Wall clock time and date at job start Tue Mar 31 2020 22:46:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42898 * 114.00404 * 2 1 4 4 C 1.53000 * 109.47724 * 179.97438 * 3 2 1 5 5 O 1.42897 * 109.46739 * 64.99459 * 4 3 2 6 6 C 1.42900 * 114.00047 * 180.02562 * 5 4 3 7 7 H 1.09008 * 109.47211 * 330.00410 * 6 5 4 8 8 C 1.52999 * 109.47179 * 89.99991 * 6 5 4 9 9 C 1.50701 * 109.47453 * 210.00403 * 6 5 4 10 10 N 1.30296 * 126.34646 * 315.02313 * 9 6 5 11 11 N 1.28529 * 110.05263 * 179.97438 * 10 9 6 12 12 C 1.31222 * 109.85937 * 0.02562 * 11 10 9 13 13 N 1.38584 * 126.47155 * 179.97438 * 12 11 10 14 14 C 1.46900 * 110.99971 * 294.04430 * 13 12 11 15 15 C 1.46906 * 110.99657 * 57.99264 * 13 12 11 16 16 H 1.09001 * 109.47281 * 299.99770 * 15 13 12 17 17 C 1.52995 * 109.46950 * 60.00183 * 15 13 12 18 18 C 1.50700 * 109.46746 * 180.02562 * 15 13 12 19 19 H 1.08002 * 120.00382 * 359.97438 * 18 15 13 20 20 C 1.37875 * 119.99603 * 180.02562 * 18 15 13 21 21 N 1.31507 * 120.00630 * 359.97438 * 20 18 15 22 22 Si 1.86806 * 119.99919 * 179.97438 * 20 18 15 23 23 H 1.48504 * 109.46934 * 59.99966 * 22 20 18 24 24 H 1.48497 * 109.47300 * 179.97438 * 22 20 18 25 25 H 1.48499 * 109.47033 * 300.00157 * 22 20 18 26 26 N 1.36456 * 107.05329 * 359.73537 * 12 11 10 27 27 C 1.46495 * 127.13439 * 180.26456 * 26 12 11 28 28 C 1.53007 * 117.49969 * 14.86833 * 27 26 12 29 29 C 1.52998 * 117.50077 * 306.20818 * 27 26 12 30 30 H 1.09003 * 109.47027 * 60.00467 * 1 2 3 31 31 H 1.08995 * 109.47554 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47275 * 300.00597 * 1 2 3 33 33 H 1.09000 * 109.47225 * 59.99610 * 3 2 1 34 34 H 1.09006 * 109.46967 * 299.99750 * 3 2 1 35 35 H 1.08996 * 109.47531 * 184.99650 * 4 3 2 36 36 H 1.09001 * 109.46976 * 305.00116 * 4 3 2 37 37 H 1.08998 * 109.46979 * 300.00622 * 8 6 5 38 38 H 1.09004 * 109.46998 * 60.00522 * 8 6 5 39 39 H 1.08999 * 109.47298 * 180.02562 * 8 6 5 40 40 H 1.08994 * 109.47875 * 65.57319 * 14 13 12 41 41 H 1.09008 * 109.47033 * 185.58011 * 14 13 12 42 42 H 1.09006 * 109.46710 * 305.57514 * 14 13 12 43 43 H 1.09001 * 109.46859 * 180.02562 * 17 15 13 44 44 H 1.09002 * 109.47563 * 299.99494 * 17 15 13 45 45 H 1.09001 * 109.47466 * 59.99700 * 17 15 13 46 46 H 0.96999 * 120.00835 * 179.97438 * 21 20 18 47 47 H 1.08993 * 115.55387 * 160.53922 * 27 26 12 48 48 H 1.08993 * 117.49710 * 0.02562 * 28 27 26 49 49 H 1.09002 * 117.49243 * 145.02106 * 28 27 26 50 50 H 1.09000 * 117.50610 * 214.97747 * 29 27 26 51 51 H 1.08997 * 117.49867 * 359.97438 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 8 3.9658 0.5791 -1.2201 6 6 5.3821 0.4185 -1.3216 7 1 5.8787 1.2102 -0.7604 8 6 5.7836 -0.9419 -0.7480 9 6 5.7939 0.4948 -2.7692 10 7 5.2085 -0.0982 -3.7709 11 7 5.8190 0.1818 -4.8667 12 6 6.8353 0.9745 -4.6208 13 7 7.7246 1.4868 -5.5521 14 6 8.5295 0.4163 -6.1556 15 6 7.0198 2.2605 -6.5830 16 1 6.3076 1.6156 -7.0978 17 6 6.2731 3.4233 -5.9264 18 6 8.0171 2.7998 -7.5758 19 1 9.0692 2.5893 -7.4530 20 6 7.5863 3.5629 -8.6402 21 7 6.3052 3.8197 -8.7895 22 14 8.8225 4.2320 -9.8705 23 1 9.5469 3.1033 -10.5081 24 1 8.1101 5.0140 -10.9127 25 1 9.7932 5.1101 -9.1692 26 7 6.8478 1.2036 -3.2757 27 6 7.7956 2.0342 -2.5288 28 6 8.6735 2.9984 -3.3294 29 6 9.2864 1.7406 -2.7084 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3634 0.5139 0.8899 33 1 1.6886 1.8464 0.8899 34 1 1.6887 1.8463 -0.8901 35 1 3.9785 2.1765 0.0901 36 1 3.8508 0.5685 0.8427 37 1 5.4857 -0.9970 0.2990 38 1 5.2871 -1.7336 -1.3092 39 1 6.8639 -1.0642 -0.8250 40 1 7.8830 -0.2403 -6.7377 41 1 9.2853 0.8538 -6.8081 42 1 9.0177 -0.1588 -5.3688 43 1 5.7497 3.9970 -6.6913 44 1 5.5517 3.0329 -5.2085 45 1 6.9853 4.0681 -5.4116 46 1 6.0022 4.3568 -9.5382 47 1 7.4618 2.3581 -1.5431 48 1 8.5455 3.0149 -4.4116 49 1 8.9173 3.9564 -2.8700 50 1 9.9334 1.8717 -1.8410 51 1 9.5620 0.9292 -3.3819 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000584727186.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:46:35 Heat of formation + Delta-G solvation = 42.350283 kcal Electronic energy + Delta-G solvation = -31129.292906 eV Core-core repulsion = 27067.771323 eV Total energy + Delta-G solvation = -4061.521583 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.54374 -38.77549 -37.63004 -37.42381 -36.75997 -33.07685 -32.72831 -31.88965 -29.87760 -29.41007 -28.54400 -26.45770 -25.68163 -24.47039 -23.92738 -23.43940 -22.71698 -22.27782 -21.31691 -20.15710 -19.23556 -17.15241 -17.05500 -16.88200 -16.44697 -15.86327 -15.69320 -15.55662 -15.32626 -14.96672 -14.62737 -14.54899 -14.37767 -13.80110 -13.55964 -13.25862 -12.82566 -12.64407 -12.44326 -12.32847 -12.22122 -11.88523 -11.74454 -11.55172 -11.47200 -11.28658 -11.15431 -11.11458 -11.08805 -10.90304 -10.79327 -10.46973 -10.34290 -10.27176 -10.10996 -9.93080 -9.88898 -9.80315 -9.25680 -9.09311 -8.53190 -8.44063 -7.67610 -6.08291 -4.15774 2.06901 2.50581 3.27985 3.29716 3.33520 3.35177 3.56177 3.63664 3.88324 4.27642 4.37031 4.50624 4.57351 4.77543 4.80572 4.86596 4.93175 4.98324 5.01633 5.09822 5.14728 5.21214 5.23893 5.26970 5.45026 5.50628 5.52475 5.58751 5.63826 5.65573 5.81773 5.93481 6.08113 6.11371 6.19354 6.31381 6.46084 6.59565 6.68706 6.78199 6.92345 6.92548 6.96608 7.07014 7.17556 7.38020 7.65189 7.72457 7.89139 8.16954 8.42409 8.87624 9.29951 9.49359 10.98438 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.015108 B = 0.003003 C = 0.002745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1852.890471 B = 9321.109573 C =10198.536238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.381 6.381 3 C 0.064 3.936 4 C 0.061 3.939 5 O -0.353 6.353 6 C 0.190 3.810 7 H 0.070 0.930 8 C -0.164 4.164 9 C 0.153 3.847 10 N -0.260 5.260 11 N -0.319 5.319 12 C 0.385 3.615 13 N -0.469 5.469 14 C 0.048 3.952 15 C 0.224 3.776 16 H 0.022 0.978 17 C -0.131 4.131 18 C -0.513 4.513 19 H 0.066 0.934 20 C 0.064 3.936 21 N -0.887 5.887 22 Si 0.901 3.099 23 H -0.276 1.276 24 H -0.287 1.287 25 H -0.276 1.276 26 N -0.438 5.438 27 C 0.047 3.953 28 C -0.168 4.168 29 C -0.172 4.172 30 H 0.043 0.957 31 H 0.086 0.914 32 H 0.038 0.962 33 H 0.063 0.937 34 H 0.060 0.940 35 H 0.064 0.936 36 H 0.060 0.940 37 H 0.066 0.934 38 H 0.077 0.923 39 H 0.065 0.935 40 H 0.036 0.964 41 H 0.091 0.909 42 H 0.042 0.958 43 H 0.091 0.909 44 H 0.002 0.998 45 H 0.034 0.966 46 H 0.264 0.736 47 H 0.132 0.868 48 H 0.155 0.845 49 H 0.099 0.901 50 H 0.101 0.899 51 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.954 -2.858 20.911 21.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.300 6.300 3 C -0.013 4.013 4 C -0.016 4.016 5 O -0.270 6.270 6 C 0.130 3.870 7 H 0.088 0.912 8 C -0.222 4.222 9 C -0.115 4.115 10 N -0.101 5.101 11 N -0.163 5.163 12 C 0.030 3.970 13 N -0.197 5.197 14 C -0.100 4.100 15 C 0.120 3.880 16 H 0.040 0.960 17 C -0.189 4.189 18 C -0.552 4.552 19 H 0.084 0.916 20 C -0.139 4.139 21 N -0.524 5.524 22 Si 0.728 3.272 23 H -0.202 1.202 24 H -0.213 1.213 25 H -0.202 1.202 26 N -0.131 5.131 27 C -0.058 4.058 28 C -0.206 4.206 29 C -0.210 4.210 30 H 0.061 0.939 31 H 0.104 0.896 32 H 0.056 0.944 33 H 0.081 0.919 34 H 0.079 0.921 35 H 0.082 0.918 36 H 0.078 0.922 37 H 0.085 0.915 38 H 0.096 0.904 39 H 0.084 0.916 40 H 0.055 0.945 41 H 0.109 0.891 42 H 0.061 0.939 43 H 0.110 0.890 44 H 0.021 0.979 45 H 0.053 0.947 46 H 0.074 0.926 47 H 0.150 0.850 48 H 0.172 0.828 49 H 0.117 0.883 50 H 0.119 0.881 51 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -1.798 -3.510 20.094 20.477 hybrid contribution 0.897 1.186 -0.078 1.489 sum -0.901 -2.324 20.017 20.171 Atomic orbital electron populations 1.22738 0.81129 1.02845 0.99807 1.87967 1.19533 1.27128 1.95353 1.22533 0.92170 0.85661 1.00939 1.22614 0.93738 0.97292 0.87914 1.88164 1.19865 1.81442 1.37547 1.19818 0.82820 0.98001 0.86404 0.91193 1.22202 1.01805 0.97023 1.01158 1.24023 0.90612 0.99061 0.97757 1.74005 1.21969 1.19803 0.94295 1.74771 1.06554 1.16299 1.18630 1.22848 0.95053 0.95984 0.83129 1.59412 1.21377 1.22046 1.16830 1.22241 0.97537 0.92197 0.98014 1.19444 0.92751 0.90104 0.85729 0.95983 1.21837 0.98122 0.99640 0.99311 1.20993 0.93384 1.32860 1.07957 0.91555 1.24909 0.95306 0.95969 0.97683 1.69888 1.13541 1.38504 1.30504 0.86524 0.80975 0.79025 0.80656 1.20186 1.21312 1.20186 1.45721 1.23661 1.36458 1.07248 1.21823 0.86648 1.00229 0.97066 1.23979 0.98470 0.93120 1.04997 1.23342 0.92569 1.01623 1.03482 0.93883 0.89587 0.94385 0.91874 0.92133 0.91804 0.92214 0.91527 0.90445 0.91576 0.94502 0.89073 0.93901 0.89024 0.97919 0.94734 0.92646 0.85033 0.82763 0.88286 0.88073 0.88091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 11.01 101.05 1.11 1.39 16 2 O -0.38 -4.63 10.67 -40.09 -0.43 -5.05 16 3 C 0.06 0.64 6.32 37.16 0.23 0.87 16 4 C 0.06 0.63 6.13 37.16 0.23 0.85 16 5 O -0.35 -5.20 9.94 -40.09 -0.40 -5.60 16 6 C 0.19 2.56 3.14 -27.88 -0.09 2.47 16 7 H 0.07 0.73 6.64 -51.92 -0.34 0.39 16 8 C -0.16 -1.87 9.51 37.16 0.35 -1.51 16 9 C 0.15 2.76 6.95 -154.02 -1.07 1.69 16 10 N -0.26 -5.73 12.18 32.99 0.40 -5.33 16 11 N -0.32 -7.57 12.10 30.32 0.37 -7.21 16 12 C 0.38 8.17 4.81 -318.86 -1.53 6.64 16 13 N -0.47 -9.97 2.01 -176.07 -0.35 -10.33 16 14 C 0.05 0.93 9.15 60.06 0.55 1.48 16 15 C 0.22 5.64 1.94 -68.86 -0.13 5.50 16 16 H 0.02 0.65 8.07 -51.93 -0.42 0.23 16 17 C -0.13 -3.26 8.63 37.16 0.32 -2.94 16 18 C -0.51 -13.32 7.95 -34.44 -0.27 -13.59 16 19 H 0.07 1.65 6.39 -52.49 -0.34 1.32 16 20 C 0.06 1.71 5.30 -17.82 -0.09 1.61 16 21 N -0.89 -24.96 11.32 55.43 0.63 -24.33 16 22 Si 0.90 20.56 29.54 -169.99 -5.02 15.54 16 23 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 24 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 25 H -0.28 -6.20 7.11 56.52 0.40 -5.79 16 26 N -0.44 -7.80 3.15 -107.01 -0.34 -8.13 16 27 C 0.05 0.65 6.68 -67.93 -0.45 0.19 16 28 C -0.17 -2.37 9.85 -26.69 -0.26 -2.64 16 29 C -0.17 -2.07 10.34 -26.69 -0.28 -2.35 16 30 H 0.04 0.37 8.14 -51.93 -0.42 -0.06 16 31 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 33 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 34 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.06 0.52 8.09 -51.93 -0.42 0.10 16 36 H 0.06 0.52 7.87 -51.93 -0.41 0.11 16 37 H 0.07 0.60 7.87 -51.93 -0.41 0.19 16 38 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 39 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 41 H 0.09 1.74 6.29 -51.92 -0.33 1.41 16 42 H 0.04 0.73 7.84 -51.93 -0.41 0.32 16 43 H 0.09 2.50 6.07 -51.93 -0.32 2.19 16 44 H 0.00 0.05 7.22 -51.93 -0.38 -0.33 16 45 H 0.03 0.80 7.25 -51.93 -0.38 0.42 16 46 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 47 H 0.13 1.37 7.18 -51.93 -0.37 1.00 16 48 H 0.15 2.81 4.43 -51.93 -0.23 2.58 16 49 H 0.10 1.16 8.14 -51.93 -0.42 0.73 16 50 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 51 H 0.10 1.38 7.88 -51.93 -0.41 0.97 16 LS Contribution 408.75 15.07 6.16 6.16 Total: -1.00 -33.21 408.75 -8.88 -42.09 By element: Atomic # 1 Polarization: 11.04 SS G_CDS: -8.51 Total: 2.53 kcal Atomic # 6 Polarization: 1.05 SS G_CDS: -1.39 Total: -0.34 kcal Atomic # 7 Polarization: -56.03 SS G_CDS: 0.70 Total: -55.33 kcal Atomic # 8 Polarization: -9.83 SS G_CDS: -0.83 Total: -10.65 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -33.21 -8.88 -42.09 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000584727186.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.441 kcal (2) G-P(sol) polarization free energy of solvation -33.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.091 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds