.02 0.48 16 30 H 0.10 0.74 7.84 -2.91 -0.02 0.72 16 31 H 0.13 0.79 8.06 -2.91 -0.02 0.77 16 32 H 0.06 0.98 7.79 -2.39 -0.02 0.96 16 33 H 0.06 1.04 8.14 -2.38 -0.02 1.02 16 34 H 0.42 2.38 8.46 -92.71 -0.78 1.60 16 35 H 0.08 0.92 8.12 -2.39 -0.02 0.90 16 36 H 0.14 0.95 7.97 -2.39 -0.02 0.94 16 37 H 0.03 0.67 8.14 -2.39 -0.02 0.65 16 38 H 0.12 1.28 7.99 -2.39 -0.02 1.26 16 39 H 0.09 2.09 7.06 -2.39 -0.02 2.07 16 40 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 41 H 0.35 10.72 9.06 -89.69 -0.81 9.91 16 42 H 0.35 12.48 8.58 -89.69 -0.77 11.71 16 43 H 0.06 2.47 6.95 -2.39 -0.02 2.46 16 44 H 0.04 1.87 8.14 -2.38 -0.02 1.85 16 45 H 0.01 0.36 7.75 -2.39 -0.02 0.34 16 46 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 47 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16 48 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 49 H 0.09 2.60 4.86 -2.39 -0.01 2.59 16 50 H 0.03 0.82 8.14 -2.39 -0.02 0.80 16 51 H 0.09 2.62 5.76 -2.39 -0.01 2.61 16 Total: -1.00 -77.31 409.37 -3.04 -80.34 By element: Atomic # 1 Polarization: 34.62 SS G_CDS: -1.42 Total: 33.20 kcal Atomic # 6 Polarization: 3.96 SS G_CDS: 6.58 Total: 10.54 kcal Atomic # 7 Polarization: -122.69 SS G_CDS: -10.14 Total: -132.83 kcal Atomic # 8 Polarization: -37.91 SS G_CDS: -0.09 Total: -38.00 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.74 kcal Total: -77.31 -3.04 -80.34 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424134515.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.533 kcal (2) G-P(sol) polarization free energy of solvation -77.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds