Wall clock time and date at job start Tue Mar 31 2020 22:46:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42898 * 114.00404 * 2 1 4 4 C 1.53000 * 109.47724 * 179.97438 * 3 2 1 5 5 O 1.42897 * 109.46739 * 64.99459 * 4 3 2 6 6 C 1.42900 * 114.00047 * 180.02562 * 5 4 3 7 7 H 1.09008 * 109.47211 * 330.00410 * 6 5 4 8 8 C 1.52999 * 109.47179 * 89.99991 * 6 5 4 9 9 C 1.50701 * 109.47453 * 210.00403 * 6 5 4 10 10 N 1.30296 * 126.34646 * 315.02313 * 9 6 5 11 11 N 1.28529 * 110.05263 * 179.97438 * 10 9 6 12 12 C 1.31222 * 109.85937 * 0.02562 * 11 10 9 13 13 N 1.38584 * 126.47155 * 179.97438 * 12 11 10 14 14 C 1.46900 * 110.99971 * 294.04430 * 13 12 11 15 15 C 1.46906 * 110.99657 * 57.99264 * 13 12 11 16 16 H 1.09001 * 109.47281 * 299.99770 * 15 13 12 17 17 C 1.52995 * 109.46950 * 60.00183 * 15 13 12 18 18 C 1.50700 * 109.46746 * 180.02562 * 15 13 12 19 19 H 1.08002 * 120.00382 * 359.97438 * 18 15 13 20 20 C 1.37875 * 119.99603 * 180.02562 * 18 15 13 21 21 N 1.31507 * 120.00630 * 359.97438 * 20 18 15 22 22 Si 1.86806 * 119.99919 * 179.97438 * 20 18 15 23 23 H 1.48504 * 109.46934 * 59.99966 * 22 20 18 24 24 H 1.48497 * 109.47300 * 179.97438 * 22 20 18 25 25 H 1.48499 * 109.47033 * 300.00157 * 22 20 18 26 26 N 1.36456 * 107.05329 * 359.73537 * 12 11 10 27 27 C 1.46495 * 127.13439 * 180.26456 * 26 12 11 28 28 C 1.53007 * 117.49969 * 14.86833 * 27 26 12 29 29 C 1.52998 * 117.50077 * 306.20818 * 27 26 12 30 30 H 1.09003 * 109.47027 * 60.00467 * 1 2 3 31 31 H 1.08995 * 109.47554 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47275 * 300.00597 * 1 2 3 33 33 H 1.09000 * 109.47225 * 59.99610 * 3 2 1 34 34 H 1.09006 * 109.46967 * 299.99750 * 3 2 1 35 35 H 1.08996 * 109.47531 * 184.99650 * 4 3 2 36 36 H 1.09001 * 109.46976 * 305.00116 * 4 3 2 37 37 H 1.08998 * 109.46979 * 300.00622 * 8 6 5 38 38 H 1.09004 * 109.46998 * 60.00522 * 8 6 5 39 39 H 1.08999 * 109.47298 * 180.02562 * 8 6 5 40 40 H 1.08994 * 109.47875 * 65.57319 * 14 13 12 41 41 H 1.09008 * 109.47033 * 185.58011 * 14 13 12 42 42 H 1.09006 * 109.46710 * 305.57514 * 14 13 12 43 43 H 1.09001 * 109.46859 * 180.02562 * 17 15 13 44 44 H 1.09002 * 109.47563 * 299.99494 * 17 15 13 45 45 H 1.09001 * 109.47466 * 59.99700 * 17 15 13 46 46 H 0.96999 * 120.00835 * 179.97438 * 21 20 18 47 47 H 1.08993 * 115.55387 * 160.53922 * 27 26 12 48 48 H 1.08993 * 117.49710 * 0.02562 * 28 27 26 49 49 H 1.09002 * 117.49243 * 145.02106 * 28 27 26 50 50 H 1.09000 * 117.50610 * 214.97747 * 29 27 26 51 51 H 1.08997 * 117.49867 * 359.97438 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 8 3.9658 0.5791 -1.2201 6 6 5.3821 0.4185 -1.3216 7 1 5.8787 1.2102 -0.7604 8 6 5.7836 -0.9419 -0.7480 9 6 5.7939 0.4948 -2.7692 10 7 5.2085 -0.0982 -3.7709 11 7 5.8190 0.1818 -4.8667 12 6 6.8353 0.9745 -4.6208 13 7 7.7246 1.4868 -5.5521 14 6 8.5295 0.4163 -6.1556 15 6 7.0198 2.2605 -6.5830 16 1 6.3076 1.6156 -7.0978 17 6 6.2731 3.4233 -5.9264 18 6 8.0171 2.7998 -7.5758 19 1 9.0692 2.5893 -7.4530 20 6 7.5863 3.5629 -8.6402 21 7 6.3052 3.8197 -8.7895 22 14 8.8225 4.2320 -9.8705 23 1 9.5469 3.1033 -10.5081 24 1 8.1101 5.0140 -10.9127 25 1 9.7932 5.1101 -9.1692 26 7 6.8478 1.2036 -3.2757 27 6 7.7956 2.0342 -2.5288 28 6 8.6735 2.9984 -3.3294 29 6 9.2864 1.7406 -2.7084 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3634 0.5139 0.8899 33 1 1.6886 1.8464 0.8899 34 1 1.6887 1.8463 -0.8901 35 1 3.9785 2.1765 0.0901 36 1 3.8508 0.5685 0.8427 37 1 5.4857 -0.9970 0.2990 38 1 5.2871 -1.7336 -1.3092 39 1 6.8639 -1.0642 -0.8250 40 1 7.8830 -0.2403 -6.7377 41 1 9.2853 0.8538 -6.8081 42 1 9.0177 -0.1588 -5.3688 43 1 5.7497 3.9970 -6.6913 44 1 5.5517 3.0329 -5.2085 45 1 6.9853 4.0681 -5.4116 46 1 6.0022 4.3568 -9.5382 47 1 7.4618 2.3581 -1.5431 48 1 8.5455 3.0149 -4.4116 49 1 8.9173 3.9564 -2.8700 50 1 9.9334 1.8717 -1.8410 51 1 9.5620 0.9292 -3.3819 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000584727186.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:46:34 Heat of formation + Delta-G solvation = 21.971961 kcal Electronic energy + Delta-G solvation = -31130.176576 eV Core-core repulsion = 27067.771323 eV Total energy + Delta-G solvation = -4062.405253 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -44.04998 -39.71053 -39.01635 -38.39909 -38.14164 -34.94188 -34.03834 -33.10358 -31.40771 -30.71978 -29.96534 -27.58643 -27.15417 -26.24377 -25.13217 -24.79000 -23.56884 -23.30511 -22.94765 -21.45509 -20.81489 -18.43190 -18.35843 -18.02211 -17.67460 -17.45123 -16.93683 -16.75749 -16.46699 -16.23397 -15.84549 -15.68287 -15.50524 -15.39722 -15.20439 -14.32569 -14.14482 -13.84162 -13.73276 -13.58496 -13.30502 -13.04208 -12.98542 -12.87282 -12.83080 -12.71328 -12.61012 -12.48332 -12.39996 -12.28175 -12.21621 -12.13512 -12.05877 -12.00143 -11.57779 -11.33425 -11.09491 -10.75059 -10.61766 -10.57515 -10.47703 -10.03719 -9.47435 -8.13937 -6.28895 0.63799 1.17866 1.46517 1.48484 1.55996 1.77107 2.41435 2.64146 2.84320 2.87277 2.91529 3.17193 3.22468 3.59518 3.71366 3.86618 4.01688 4.04026 4.07557 4.13943 4.22228 4.37860 4.43350 4.44887 4.52860 4.55552 4.58609 4.60793 4.67822 4.69474 4.74588 4.76689 4.83232 4.85682 4.86532 4.88027 4.95119 4.98712 5.03716 5.21641 5.23770 5.36093 5.52946 5.57560 5.64539 5.87340 5.94796 6.12624 6.14524 6.28724 6.59018 6.81822 7.40640 7.75028 8.93209 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.015108 B = 0.003003 C = 0.002745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1852.890471 B = 9321.109573 C =10198.536238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.412 6.412 3 C 0.058 3.942 4 C 0.054 3.946 5 O -0.391 6.391 6 C 0.188 3.812 7 H 0.112 0.888 8 C -0.156 4.156 9 C 0.173 3.827 10 N -0.311 5.311 11 N -0.368 5.368 12 C 0.368 3.632 13 N -0.451 5.451 14 C 0.050 3.950 15 C 0.236 3.764 16 H -0.034 1.034 17 C -0.108 4.108 18 C -0.519 4.519 19 H 0.078 0.922 20 C 0.013 3.987 21 N -0.923 5.923 22 Si 0.970 3.030 23 H -0.270 1.270 24 H -0.290 1.290 25 H -0.263 1.263 26 N -0.432 5.432 27 C 0.030 3.970 28 C -0.184 4.184 29 C -0.147 4.147 30 H 0.037 0.963 31 H 0.091 0.909 32 H 0.061 0.939 33 H 0.097 0.903 34 H 0.042 0.958 35 H 0.090 0.910 36 H 0.080 0.920 37 H 0.097 0.903 38 H 0.046 0.954 39 H 0.078 0.922 40 H 0.012 0.988 41 H 0.095 0.905 42 H 0.070 0.930 43 H 0.064 0.936 44 H -0.010 1.010 45 H 0.048 0.952 46 H 0.263 0.737 47 H 0.176 0.824 48 H 0.112 0.888 49 H 0.127 0.873 50 H 0.145 0.855 51 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.414 -1.699 24.419 24.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.332 6.332 3 C -0.019 4.019 4 C -0.022 4.022 5 O -0.309 6.309 6 C 0.128 3.872 7 H 0.130 0.870 8 C -0.215 4.215 9 C -0.096 4.096 10 N -0.151 5.151 11 N -0.212 5.212 12 C 0.011 3.989 13 N -0.177 5.177 14 C -0.097 4.097 15 C 0.130 3.870 16 H -0.017 1.017 17 C -0.167 4.167 18 C -0.557 4.557 19 H 0.096 0.904 20 C -0.187 4.187 21 N -0.562 5.562 22 Si 0.794 3.206 23 H -0.195 1.195 24 H -0.216 1.216 25 H -0.187 1.187 26 N -0.124 5.124 27 C -0.073 4.073 28 C -0.221 4.221 29 C -0.184 4.184 30 H 0.055 0.945 31 H 0.110 0.890 32 H 0.079 0.921 33 H 0.115 0.885 34 H 0.060 0.940 35 H 0.108 0.892 36 H 0.098 0.902 37 H 0.116 0.884 38 H 0.066 0.934 39 H 0.097 0.903 40 H 0.031 0.969 41 H 0.114 0.886 42 H 0.089 0.911 43 H 0.083 0.917 44 H 0.009 0.991 45 H 0.067 0.933 46 H 0.072 0.928 47 H 0.193 0.807 48 H 0.130 0.870 49 H 0.145 0.855 50 H 0.162 0.838 51 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 0.589 -2.357 23.636 23.761 hybrid contribution 0.086 0.795 -1.062 1.330 sum 0.676 -1.561 22.575 22.639 Atomic orbital electron populations 1.22885 0.79852 1.03602 1.00651 1.87917 1.21167 1.28558 1.95557 1.22725 0.92393 0.85068 1.01669 1.22941 0.93735 0.98776 0.86737 1.88128 1.20448 1.82233 1.40113 1.20204 0.83009 1.00492 0.83475 0.87026 1.22166 1.02252 0.94776 1.02270 1.25069 0.89033 0.96372 0.99147 1.73896 1.23737 1.22439 0.95013 1.74630 1.08073 1.18024 1.20470 1.22775 0.94997 0.96565 0.84559 1.59417 1.20493 1.22205 1.15587 1.22264 0.96929 0.91749 0.98754 1.19078 0.91885 0.89513 0.86508 1.01660 1.21563 0.97738 0.99337 0.98035 1.21270 0.93874 1.32466 1.08122 0.90423 1.25799 0.96987 0.96261 0.99612 1.70057 1.15650 1.39329 1.31173 0.85431 0.78608 0.78476 0.78041 1.19471 1.21607 1.18745 1.45929 1.24139 1.36266 1.06044 1.22511 0.86917 0.99830 0.98007 1.23875 1.00008 0.95387 1.02864 1.23417 0.91669 0.99346 1.04011 0.94461 0.89014 0.92058 0.88470 0.93956 0.89213 0.90194 0.88428 0.93428 0.90330 0.96942 0.88644 0.91108 0.91702 0.99065 0.93257 0.92813 0.80735 0.86975 0.85481 0.83752 0.90012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 11.01 113.37 1.25 1.69 16 2 O -0.41 -9.68 10.67 -144.34 -1.54 -11.22 16 3 C 0.06 1.06 6.32 71.98 0.45 1.52 16 4 C 0.05 0.94 6.13 71.98 0.44 1.39 16 5 O -0.39 -10.99 9.94 -144.34 -1.43 -12.42 16 6 C 0.19 4.59 3.14 29.85 0.09 4.68 16 7 H 0.11 1.76 6.64 -2.38 -0.02 1.74 16 8 C -0.16 -3.17 9.51 71.98 0.68 -2.49 16 9 C 0.17 6.16 6.95 137.64 0.96 7.11 16 10 N -0.31 -14.30 12.18 -49.54 -0.60 -14.91 16 11 N -0.37 -18.53 12.10 -58.00 -0.70 -19.23 16 12 C 0.37 16.08 4.81 260.11 1.25 17.33 16 13 N -0.45 -19.71 2.01 -710.97 -1.43 -21.14 16 14 C 0.05 2.02 9.15 127.69 1.17 3.19 16 15 C 0.24 12.46 1.94 44.17 0.09 12.54 16 16 H -0.03 -2.17 8.07 -2.39 -0.02 -2.19 16 17 C -0.11 -5.64 8.63 71.98 0.62 -5.02 16 18 C -0.52 -27.50 7.95 25.60 0.20 -27.30 16 19 H 0.08 3.86 6.39 -2.91 -0.02 3.84 16 20 C 0.01 0.68 5.30 84.66 0.45 1.13 16 21 N -0.92 -53.92 11.32 21.45 0.24 -53.68 16 22 Si 0.97 42.34 29.54 68.60 2.03 44.37 16 23 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 24 H -0.29 -12.73 7.11 99.48 0.71 -12.02 16 25 H -0.26 -10.86 7.11 99.48 0.71 -10.15 16 26 N -0.43 -14.97 3.15 -492.47 -1.55 -16.52 16 27 C 0.03 0.71 6.68 44.99 0.30 1.01 16 28 C -0.18 -4.67 9.85 30.62 0.30 -4.37 16 29 C -0.15 -2.95 10.34 30.62 0.32 -2.63 16 30 H 0.04 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 33 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.04 0.91 8.14 -2.38 -0.02 0.89 16 35 H 0.09 1.08 8.09 -2.39 -0.02 1.06 16 36 H 0.08 1.07 7.87 -2.39 -0.02 1.05 16 37 H 0.10 1.38 7.87 -2.39 -0.02 1.36 16 38 H 0.05 1.25 8.14 -2.38 -0.02 1.23 16 39 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 40 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 41 H 0.10 3.68 6.29 -2.38 -0.01 3.67 16 42 H 0.07 2.40 7.84 -2.38 -0.02 2.38 16 43 H 0.06 3.72 6.07 -2.39 -0.01 3.70 16 44 H -0.01 -0.52 7.22 -2.39 -0.02 -0.54 16 45 H 0.05 2.35 7.25 -2.39 -0.02 2.33 16 46 H 0.26 14.64 8.31 -92.71 -0.77 13.87 16 47 H 0.18 2.61 7.18 -2.39 -0.02 2.59 16 48 H 0.11 3.97 4.43 -2.39 -0.01 3.96 16 49 H 0.13 2.47 8.14 -2.39 -0.02 2.45 16 50 H 0.14 1.71 8.14 -2.39 -0.02 1.69 16 51 H 0.08 2.01 7.88 -2.39 -0.02 1.99 16 Total: -1.00 -79.68 408.75 4.50 -75.18 By element: Atomic # 1 Polarization: 18.88 SS G_CDS: 0.92 Total: 19.79 kcal Atomic # 6 Polarization: 1.21 SS G_CDS: 8.58 Total: 9.79 kcal Atomic # 7 Polarization: -121.43 SS G_CDS: -4.05 Total: -125.48 kcal Atomic # 8 Polarization: -20.67 SS G_CDS: -2.97 Total: -23.65 kcal Atomic # 14 Polarization: 42.34 SS G_CDS: 2.03 Total: 44.37 kcal Total: -79.68 4.50 -75.18 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000584727186.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.149 kcal (2) G-P(sol) polarization free energy of solvation -79.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.177 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds