Wall clock time and date at job start Tue Mar 31 2020 22:31:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42894 * 113.99822 * 2 1 4 4 C 1.50707 * 109.46954 * 180.02562 * 3 2 1 5 5 N 1.29948 * 126.28541 * 270.02769 * 4 3 2 6 6 O 1.21299 * 110.24689 * 179.68469 * 5 4 3 7 7 C 1.33636 * 109.81499 * 0.46542 * 6 5 4 8 8 C 1.50700 * 126.55626 * 179.80419 * 7 6 5 9 9 N 1.46901 * 109.47149 * 269.68748 * 8 7 6 10 10 C 1.46954 * 111.00171 * 293.79893 * 9 8 7 11 11 C 1.53045 * 109.36547 * 176.81011 * 10 9 8 12 12 N 1.46955 * 109.36477 * 58.39941 * 11 10 9 13 13 C 1.46901 * 111.00095 * 176.81009 * 12 11 10 14 14 C 1.53001 * 109.47004 * 307.67351 * 13 12 11 15 15 H 1.08997 * 109.46889 * 57.71596 * 14 13 12 16 16 C 1.53002 * 109.46866 * 177.70998 * 14 13 12 17 17 C 1.52996 * 109.47171 * 297.71108 * 14 13 12 18 18 C 1.50704 * 109.47141 * 174.99882 * 17 14 13 19 19 H 1.08007 * 119.99726 * 0.02562 * 18 17 14 20 20 C 1.37874 * 120.00025 * 179.97438 * 18 17 14 21 21 N 1.31513 * 120.00185 * 0.02562 * 20 18 17 22 22 Si 1.86804 * 119.99697 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.46840 * 90.00895 * 22 20 18 24 24 H 1.48508 * 109.46774 * 210.00390 * 22 20 18 25 25 H 1.48491 * 109.47334 * 330.00348 * 22 20 18 26 26 C 1.46954 * 110.88122 * 300.68138 * 12 11 10 27 27 C 1.46955 * 111.00095 * 169.99643 * 9 8 7 28 28 N 1.31132 * 106.89537 * 359.53917 * 7 6 5 29 29 H 1.09000 * 109.47220 * 60.00077 * 1 2 3 30 30 H 1.08999 * 109.47192 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47090 * 300.00183 * 1 2 3 32 32 H 1.09003 * 109.47542 * 60.00391 * 3 2 1 33 33 H 1.09004 * 109.47308 * 300.00001 * 3 2 1 34 34 H 1.08997 * 109.47084 * 29.68764 * 8 7 6 35 35 H 1.08998 * 109.47168 * 149.68686 * 8 7 6 36 36 H 1.09005 * 109.48611 * 296.78191 * 10 9 8 37 37 H 1.09004 * 109.49041 * 56.84009 * 10 9 8 38 38 H 1.08994 * 109.49107 * 298.43266 * 11 10 9 39 39 H 1.09003 * 109.48808 * 178.36764 * 11 10 9 40 40 H 1.09000 * 109.47316 * 67.67352 * 13 12 11 41 41 H 1.09004 * 109.47369 * 187.67238 * 13 12 11 42 42 H 1.08999 * 109.46972 * 65.08624 * 16 14 13 43 43 H 1.08997 * 109.47235 * 185.08332 * 16 14 13 44 44 H 1.08992 * 109.47595 * 305.08937 * 16 14 13 45 45 H 1.09001 * 109.47271 * 294.99955 * 17 14 13 46 46 H 1.09001 * 109.47308 * 54.99982 * 17 14 13 47 47 H 0.96994 * 120.00101 * 179.97438 * 21 20 18 48 48 H 1.09006 * 109.48639 * 299.35280 * 26 12 11 49 49 H 1.09004 * 109.50795 * 179.30368 * 26 12 11 50 50 H 1.09003 * 109.49005 * 303.15693 * 27 9 8 51 51 H 1.09004 * 109.48833 * 63.19860 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5125 1.1864 -0.0006 5 7 4.2796 1.1250 1.0465 6 8 5.4411 1.0269 0.7109 7 6 5.5288 1.0263 -0.6226 8 6 6.7915 0.9262 -1.4390 9 7 7.3116 2.2743 -1.7037 10 6 6.3975 3.0306 -2.5709 11 6 6.9342 4.4517 -2.7573 12 7 8.2810 4.3911 -3.3422 13 6 8.8011 5.7392 -3.6069 14 6 7.7803 6.5270 -4.4305 15 1 