Wall clock time and date at job start Tue Mar 31 2020 22:17:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42895 * 113.99997 * 2 1 4 4 C 1.53002 * 109.47033 * 180.02562 * 3 2 1 5 5 O 1.42897 * 109.47174 * 64.99896 * 4 3 2 6 6 C 1.42906 * 113.99712 * 180.02562 * 5 4 3 7 7 H 1.08997 * 109.46916 * 29.99952 * 6 5 4 8 8 C 1.52995 * 109.47073 * 269.99727 * 6 5 4 9 9 C 1.50702 * 109.46926 * 150.00033 * 6 5 4 10 10 N 1.30297 * 126.35121 * 45.14694 * 9 6 5 11 11 N 1.28523 * 110.05303 * 180.31412 * 10 9 6 12 12 C 1.31212 * 109.86284 * 359.71899 * 11 10 9 13 13 N 1.38580 * 126.47555 * 180.02562 * 12 11 10 14 14 C 1.46848 * 110.99777 * 124.17505 * 13 12 11 15 15 C 1.53040 * 109.52265 * 174.16465 * 14 13 12 16 16 C 1.53123 * 109.27969 * 59.17722 * 15 14 13 17 17 C 1.50697 * 109.52195 * 182.44125 * 16 15 14 18 18 H 1.08001 * 119.99735 * 119.68480 * 17 16 15 19 19 C 1.37874 * 119.99867 * 299.68202 * 17 16 15 20 20 N 1.31522 * 119.99859 * 180.02562 * 19 17 16 21 21 Si 1.86799 * 120.00238 * 359.97438 * 19 17 16 22 22 H 1.48507 * 109.46781 * 90.00279 * 21 19 17 23 23 H 1.48505 * 109.47138 * 209.99723 * 21 19 17 24 24 H 1.48493 * 109.47120 * 330.00305 * 21 19 17 25 25 C 1.53120 * 109.15818 * 302.34911 * 16 15 14 26 26 C 1.46850 * 110.99696 * 359.96701 * 13 12 11 27 27 N 1.36458 * 107.05509 * 0.02562 * 12 11 10 28 28 C 1.46499 * 127.13868 * 180.02562 * 27 12 11 29 29 H 1.09006 * 109.47225 * 300.00016 * 1 2 3 30 30 H 1.08992 * 109.47193 * 60.00195 * 1 2 3 31 31 H 1.09004 * 109.47263 * 180.02562 * 1 2 3 32 32 H 1.09006 * 109.47346 * 59.99765 * 3 2 1 33 33 H 1.08996 * 109.47143 * 299.99918 * 3 2 1 34 34 H 1.08999 * 109.46957 * 304.99269 * 4 3 2 35 35 H 1.09004 * 109.46712 * 184.99777 * 4 3 2 36 36 H 1.09002 * 109.47251 * 180.02562 * 8 6 5 37 37 H 1.09003 * 109.47185 * 300.00592 * 8 6 5 38 38 H 1.08999 * 109.47192 * 60.00020 * 8 6 5 39 39 H 1.09002 * 109.46144 * 294.17670 * 14 13 12 40 40 H 1.08996 * 109.46445 * 54.14812 * 14 13 12 41 41 H 1.09001 * 109.50347 * 299.24098 * 15 14 13 42 42 H 1.09003 * 109.50541 * 179.11523 * 15 14 13 43 43 H 1.09000 * 109.52102 * 62.24653 * 16 15 14 44 44 H 0.96999 * 120.00161 * 180.02562 * 20 19 17 45 45 H 1.09007 * 109.50081 * 297.70761 * 25 16 15 46 46 H 1.08999 * 109.49973 * 177.59400 * 25 16 15 47 47 H 1.09001 * 109.45901 * 305.85066 * 26 13 12 48 48 H 1.08995 * 109.46150 * 65.82540 * 26 13 12 49 49 H 1.09002 * 109.47391 * 89.99255 * 28 27 12 50 50 H 1.09001 * 109.46813 * 329.99312 * 28 27 12 51 51 H 1.09004 * 109.47041 * 209.99439 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 8 3.9648 0.5796 -1.2219 6 6 5.3812 0.4191 -1.3245 7 1 5.8042 0.2819 -0.3294 8 6 5.9902 1.6651 -1.9704 9 6 5.6898 -0.7880 -2.1723 10 7 5.1280 -1.0997 -3.3059 11 7 5.6234 -2.1967 -3.7564 12 6 6.5396 -2.6443 -2.9306 13 7 7.2908 -3.7991 -3.0810 14 6 8.7280 -3.5018 -3.0334 15 6 9.5219 -4.8100 -3.0561 16 6 9.1839 -5.5844 -4.3331 17 6 9.9169 -6.9011 -4.3326 18 1 9.3628 -7.8276 -4.3639 19 6 11.2949 -6.9229 -4.2921 20 7 11.9347 -8.0720 -4.2921 21 14 12.2532 -5.3203 -4.2387 22 1 12.4658 -4.9176 -2.8252 23 1 13.5681 -5.5075 -4.9031 24 1 11.4878 -4.2620 -4.9452 25 6 7.6748 -5.8389 -4.3819 26 6 6.9344 -4.5009 -4.3208 27 7 6.6129 -1.7581 -1.8956 28 6 7.4945 -1.8328 -0.7280 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 1.6886 1.8464 0.8900 33 1 1.6886 1.8463 -0.8900 34 1 3.8514 0.5682 0.8410 35 1 3.9785 2.1765 0.0889 36 1 7.0704 1.5425 -2.0490 37 1 5.5670 1.8023 -2.9655 38 1 5.7669 2.5382 -1.3572 39 1 9.0023 -2.8956 -3.8967 40 1 8.9556 -2.9548 -2.1185 41 1 9.2583 -5.4109 -2.1857 42 1 10.5890 -4.5886 -3.0366 43 1 9.4830 -5.0002 -5.2033 44 1 12.9041 -8.0873 -4.2633 45 1 7.3821 -6.4559 -3.5323 46 1 7.4222 -6.3524 -5.3095 47 1 5.8593 -4.6794 -4.3409 48 1 7.2172 -3.8899 -5.1780 49 1 8.4305 -1.3184 -0.9458 50 1 7.7000 -2.8774 -0.4942 51 1 7.0090 -1.3583 0.1248 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000548917901.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:17:23 Heat of formation + Delta-G solvation = -17.241789 kcal Electronic energy + Delta-G solvation = -30315.856631 eV Core-core repulsion = 26251.750942 eV Total energy + Delta-G solvation = -4064.105689 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -44.09398 -40.25213 -39.60001 -38.36540 -36.28815 -35.83007 -33.96610 -33.11133 -31.97840 -30.70639 -29.93508 -28.68587 -27.57880 -27.17243 -25.33715 -24.36472 -23.80049 -23.47392 -22.21142 -21.57743 -20.57774 -18.83257 -18.64069 -18.04804 -17.63455 -17.55868 -17.19488 -16.88196 -16.52419 -16.25457 -15.96132 -15.75811 -15.62305 -15.30649 -14.95858 -14.86968 -14.29734 -14.17325 -14.13695 -13.92908 -13.71056 -13.54605 -13.32965 -13.27235 -13.02360 -12.86137 -12.67845 -12.52313 -12.27235 -12.18405 -12.08885 -11.94152 -11.76320 -11.66608 -11.44450 -11.21431 -11.06017 -10.99890 -10.84472 -10.69903 -10.63926 -10.60354 -9.31337 -8.27434 -6.31533 0.64836 1.08620 1.28523 1.37731 1.46941 1.74018 2.33577 2.49820 2.72139 2.89191 3.06821 3.25338 3.59954 3.71073 3.77953 3.90327 4.00361 4.05649 4.13956 4.15796 4.25511 4.27638 4.28661 4.39118 4.42679 4.42802 4.46270 4.52511 4.55970 4.57772 4.60777 4.64112 4.70975 4.79598 4.81017 4.82903 4.85459 4.89710 4.91415 5.03625 5.15962 5.24258 5.42946 5.49695 5.64855 5.67531 5.74786 6.09773 6.18301 6.30318 6.33264 6.75216 7.33382 7.71539 8.89486 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.022663 B = 0.002384 C = 0.002274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1235.203700 B =11741.905892 C =12309.654478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.420 6.420 3 C 0.056 3.944 4 C 0.054 3.946 5 O -0.388 6.388 6 C 0.185 3.815 7 H 0.111 0.889 8 C -0.160 4.160 9 C 0.172 3.828 10 N -0.301 5.301 11 N -0.364 5.364 12 C 0.364 3.636 13 N -0.446 5.446 14 C 0.059 3.941 15 C -0.111 4.111 16 C 0.009 3.991 17 C -0.514 4.514 18 H 0.034 0.966 19 C 0.009 3.991 20 N -0.950 5.950 21 Si 0.947 3.053 22 H -0.254 1.254 23 H -0.302 1.302 24 H -0.250 1.250 25 C -0.090 4.090 26 C 0.085 3.915 27 N -0.477 5.477 28 C 0.057 3.943 29 H 0.060 0.940 30 H 0.044 0.956 31 H 0.084 0.916 32 H 0.094 0.906 33 H 0.055 0.945 34 H 0.065 0.935 35 H 0.102 0.898 36 H 0.076 0.924 37 H 0.050 0.950 38 H 0.100 0.900 39 H 0.039 0.961 40 H 0.104 0.896 41 H 0.071 0.929 42 H 0.053 0.947 43 H 0.020 0.980 44 H 0.265 0.735 45 H 0.060 0.940 46 H 0.068 0.932 47 H 0.083 0.917 48 H 0.043 0.957 49 H 0.105 0.895 50 H 0.097 0.903 51 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.480 26.405 15.561 33.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.340 6.340 3 C -0.020 4.020 4 C -0.021 4.021 5 O -0.307 6.307 6 C 0.125 3.875 7 H 0.129 0.871 8 C -0.219 4.219 9 C -0.097 4.097 10 N -0.140 5.140 11 N -0.209 5.209 12 C 0.006 3.994 13 N -0.170 5.170 14 C -0.068 4.068 15 C -0.148 4.148 16 C -0.010 4.010 17 C -0.552 4.552 18 H 0.052 0.948 19 C -0.187 4.187 20 N -0.591 5.591 21 Si 0.774 3.226 22 H -0.180 1.180 23 H -0.230 1.230 24 H -0.174 1.174 25 C -0.128 4.128 26 C -0.042 4.042 27 N -0.173 5.173 28 C -0.084 4.084 29 H 0.079 0.921 30 H 0.063 0.937 31 H 0.102 0.898 32 H 0.112 0.888 33 H 0.074 0.926 34 H 0.083 0.917 35 H 0.120 0.880 36 H 0.095 0.905 37 H 0.070 0.930 38 H 0.118 0.882 39 H 0.057 0.943 40 H 0.122 0.878 41 H 0.090 0.910 42 H 0.071 0.929 43 H 0.038 0.962 44 H 0.074 0.926 45 H 0.079 0.921 46 H 0.086 0.914 47 H 0.101 0.899 48 H 0.061 0.939 49 H 0.123 0.877 50 H 0.116 0.884 51 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -15.330 25.844 14.630 33.421 hybrid contribution 1.525 0.145 0.219 1.548 sum -13.805 25.989 14.849 32.962 Atomic orbital electron populations 1.22867 0.79805 1.03321 1.00912 1.87937 1.21267 1.29185 1.95610 1.22783 0.92312 0.84812 1.02130 1.22942 0.93814 0.99284 0.86098 1.88118 1.20490 1.82410 1.39641 1.20225 0.83195 0.87591 0.96522 0.87145 1.22215 1.01199 0.96417 1.02032 1.24980 0.92663 0.94999 0.97061 1.73855 1.22566 1.07965 1.09655 1.74585 1.14048 1.07870 1.24419 1.22870 0.98586 0.90126 0.87794 1.58707 1.05443 1.14137 1.38717 1.22443 0.83492 0.98450 1.02370 1.21899 0.97460 0.94670 1.00802 1.19192 0.93647 0.94366 0.93768 1.21290 0.91618 0.92589 1.49735 0.94796 1.25920 0.98931 0.99565 0.94329 1.70060 1.08713 1.27561 1.52748 0.85870 0.77056 0.80454 0.79265 1.17976 1.22988 1.17382 1.21455 0.94775 0.94724 1.01863 1.21995 1.00688 0.94467 0.87020 1.46165 1.32394 1.18695 1.20079 1.22631 0.94190 1.06383 0.85185 0.92124 0.93723 0.89752 0.88773 0.92643 0.91697 0.87998 0.90535 0.93049 0.88175 0.94285 0.87756 0.91006 0.92885 0.96163 0.92614 0.92082 0.91369 0.89894 0.93862 0.87712 0.88436 0.86024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 11.01 113.37 1.25 1.62 16 2 O -0.42 -8.71 10.67 -144.34 -1.54 -10.25 16 3 C 0.06 0.74 6.32 71.98 0.45 1.19 16 4 C 0.05 0.66 6.13 71.98 0.44 1.10 16 5 O -0.39 -8.27 9.94 -144.34 -1.43 -9.71 16 6 C 0.18 3.21 3.13 29.85 0.09 3.30 16 7 H 0.11 1.06 6.59 -2.39 -0.02 1.04 16 8 C -0.16 -2.14 9.51 71.98 0.68 -1.45 16 9 C 0.17 4.69 6.95 137.64 0.96 5.64 16 10 N -0.30 -10.99 12.18 -49.53 -0.60 -11.59 16 11 N -0.36 -14.04 11.24 -58.00 -0.65 -14.70 16 12 C 0.36 12.09 7.22 260.11 1.88 13.97 16 13 N -0.45 -14.92 4.70 -706.15 -3.32 -18.24 16 14 C 0.06 1.84 5.28 86.33 0.46 2.29 16 15 C -0.11 -4.25 4.84 30.65 0.15 -4.10 16 16 C 0.01 0.41 1.75 -11.46 -0.02 0.39 16 17 C -0.51 -28.71 9.14 25.60 0.23 -28.48 16 18 H 0.03 2.11 7.99 -2.91 -0.02 2.09 16 19 C 0.01 0.53 5.45 84.65 0.46 0.99 16 20 N -0.95 -58.72 13.96 21.45 0.30 -58.42 16 21 Si 0.95 43.03 24.37 68.60 1.67 44.70 16 22 H -0.25 -10.51 6.89 99.48 0.69 -9.83 16 23 H -0.30 -13.94 7.11 99.48 0.71 -13.24 16 24 H -0.25 -10.58 6.53 99.48 0.65 -9.93 16 25 C -0.09 -3.58 5.32 30.65 0.16 -3.42 16 26 C 0.08 3.05 4.88 86.32 0.42 3.47 16 27 N -0.48 -12.09 3.21 -538.17 -1.73 -13.81 16 28 C 0.06 0.79 9.25 127.77 1.18 1.98 16 29 H 0.06 0.55 8.14 -2.38 -0.02 0.53 16 30 H 0.04 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.09 0.63 8.14 -2.38 -0.02 0.61 16 33 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 34 H 0.06 0.69 8.08 -2.39 -0.02 0.67 16 35 H 0.10 0.49 7.87 -2.38 -0.02 0.47 16 36 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 37 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 38 H 0.10 0.69 7.87 -2.39 -0.02 0.67 16 39 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 40 H 0.10 2.50 5.20 -2.39 -0.01 2.48 16 41 H 0.07 2.79 8.14 -2.39 -0.02 2.77 16 42 H 0.05 2.08 3.38 -2.39 -0.01 2.07 16 43 H 0.02 0.94 7.19 -2.39 -0.02 0.92 16 44 H 0.26 15.33 8.31 -92.71 -0.77 14.56 16 45 H 0.06 2.47 8.14 -2.38 -0.02 2.45 16 46 H 0.07 2.68 8.14 -2.39 -0.02 2.66 16 47 H 0.08 2.95 7.92 -2.39 -0.02 2.94 16 48 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 49 H 0.10 1.01 7.75 -2.39 -0.02 0.99 16 50 H 0.10 1.49 7.64 -2.39 -0.02 1.48 16 51 H 0.12 0.87 7.10 -2.38 -0.02 0.86 16 Total: -1.00 -81.53 397.56 2.33 -79.20 By element: Atomic # 1 Polarization: 13.48 SS G_CDS: 0.83 Total: 14.32 kcal Atomic # 6 Polarization: -10.30 SS G_CDS: 8.80 Total: -1.50 kcal Atomic # 7 Polarization: -110.76 SS G_CDS: -6.00 Total: -116.76 kcal Atomic # 8 Polarization: -16.98 SS G_CDS: -2.97 Total: -19.96 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 1.67 Total: 44.70 kcal Total: -81.53 2.33 -79.20 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000548917901.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.961 kcal (2) G-P(sol) polarization free energy of solvation -81.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds