Wall clock time and date at job start Tue Mar 31 2020 22:50:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42898 * 113.99782 * 2 1 4 4 C 1.50704 * 109.47206 * 179.97438 * 3 2 1 5 5 N 1.30294 * 126.34794 * 270.15849 * 4 3 2 6 6 N 1.28532 * 110.04844 * 180.30652 * 5 4 3 7 7 C 1.31214 * 109.85998 * 359.72071 * 6 5 4 8 8 N 1.38582 * 126.47042 * 180.02562 * 7 6 5 9 9 C 1.46898 * 111.00245 * 292.18347 * 8 7 6 10 10 C 1.46901 * 110.99574 * 56.13803 * 8 7 6 11 11 H 1.09001 * 109.47133 * 299.99298 * 10 8 7 12 12 C 1.52996 * 109.47612 * 59.99730 * 10 8 7 13 13 C 1.50709 * 109.46951 * 179.97438 * 10 8 7 14 14 H 1.07999 * 119.99661 * 359.97438 * 13 10 8 15 15 C 1.37871 * 119.99772 * 180.02562 * 13 10 8 16 16 N 1.31520 * 119.99699 * 179.97438 * 15 13 10 17 17 Si 1.86796 * 120.00513 * 359.97438 * 15 13 10 18 18 H 1.48497 * 109.47450 * 89.99964 * 17 15 13 19 19 H 1.48505 * 109.47533 * 210.00163 * 17 15 13 20 20 H 1.48500 * 109.47026 * 330.00202 * 17 15 13 21 21 N 1.36447 * 107.05808 * 359.97438 * 7 6 5 22 22 C 1.46500 * 127.14201 * 180.02562 * 21 7 6 23 23 C 1.52999 * 109.47090 * 87.94311 * 22 21 7 24 24 H 1.08996 * 109.48048 * 304.98174 * 23 22 21 25 25 C 1.53097 * 109.47918 * 184.94289 * 23 22 21 26 26 C 1.53180 * 109.16022 * 182.41028 * 25 23 22 27 27 C 1.53175 * 109.03435 * 56.98862 * 26 25 23 28 28 C 1.53092 * 109.16159 * 303.01151 * 27 26 25 29 29 O 1.42903 * 109.41446 * 57.61197 * 28 27 26 30 30 H 1.08998 * 109.47428 * 59.99900 * 1 2 3 31 31 H 1.09000 * 109.47262 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47391 * 299.99694 * 1 2 3 33 33 H 1.09011 * 109.47020 * 60.00006 * 3 2 1 34 34 H 1.08997 * 109.47479 * 300.00518 * 3 2 1 35 35 H 1.09001 * 109.47152 * 66.33461 * 9 8 7 36 36 H 1.09004 * 109.46690 * 186.33640 * 9 8 7 37 37 H 1.08996 * 109.46925 * 306.33433 * 9 8 7 38 38 H 1.09005 * 109.46804 * 59.99864 * 12 10 8 39 39 H 1.08999 * 109.47690 * 179.97438 * 12 10 8 40 40 H 1.08992 * 109.47180 * 300.00193 * 12 10 8 41 41 H 0.97003 * 119.99956 * 179.97438 * 16 15 13 42 42 H 1.09004 * 109.46860 * 327.94644 * 22 21 7 43 43 H 1.08997 * 109.47219 * 207.95373 * 22 21 7 44 44 H 1.09001 * 109.51817 * 62.50960 * 25 23 22 45 45 H 1.08992 * 109.52516 * 302.31972 * 25 23 22 46 46 H 1.08997 * 109.54714 * 297.11495 * 26 25 23 47 47 H 1.09004 * 109.54040 * 176.85018 * 26 25 23 48 48 H 1.08996 * 109.52513 * 62.92068 * 27 26 25 49 49 H 1.08999 * 109.51792 * 183.11222 * 27 26 25 50 50 H 1.08997 * 109.47944 * 177.59274 * 28 27 26 51 51 H 1.08998 * 109.48564 * 297.62227 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1865 0.0006 5 7 4.2817 1.1229 1.0504 6 7 5.5122 1.0329 0.6902 7 6 5.5942 1.0284 -0.6194 8 7 6.7548 0.9435 -1.3718 9 6 7.5697 2.1564 -1.2214 10 6 7.5255 -0.2559 -1.0171 11 1 7.7953 -0.2154 0.0382 12 6 6.6784 -1.5026 -1.2795 13 6 8.7773 -0.3143 -1.8543 14 1 8.9798 0.4616 -2.5777 15 6 9.6633 -1.3589 -1.6973 16 7 10.7555 -1.4102 -2.4283 17 14 9.3127 -2.7013 -0.4466 18 1 8.5319 -3.7873 -1.0917 19 1 10.5950 -3.2496 0.0638 20 1 8.5324 -2.1343 0.6825 21 7 4.3207 1.1218 -1.1004 22 6 3.9059 1.1531 -2.5051 23 6 3.7058 -0.2773 -3.0097 24 1 4.6148 -0.8538 -2.8381 25 6 3.3928 -0.2510 -4.5081 26 6 3.1346 -1.6809 -4.9930 27 6 1.9935 -2.2886 -4.1715 28 6 2.3605 -2.2363 -2.6861 29 8 2.6180 -0.8825 -2.3079 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.6885 1.8464 0.8901 34 1 1.6885 1.8464 -0.8899 35 1 7.9347 2.2241 -0.1965 36 1 8.4163 2.1125 -1.9065 37 1 6.9627 3.0325 -1.4495 38 1 6.4086 -1.5430 -2.3349 39 1 7.2503 -2.3925 -1.0168 40 1 5.7728 -1.4605 -0.6744 41 1 11.3791 -2.1449 -2.3176 42 1 4.6758 1.6441 -3.1004 43 1 2.9701 1.7046 -2.5954 44 1 4.2399 0.1699 -5.0498 45 1 2.5070 0.3590 -4.6846 46 1 4.0366 -2.2787 -4.8624 47 1 2.8563 -1.6638 -6.0468 48 1 1.0794 -1.7197 -4.3411 49 1 1.8399 -3.3249 -4.4724 50 1 1.5340 -2.6283 -2.0935 51 1 3.2517 -2.8386 -2.5104 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000589678484.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:50:47 Heat of formation + Delta-G solvation = -11.946120 kcal Electronic energy + Delta-G solvation = -32655.184328 eV Core-core repulsion = 28591.308276 eV Total energy + Delta-G solvation = -4063.876052 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 2.46 seconds Orbital eigenvalues (eV) -44.04356 -40.32695 -39.12132 -38.53621 -36.25408 -34.90783 -34.48702 -32.61437 -32.54951 -31.63458 -28.76946 -28.16857 -27.42025 -26.43277 -26.11657 -25.23591 -23.85012 -23.44037 -21.78166 -21.17341 -21.12806 -18.99178 -18.05085 -18.00001 -17.35811 -17.21848 -17.02915 -16.91610 -16.45179 -16.32069 -16.20094 -15.64449 -15.41886 -15.38346 -15.16422 -14.56560 -14.38377 -14.15873 -13.97448 -13.73219 -13.63373 -13.48427 -13.44599 -13.15745 -12.96743 -12.81706 -12.58806 -12.55469 -12.32626 -12.21139 -12.11205 -12.00369 -11.86935 -11.66294 -11.60835 -11.32319 -11.30819 -10.93683 -10.81650 -10.54264 -10.31207 -10.10722 -9.66184 -8.35766 -6.38298 0.59761 1.19905 1.28125 1.29890 1.38060 1.68848 2.23584 2.76871 2.80814 2.96850 2.99524 3.58248 3.66682 3.75142 3.83992 3.92682 3.96572 3.99427 4.09773 4.20265 4.24734 4.29139 4.35606 4.38531 4.43693 4.50101 4.51666 4.62065 4.63255 4.67894 4.68477 4.72747 4.81256 4.86819 4.92041 4.96110 4.96950 5.01369 5.05121 5.07838 5.14104 5.17690 5.18036 5.38666 5.42108 5.62176 5.79988 6.14010 6.27791 6.30103 6.53314 6.66302 7.25589 7.68799 8.78970 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.011109 B = 0.004817 C = 0.004060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2519.855383 B = 5810.784466 C = 6894.628415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.392 6.392 3 C 0.165 3.835 4 C 0.190 3.810 5 N -0.316 5.316 6 N -0.358 5.358 7 C 0.362 3.638 8 N -0.455 5.455 9 C 0.053 3.947 10 C 0.206 3.794 11 H -0.008 1.008 12 C -0.127 4.127 13 C -0.504 4.504 14 H 0.068 0.932 15 C 0.037 3.963 16 N -0.930 5.930 17 Si 0.923 3.077 18 H -0.265 1.265 19 H -0.289 1.289 20 H -0.272 1.272 21 N -0.447 5.447 22 C 0.119 3.881 23 C 0.071 3.929 24 H 0.037 0.963 25 C -0.136 4.136 26 C -0.124 4.124 27 C -0.144 4.144 28 C 0.061 3.939 29 O -0.365 6.365 30 H 0.058 0.942 31 H 0.089 0.911 32 H 0.050 0.950 33 H 0.092 0.908 34 H 0.095 0.905 35 H 0.021 0.979 36 H 0.086 0.914 37 H 0.078 0.922 38 H 0.065 0.935 39 H 0.039 0.961 40 H 0.022 0.978 41 H 0.269 0.731 42 H 0.120 0.880 43 H 0.130 0.870 44 H 0.080 0.920 45 H 0.094 0.906 46 H 0.045 0.955 47 H 0.087 0.913 48 H 0.084 0.916 49 H 0.080 0.920 50 H 0.101 0.899 51 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.220 4.222 -5.624 26.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.310 6.310 3 C 0.086 3.914 4 C -0.078 4.078 5 N -0.158 5.158 6 N -0.202 5.202 7 C 0.005 3.995 8 N -0.181 5.181 9 C -0.095 4.095 10 C 0.099 3.901 11 H 0.010 0.990 12 C -0.184 4.184 13 C -0.542 4.542 14 H 0.086 0.914 15 C -0.163 4.163 16 N -0.569 5.569 17 Si 0.752 3.248 18 H -0.191 1.191 19 H -0.216 1.216 20 H -0.197 1.197 21 N -0.139 5.139 22 C -0.003 4.003 23 C 0.012 3.988 24 H 0.055 0.945 25 C -0.174 4.174 26 C -0.162 4.162 27 C -0.182 4.182 28 C -0.016 4.016 29 O -0.284 6.284 30 H 0.077 0.923 31 H 0.108 0.892 32 H 0.069 0.931 33 H 0.110 0.890 34 H 0.113 0.887 35 H 0.040 0.960 36 H 0.105 0.895 37 H 0.097 0.903 38 H 0.083 0.917 39 H 0.057 0.943 40 H 0.041 0.959 41 H 0.079 0.921 42 H 0.138 0.862 43 H 0.148 0.852 44 H 0.099 0.901 45 H 0.113 0.887 46 H 0.064 0.936 47 H 0.105 0.895 48 H 0.103 0.897 49 H 0.099 0.901 50 H 0.119 0.881 51 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges -24.787 3.978 -4.603 25.523 hybrid contribution 0.636 -0.974 0.028 1.164 sum -24.151 3.004 -4.574 24.763 Atomic orbital electron populations 1.22869 0.78799 1.03560 1.01039 1.88053 1.21532 1.25888 1.95547 1.20534 0.80491 0.86653 1.03704 1.24922 0.96666 1.04258 0.82003 1.73863 0.96775 1.19101 1.26035 1.74581 1.12972 1.22272 1.10400 1.22626 0.87004 1.01720 0.88166 1.58940 1.02892 1.05600 1.50640 1.22258 0.97488 0.89027 1.00681 1.19492 0.91140 0.85354 0.94143 0.99010 1.21987 0.97507 0.97928 1.01024 1.20979 1.02666 1.09575 1.21008 0.91413 1.25364 0.94722 0.99425 0.96753 1.69940 1.12207 1.33361 1.41399 0.86251 0.76825 0.80947 0.80821 1.19147 1.21592 1.19714 1.46368 1.05085 1.53074 1.09421 1.22245 1.03946 0.97454 0.76612 1.22452 0.90214 0.92985 0.93191 0.94474 1.22058 1.03723 0.98592 0.93070 1.21595 0.98341 0.95427 1.00809 1.22118 0.99239 1.02384 0.94419 1.22575 0.99823 0.82978 0.96228 1.88042 1.50545 1.26645 1.63130 0.92340 0.89247 0.93107 0.88979 0.88688 0.96017 0.89525 0.90300 0.91656 0.94294 0.95887 0.92147 0.86153 0.85182 0.90150 0.88728 0.93577 0.89484 0.89749 0.90116 0.88105 0.96050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 11.01 113.37 1.25 1.71 16 2 O -0.39 -9.26 9.26 -134.48 -1.25 -10.50 16 3 C 0.16 3.57 6.30 71.24 0.45 4.02 16 4 C 0.19 6.14 7.70 137.64 1.06 7.20 16 5 N -0.32 -12.95 12.18 -49.53 -0.60 -13.56 16 6 N -0.36 -16.29 12.05 -58.01 -0.70 -16.99 16 7 C 0.36 14.64 5.06 260.12 1.32 15.95 16 8 N -0.45 -19.20 4.66 -711.00 -3.31 -22.52 16 9 C 0.05 2.04 9.14 127.69 1.17 3.21 16 10 C 0.21 10.21 1.57 44.17 0.07 10.27 16 11 H -0.01 -0.43 7.10 -2.39 -0.02 -0.45 16 12 C -0.13 -5.96 8.10 71.98 0.58 -5.38 16 13 C -0.50 -27.78 8.53 25.60 0.22 -27.56 16 14 H 0.07 3.94 6.64 -2.91 -0.02 3.92 16 15 C 0.04 2.12 5.45 84.65 0.46 2.58 16 16 N -0.93 -55.84 13.96 21.45 0.30 -55.54 16 17 Si 0.92 46.29 24.37 68.60 1.67 47.96 16 18 H -0.27 -12.66 6.87 99.48 0.68 -11.98 16 19 H -0.29 -14.17 7.11 99.48 0.71 -13.46 16 20 H -0.27 -13.92 6.53 99.48 0.65 -13.27 16 21 N -0.45 -14.34 2.76 -514.86 -1.42 -15.76 16 22 C 0.12 2.73 5.71 86.38 0.49 3.23 16 23 C 0.07 1.72 2.89 30.63 0.09 1.81 16 24 H 0.04 1.22 6.27 -2.39 -0.01 1.21 16 25 C -0.14 -2.39 5.42 30.69 0.17 -2.23 16 26 C -0.12 -2.16 6.03 30.71 0.19 -1.97 16 27 C -0.14 -2.28 6.14 30.68 0.19 -2.09 16 28 C 0.06 1.32 6.84 72.01 0.49 1.81 16 29 O -0.36 -9.01 8.93 -134.48 -1.20 -10.21 16 30 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.09 1.13 8.14 -2.39 -0.02 1.12 16 32 H 0.05 0.58 8.14 -2.38 -0.02 0.56 16 33 H 0.09 1.72 8.14 -2.38 -0.02 1.70 16 34 H 0.10 1.40 7.23 -2.39 -0.02 1.38 16 35 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 36 H 0.09 3.50 6.33 -2.39 -0.02 3.49 16 37 H 0.08 2.52 8.10 -2.39 -0.02 2.50 16 38 H 0.06 2.91 6.80 -2.38 -0.02 2.90 16 39 H 0.04 1.88 3.27 -2.39 -0.01 1.87 16 40 H 0.02 1.06 7.22 -2.39 -0.02 1.04 16 41 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 42 H 0.12 2.64 8.14 -2.39 -0.02 2.62 16 43 H 0.13 2.02 7.18 -2.39 -0.02 2.00 16 44 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 45 H 0.09 1.23 8.14 -2.39 -0.02 1.22 16 46 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 47 H 0.09 1.19 8.14 -2.38 -0.02 1.17 16 48 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 49 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 50 H 0.10 1.93 8.14 -2.39 -0.02 1.91 16 51 H 0.02 0.56 8.14 -2.39 -0.02 0.54 16 Total: -1.00 -74.62 392.98 2.51 -72.10 By element: Atomic # 1 Polarization: 11.60 SS G_CDS: 0.84 Total: 12.44 kcal Atomic # 6 Polarization: 4.38 SS G_CDS: 8.19 Total: 12.56 kcal Atomic # 7 Polarization: -118.62 SS G_CDS: -5.73 Total: -124.36 kcal Atomic # 8 Polarization: -18.27 SS G_CDS: -2.45 Total: -20.71 kcal Atomic # 14 Polarization: 46.29 SS G_CDS: 1.67 Total: 47.96 kcal Total: -74.62 2.51 -72.10 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589678484.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.157 kcal (2) G-P(sol) polarization free energy of solvation -74.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.103 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.46 seconds