Wall clock time and date at job start Tue Mar 31 2020 22:50:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42898 * 113.99782 * 2 1 4 4 C 1.50704 * 109.47206 * 179.97438 * 3 2 1 5 5 N 1.30294 * 126.34794 * 270.15849 * 4 3 2 6 6 N 1.28532 * 110.04844 * 180.30652 * 5 4 3 7 7 C 1.31214 * 109.85998 * 359.72071 * 6 5 4 8 8 N 1.38582 * 126.47042 * 180.02562 * 7 6 5 9 9 C 1.46898 * 111.00245 * 292.18347 * 8 7 6 10 10 C 1.46901 * 110.99574 * 56.13803 * 8 7 6 11 11 H 1.09001 * 109.47133 * 299.99298 * 10 8 7 12 12 C 1.52996 * 109.47612 * 59.99730 * 10 8 7 13 13 C 1.50709 * 109.46951 * 179.97438 * 10 8 7 14 14 H 1.07999 * 119.99661 * 359.97438 * 13 10 8 15 15 C 1.37871 * 119.99772 * 180.02562 * 13 10 8 16 16 N 1.31520 * 119.99699 * 179.97438 * 15 13 10 17 17 Si 1.86796 * 120.00513 * 359.97438 * 15 13 10 18 18 H 1.48497 * 109.47450 * 89.99964 * 17 15 13 19 19 H 1.48505 * 109.47533 * 210.00163 * 17 15 13 20 20 H 1.48500 * 109.47026 * 330.00202 * 17 15 13 21 21 N 1.36447 * 107.05808 * 359.97438 * 7 6 5 22 22 C 1.46500 * 127.14201 * 180.02562 * 21 7 6 23 23 C 1.52999 * 109.47090 * 87.94311 * 22 21 7 24 24 H 1.08996 * 109.48048 * 304.98174 * 23 22 21 25 25 C 1.53097 * 109.47918 * 184.94289 * 23 22 21 26 26 C 1.53180 * 109.16022 * 182.41028 * 25 23 22 27 27 C 1.53175 * 109.03435 * 56.98862 * 26 25 23 28 28 C 1.53092 * 109.16159 * 303.01151 * 27 26 25 29 29 O 1.42903 * 109.41446 * 57.61197 * 28 27 26 30 30 H 1.08998 * 109.47428 * 59.99900 * 1 2 3 31 31 H 1.09000 * 109.47262 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47391 * 299.99694 * 1 2 3 33 33 H 1.09011 * 109.47020 * 60.00006 * 3 2 1 34 34 H 1.08997 * 109.47479 * 300.00518 * 3 2 1 35 35 H 1.09001 * 109.47152 * 66.33461 * 9 8 7 36 36 H 1.09004 * 109.46690 * 186.33640 * 9 8 7 37 37 H 1.08996 * 109.46925 * 306.33433 * 9 8 7 38 38 H 1.09005 * 109.46804 * 59.99864 * 12 10 8 39 39 H 1.08999 * 109.47690 * 179.97438 * 12 10 8 40 40 H 1.08992 * 109.47180 * 300.00193 * 12 10 8 41 41 H 0.97003 * 119.99956 * 179.97438 * 16 15 13 42 42 H 1.09004 * 109.46860 * 327.94644 * 22 21 7 43 43 H 1.08997 * 109.47219 * 207.95373 * 22 21 7 44 44 H 1.09001 * 109.51817 * 62.50960 * 25 23 22 45 45 H 1.08992 * 109.52516 * 302.31972 * 25 23 22 46 46 H 1.08997 * 109.54714 * 297.11495 * 26 25 23 47 47 H 1.09004 * 109.54040 * 176.85018 * 26 25 23 48 48 H 1.08996 * 109.52513 * 62.92068 * 27 26 25 49 49 H 1.08999 * 109.51792 * 183.11222 * 27 26 25 50 50 H 1.08997 * 109.47944 * 177.59274 * 28 27 26 51 51 H 1.08998 * 109.48564 * 297.62227 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1865 0.0006 5 7 4.2817 1.1229 1.0504 6 7 5.5122 1.0329 0.6902 7 6 5.5942 1.0284 -0.6194 8 7 6.7548 0.9435 -1.3718 9 6 7.5697 2.1564 -1.2214 10 6 7.5255 -0.2559 -1.0171 11 1 7.7953 -0.2154 0.0382 12 6 6.6784 -1.5026 -1.2795 13 6 8.7773 -0.3143 -1.8543 14 1 8.9798 0.4616 -2.5777 15 6 9.6633 -1.3589 -1.6973 16 7 10.7555 -1.4102 -2.4283 17 14 9.3127 -2.7013 -0.4466 18 1 8.5319 -3.7873 -1.0917 19 1 10.5950 -3.2496 0.0638 20 1 8.5324 -2.1343 0.6825 21 7 4.3207 1.1218 -1.1004 22 6 3.9059 1.1531 -2.5051 23 6 3.7058 -0.2773 -3.0097 24 1 4.6148 -0.8538 -2.8381 25 6 3.3928 -0.2510 -4.5081 26 6 3.1346 -1.6809 -4.9930 27 6 1.9935 -2.2886 -4.1715 28 6 2.3605 -2.2363 -2.6861 29 8 2.6180 -0.8825 -2.3079 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.6885 1.8464 0.8901 34 1 1.6885 1.8464 -0.8899 35 1 7.9347 2.2241 -0.1965 36 1 8.4163 2.1125 -1.9065 37 1 6.9627 3.0325 -1.4495 38 1 6.4086 -1.5430 -2.3349 39 1 7.2503 -2.3925 -1.0168 40 1 5.7728 -1.4605 -0.6744 41 1 11.3791 -2.1449 -2.3176 42 1 4.6758 1.6441 -3.1004 43 1 2.9701 1.7046 -2.5954 44 1 4.2399 0.1699 -5.0498 45 1 2.5070 0.3590 -4.6846 46 1 4.0366 -2.2787 -4.8624 47 1 2.8563 -1.6638 -6.0468 48 1 1.0794 -1.7197 -4.3411 49 1 1.8399 -3.3249 -4.4724 50 1 1.5340 -2.6283 -2.0935 51 1 3.2517 -2.8386 -2.5104 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000589678484.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:50:50 Heat of formation + Delta-G solvation = 9.682633 kcal Electronic energy + Delta-G solvation = -32654.246434 eV Core-core repulsion = 28591.308276 eV Total energy + Delta-G solvation = -4062.938159 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 2.08 seconds Orbital eigenvalues (eV) -42.61205 -39.39280 -37.85145 -37.16225 -35.03428 -33.63793 -32.86246 -31.55644 -30.85932 -30.10583 -27.59140 -27.18453 -25.83079 -25.17453 -24.48003 -24.30826 -22.75829 -21.82015 -20.51221 -20.28917 -19.49602 -17.09701 -16.81954 -16.66712 -16.28445 -16.14061 -15.79526 -15.63890 -15.33178 -14.97802 -14.86636 -14.54279 -14.40609 -13.78557 -13.42721 -13.39490 -13.05871 -12.79337 -12.63061 -12.58284 -12.56051 -12.29208 -12.22588 -11.82345 -11.51027 -11.39244 -11.29279 -11.15256 -11.03395 -10.98838 -10.75887 -10.72098 -10.44070 -10.24451 -10.14317 -9.77102 -9.68986 -9.58986 -9.35632 -9.24749 -8.65817 -8.58337 -7.92012 -6.15398 -4.15877 1.95618 2.59145 3.14677 3.24176 3.37226 3.42386 3.72305 3.94071 4.34347 4.35501 4.58998 4.62154 4.72151 4.74302 4.75667 4.85444 4.94084 5.07187 5.14927 5.17799 5.23550 5.25506 5.28672 5.34284 5.47505 5.54760 5.57499 5.60665 5.73036 5.77668 5.81256 5.87565 5.88497 5.97439 6.10553 6.16762 6.23817 6.29499 6.31189 6.36737 6.50484 6.65277 6.79857 6.95339 7.07186 7.13659 7.25324 7.42336 7.65214 7.95740 8.49948 8.86943 9.15416 9.45431 10.96351 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.011109 B = 0.004817 C = 0.004060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2519.855383 B = 5810.784466 C = 6894.628415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.362 6.362 3 C 0.165 3.835 4 C 0.171 3.829 5 N -0.275 5.275 6 N -0.318 5.318 7 C 0.377 3.623 8 N -0.462 5.462 9 C 0.049 3.951 10 C 0.197 3.803 11 H 0.022 0.978 12 C -0.143 4.143 13 C -0.512 4.512 14 H 0.087 0.913 15 C 0.079 3.921 16 N -0.894 5.894 17 Si 0.877 3.123 18 H -0.279 1.279 19 H -0.294 1.294 20 H -0.263 1.263 21 N -0.456 5.456 22 C 0.127 3.873 23 C 0.068 3.932 24 H 0.079 0.921 25 C -0.144 4.144 26 C -0.121 4.121 27 C -0.154 4.154 28 C 0.065 3.935 29 O -0.356 6.356 30 H 0.039 0.961 31 H 0.084 0.916 32 H 0.038 0.962 33 H 0.077 0.923 34 H 0.061 0.939 35 H 0.037 0.963 36 H 0.096 0.904 37 H 0.046 0.954 38 H 0.056 0.944 39 H 0.048 0.952 40 H 0.025 0.975 41 H 0.266 0.734 42 H 0.114 0.886 43 H 0.092 0.908 44 H 0.079 0.921 45 H 0.069 0.931 46 H 0.067 0.933 47 H 0.067 0.933 48 H 0.068 0.932 49 H 0.069 0.931 50 H 0.090 0.910 51 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.705 3.718 -4.375 22.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.279 6.279 3 C 0.086 3.914 4 C -0.096 4.096 5 N -0.118 5.118 6 N -0.162 5.162 7 C 0.021 3.979 8 N -0.189 5.189 9 C -0.098 4.098 10 C 0.091 3.909 11 H 0.039 0.961 12 C -0.201 4.201 13 C -0.550 4.550 14 H 0.105 0.895 15 C -0.124 4.124 16 N -0.531 5.531 17 Si 0.707 3.293 18 H -0.206 1.206 19 H -0.221 1.221 20 H -0.188 1.188 21 N -0.149 5.149 22 C 0.003 3.997 23 C 0.009 3.991 24 H 0.096 0.904 25 C -0.182 4.182 26 C -0.159 4.159 27 C -0.192 4.192 28 C -0.012 4.012 29 O -0.275 6.275 30 H 0.057 0.943 31 H 0.102 0.898 32 H 0.057 0.943 33 H 0.095 0.905 34 H 0.079 0.921 35 H 0.055 0.945 36 H 0.115 0.885 37 H 0.065 0.935 38 H 0.075 0.925 39 H 0.066 0.934 40 H 0.044 0.956 41 H 0.076 0.924 42 H 0.132 0.868 43 H 0.110 0.890 44 H 0.097 0.903 45 H 0.088 0.912 46 H 0.086 0.914 47 H 0.085 0.915 48 H 0.086 0.914 49 H 0.088 0.912 50 H 0.108 0.892 51 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -21.242 3.472 -3.338 21.781 hybrid contribution -0.336 -0.872 -0.357 1.000 sum -21.578 2.600 -3.695 22.046 Atomic orbital electron populations 1.22676 0.81219 1.02628 0.99514 1.88109 1.18968 1.25645 1.95197 1.20271 0.83658 0.86213 1.01284 1.23996 0.94879 1.07805 0.82932 1.73948 0.96969 1.16640 1.24231 1.74707 1.11445 1.21108 1.08966 1.22829 0.86339 1.00250 0.88435 1.59035 1.02718 1.06330 1.50783 1.22266 0.97277 0.88348 1.01934 1.19811 0.91385 0.83153 0.96565 0.96071 1.22189 0.98227 0.99052 1.00622 1.20849 1.01792 1.10560 1.21794 0.89532 1.24803 0.94752 0.97524 0.95343 1.69855 1.11205 1.32318 1.39739 0.87000 0.76854 0.82626 0.82797 1.20559 1.22109 1.18832 1.46202 1.06516 1.54294 1.07859 1.21835 1.02025 0.96941 0.78854 1.22545 0.91735 0.93647 0.91151 0.90357 1.22097 1.02621 0.97943 0.95568 1.21556 0.98945 0.95896 0.99501 1.22191 0.99047 1.01383 0.96568 1.22468 1.00577 0.83977 0.94133 1.88069 1.50900 1.26029 1.62453 0.94272 0.89783 0.94322 0.90496 0.92111 0.94461 0.88548 0.93527 0.92515 0.93359 0.95560 0.92410 0.86779 0.88957 0.90261 0.91193 0.91416 0.91459 0.91355 0.91215 0.89160 0.93493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.32 11.01 101.05 1.11 1.43 16 2 O -0.36 -4.79 9.26 -50.39 -0.47 -5.25 16 3 C 0.16 2.05 6.30 36.01 0.23 2.28 16 4 C 0.17 2.90 7.70 -154.01 -1.19 1.71 16 5 N -0.28 -5.65 12.18 32.99 0.40 -5.25 16 6 N -0.32 -7.11 12.05 30.31 0.37 -6.75 16 7 C 0.38 7.61 5.06 -318.89 -1.61 6.00 16 8 N -0.46 -9.63 4.66 -176.08 -0.82 -10.45 16 9 C 0.05 0.94 9.14 60.06 0.55 1.49 16 10 C 0.20 4.76 1.57 -68.86 -0.11 4.65 16 11 H 0.02 0.58 7.10 -51.93 -0.37 0.21 16 12 C -0.14 -3.31 8.10 37.16 0.30 -3.01 16 13 C -0.51 -13.75 8.53 -34.44 -0.29 -14.05 16 14 H 0.09 2.45 6.64 -52.49 -0.35 2.10 16 15 C 0.08 2.21 5.45 -17.82 -0.10 2.11 16 16 N -0.89 -26.37 13.96 55.43 0.77 -25.60 16 17 Si 0.88 22.12 24.37 -169.99 -4.14 17.98 16 18 H -0.28 -6.84 6.87 56.52 0.39 -6.45 16 19 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 20 H -0.26 -6.70 6.53 56.52 0.37 -6.33 16 21 N -0.46 -7.62 2.76 -114.09 -0.31 -7.93 16 22 C 0.13 1.63 5.71 -4.04 -0.02 1.60 16 23 C 0.07 0.89 2.89 -26.68 -0.08 0.81 16 24 H 0.08 1.29 6.27 -51.93 -0.33 0.96 16 25 C -0.14 -1.47 5.42 -26.59 -0.14 -1.61 16 26 C -0.12 -1.20 6.03 -26.55 -0.16 -1.36 16 27 C -0.15 -1.43 6.14 -26.59 -0.16 -1.60 16 28 C 0.07 0.76 6.84 37.21 0.25 1.01 16 29 O -0.36 -4.78 8.93 -50.39 -0.45 -5.23 16 30 H 0.04 0.29 8.14 -51.93 -0.42 -0.14 16 31 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.04 0.29 8.14 -51.93 -0.42 -0.14 16 33 H 0.08 0.84 8.14 -51.92 -0.42 0.42 16 34 H 0.06 0.60 7.23 -51.93 -0.38 0.23 16 35 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 36 H 0.10 1.90 6.33 -51.93 -0.33 1.57 16 37 H 0.05 0.76 8.10 -51.93 -0.42 0.34 16 38 H 0.06 1.24 6.80 -51.93 -0.35 0.89 16 39 H 0.05 1.16 3.27 -51.93 -0.17 0.99 16 40 H 0.03 0.59 7.22 -51.93 -0.38 0.22 16 41 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 42 H 0.11 1.39 8.14 -51.93 -0.42 0.97 16 43 H 0.09 0.93 7.18 -51.93 -0.37 0.56 16 44 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 45 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 46 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 47 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 48 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 49 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 50 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 51 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 392.98 15.07 5.92 5.92 Total: -1.00 -33.26 392.98 -8.69 -41.95 By element: Atomic # 1 Polarization: 7.67 SS G_CDS: -8.54 Total: -0.87 kcal Atomic # 6 Polarization: 2.90 SS G_CDS: -1.42 Total: 1.48 kcal Atomic # 7 Polarization: -56.38 SS G_CDS: 0.41 Total: -55.98 kcal Atomic # 8 Polarization: -9.56 SS G_CDS: -0.92 Total: -10.48 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -4.14 Total: 17.98 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -33.26 -8.69 -41.95 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589678484.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.629 kcal (2) G-P(sol) polarization free energy of solvation -33.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.946 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.08 seconds