6.8327 6.5662 -3.8933 16 6 8.2968 7.9492 -4.6576 17 6 7.5732 5.8379 -5.7806 18 6 6.4797 6.5422 -6.5417 19 1 5.9825 7.3964 -6.1061 20 6 6.1148 6.0970 -7.7945 21 7 6.7206 5.0573 -8.3252 22 14 4.7599 6.9706 -8.7382 23 1 5.3516 8.0513 -9.5672 24 1 4.0626 5.9978 -9.6174 25 1 3.7884 7.5570 -7.7804 26 6 9.1951 3.6349 -2.4750 27 6 8.6584 2.2138 -2.2886 28 7 4.3056 1.1237 -1.0850 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.6886 1.8464 0.8900 33 1 1.6885 1.8464 -0.8900 34 1 7.5358 0.3514 -0.8879 35 1 6.5747 0.4284 -2.3840 36 1 6.3262 2.5386 -3.5410 37 1 5.4104 3.0721 -2.1105 38 1 6.9798 4.9529 -1.7906 39 1 6.2729 5.0056 -3.4237 40 1 8.9790 6.2522 -2.6618 41 1 9.7364 5.6654 -4.1619 42 1 9.1964 7.9152 -5.2721 43 1 7.5320 8.5367 -5.1655 44 1 8.5300 8.4089 -3.6973 45 1 8.4990 5.8775 -6.3546 46 1 7.2908 4.7977 -5.6181 47 1 6.4636 4.7438 -9.2064 48 1 9.2664 4.1268 -1.5049 49 1 10.1824 3.5934 -2.9350 50 1 9.3197 1.6598 -1.6223 51 1 8.6129 1.7121 -3.2553 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000589821969.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:31:10 Heat of formation + Delta-G solvation = 14.277392 kcal Electronic energy + Delta-G solvation = -29972.131767 eV Core-core repulsion = 25909.392852 eV Total energy + Delta-G solvation = -4062.738915 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -46.76619 -40.51317 -39.14874 -38.07034 -36.86815 -35.70516 -34.27573 -33.47001 -31.87728 -30.12831 -29.62099 -28.87929 -26.99131 -26.94032 -25.44721 -24.70050 -24.54952 -23.93054 -22.35995 -20.98676 -20.18907 -19.38776 -18.72116 -18.45192 -17.52604 -17.34244 -17.04750 -16.66773 -16.59313 -16.25914 -16.05277 -15.93794 -15.68976 -15.40394 -15.12638 -14.48593 -14.19273 -14.17983 -13.83195 -13.62145 -13.49196 -13.36122 -13.17751 -13.07171 -13.00376 -12.83099 -12.72705 -12.57614 -12.40213 -12.26563 -12.22567 -12.21873 -12.16594 -11.87798 -11.67339 -11.34022 -11.18734 -10.90790 -10.89673 -10.78761 -10.45604 -9.57347 -9.06489 -8.10241 -6.18239 -0.04631 0.89847 1.40164 1.40713 1.51090 1.67449 2.26080 2.44955 2.72741 2.91371 3.05476 3.16765 3.22833 3.71873 3.88798 3.98675 4.00567 4.06532 4.19438 4.30409 4.32395 4.37533 4.41223 4.44711 4.49182 4.50784 4.53640 4.58118 4.59871 4.63385 4.79370 4.80206 4.83398 4.86919 4.91023 4.95273 4.96632 5.06699 5.14282 5.32682 5.45320 5.51455 5.67660 5.74897 5.84253 5.92209 5.95977 6.04387 6.23733 6.33915 6.40363 7.00002 7.00309 7.48812 9.00965 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.009370 B = 0.002848 C = 0.002352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2987.631862 B = 9828.568571 C =11900.029299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.413 6.413 3 C 0.154 3.846 4 C 0.158 3.842 5 N -0.384 5.384 6 O 0.092 5.908 7 C 0.205 3.795 8 C 0.144 3.856 9 N -0.537 5.537 10 C 0.067 3.933 11 C 0.065 3.935 12 N -0.551 5.551 13 C 0.075 3.925 14 C -0.086 4.086 15 H 0.052 0.948 16 C -0.126 4.126 17 C 0.050 3.950 18 C -0.528 4.528 19 H 0.054 0.946 20 C 0.001 3.999 21 N -0.931 5.931 22 Si 0.951 3.049 23 H -0.275 1.275 24 H -0.285 1.285 25 H -0.266 1.266 26 C 0.056 3.944 27 C 0.064 3.936 28 N -0.492 5.492 29 H 0.056 0.944 30 H 0.101 0.899 31 H 0.061 0.939 32 H 0.097 0.903 33 H 0.094 0.906 34 H 0.155 0.845 35 H 0.091 0.909 36 H 0.032 0.968 37 H 0.069 0.931 38 H 0.036 0.964 39 H 0.066 0.934 40 H 0.040 0.960 41 H 0.068 0.932 42 H 0.043 0.957 43 H 0.043 0.957 44 H 0.062 0.938 45 H -0.021 1.021 46 H 0.003 0.997 47 H 0.259 0.741 48 H 0.044 0.956 49 H 0.091 0.909 50 H 0.122 0.878 51 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.163 -9.439 19.816 22.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.331 6.331 3 C 0.077 3.923 4 C -0.115 4.115 5 N -0.091 5.091 6 O 0.031 5.969 7 C -0.016 4.016 8 C 0.015 3.985 9 N -0.263 5.263 10 C -0.062 4.062 11 C -0.063 4.063 12 N -0.276 5.276 13 C -0.052 4.052 14 C -0.104 4.104 15 H 0.071 0.929 16 C -0.184 4.184 17 C 0.013 3.987 18 C -0.566 4.566 19 H 0.072 0.928 20 C -0.196 4.196 21 N -0.572 5.572 22 Si 0.777 3.223 23 H -0.200 1.200 24 H -0.211 1.211 25 H -0.190 1.190 26 C -0.072 4.072 27 C -0.063 4.063 28 N -0.227 5.227 29 H 0.075 0.925 30 H 0.120 0.880 31 H 0.080 0.920 32 H 0.115 0.885 33 H 0.112 0.888 34 H 0.172 0.828 35 H 0.109 0.891 36 H 0.050 0.950 37 H 0.088 0.912 38 H 0.055 0.945 39 H 0.084 0.916 40 H 0.058 0.942 41 H 0.086 0.914 42 H 0.062 0.938 43 H 0.063 0.937 44 H 0.081 0.919 45 H -0.002 1.002 46 H 0.022 0.978 47 H 0.068 0.932 48 H 0.063 0.937 49 H 0.109 0.891 50 H 0.140 0.860 51 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -2.724 -9.670 20.178 22.541 hybrid contribution -0.927 0.632 -1.131 1.593 sum -3.651 -9.038 19.048 21.397 Atomic orbital electron populations 1.23036 0.77610 1.04525 1.01717 1.87872 1.22862 1.26602 1.95811 1.20559 0.81185 0.86296 1.04296 1.25819 1.00325 1.01815 0.83580 1.74606 0.90172 1.19999 1.24337 1.85272 1.21970 1.64462 1.25230 1.29077 0.96840 0.93886 0.81781 1.20775 0.88103 0.92082 0.97521 1.62155 1.03670 1.13442 1.47071 1.22051 0.95535 0.93860 0.94725 1.22024 0.91252 0.96047 0.97007 1.62064 1.02529 1.16570 1.46408 1.22049 0.97801 0.87639 0.97758 1.21216 0.97208 0.95199 0.96815 0.92930 1.21609 1.00378 0.95823 1.00569 1.18818 0.93847 0.95050 0.90956 1.21721 1.19415 1.13819 1.01641 0.92771 1.25845 0.98993 0.95856 0.98940 1.70108 1.43672 1.26397 1.17050 0.85655 0.79620 0.78348 0.78676 1.20037 1.21123 1.19022 1.22237 0.96243 0.93651 0.95055 1.22270 0.88024 0.96966 0.99006 1.71956 1.00840 1.20054 1.29810 0.92497 0.88013 0.92050 0.88463 0.88813 0.82774 0.89074 0.94997 0.91219 0.94538 0.91617 0.94191 0.91381 0.93767 0.93747 0.91860 1.00224 0.97844 0.93231 0.93749 0.89106 0.86009 0.93920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 11.01 113.37 1.25 1.58 16 2 O -0.41 -8.95 10.69 -148.98 -1.59 -10.55 16 3 C 0.15 3.14 6.56 71.24 0.47 3.60 16 4 C 0.16 4.12 7.85 138.47 1.09 5.21 16 5 N -0.38 -10.22 12.16 -60.33 -0.73 -10.95 16 6 O 0.09 2.21 11.31 74.90 0.85 3.06 16 7 C 0.21 4.70 7.14 88.38 0.63 5.33 16 8 C 0.14 2.46 5.59 85.56 0.48 2.93 16 9 N -0.54 -11.66 4.70 -900.30 -4.23 -15.89 16 10 C 0.07 1.94 5.44 86.31 0.47 2.41 16 11 C 0.07 2.10 5.13 86.31 0.44 2.55 16 12 N -0.55 -17.72 4.07 -895.73 -3.64 -21.37 16 13 C 0.07 2.48 4.55 86.30 0.39 2.87 16 14 C -0.09 -3.44 1.86 -10.79 -0.02 -3.46 16 15 H 0.05 2.16 6.11 -2.39 -0.01 2.15 16 16 C -0.13 -4.57 8.92 71.98 0.64 -3.93 16 17 C 0.05 2.63 4.31 29.85 0.13 2.76 16 18 C -0.53 -29.92 8.47 25.60 0.22 -29.71 16 19 H 0.05 2.97 7.06 -2.91 -0.02 2.95 16 20 C 0.00 0.05 5.46 84.65 0.46 0.51 16 21 N -0.93 -57.43 13.29 21.45 0.28 -57.15 16 22 Si 0.95 45.03 29.54 68.60 2.03 47.06 16 23 H -0.27 -12.60 7.11 99.48 0.71 -11.89 16 24 H -0.29 -13.32 7.11 99.48 0.71 -12.62 16 25 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 26 C 0.06 1.31 5.62 86.31 0.48 1.79 16 27 C 0.06 1.23 5.61 86.31 0.48 1.71 16 28 N -0.49 -13.46 10.76 -303.22 -3.26 -16.72 16 29 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 32 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 33 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 34 H 0.15 1.38 8.03 -2.39 -0.02 1.36 16 35 H 0.09 1.56 8.12 -2.39 -0.02 1.54 16 36 H 0.03 1.07 8.14 -2.38 -0.02 1.05 16 37 H 0.07 2.11 6.60 -2.38 -0.02 2.09 16 38 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 39 H 0.07 2.53 5.90 -2.39 -0.01 2.52 16 40 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 41 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 42 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 43 H 0.04 1.73 7.10 -2.39 -0.02 1.71 16 44 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 45 H -0.02 -1.19 8.14 -2.39 -0.02 -1.21 16 46 H 0.00 0.18 7.53 -2.39 -0.02 0.16 16 47 H 0.26 15.12 8.31 -92.71 -0.77 14.35 16 48 H 0.04 0.99 8.14 -2.38 -0.02 0.97 16 49 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 50 H 0.12 1.40 8.07 -2.39 -0.02 1.38 16 51 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 Total: -1.00 -73.30 406.28 -1.79 -75.09 By element: Atomic # 1 Polarization: 10.35 SS G_CDS: 0.90 Total: 11.25 kcal Atomic # 6 Polarization: -11.45 SS G_CDS: 7.61 Total: -3.84 kcal Atomic # 7 Polarization: -110.50 SS G_CDS: -11.59 Total: -122.08 kcal Atomic # 8 Polarization: -6.74 SS G_CDS: -0.75 Total: -7.49 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.06 kcal Total: -73.30 -1.79 -75.09 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589821969.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.371 kcal (2) G-P(sol) polarization free energy of solvation -73.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.093 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds