Wall clock time and date at job start Tue Mar 31 2020 21:42:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.99508 * 2 1 4 4 C 1.54320 * 109.88340 * 238.90814 * 2 1 3 5 5 C 1.55159 * 103.10012 * 262.86494 * 4 2 1 6 6 H 1.08997 * 111.00620 * 82.51655 * 5 4 2 7 7 C 1.52998 * 111.00474 * 206.33212 * 5 4 2 8 8 N 1.46904 * 109.47230 * 184.99618 * 7 5 4 9 9 C 1.54914 * 101.58234 * 324.40489 * 5 4 2 10 10 N 1.47432 * 104.82858 * 37.00796 * 9 5 4 11 11 C 1.34779 * 125.64437 * 155.90931 * 10 9 5 12 12 O 1.21346 * 119.99712 * 179.97438 * 11 10 9 13 13 C 1.49445 * 120.00060 * 359.97438 * 11 10 9 14 14 O 1.21348 * 120.00545 * 6.77911 * 13 11 10 15 15 N 1.34783 * 120.00025 * 186.78716 * 13 11 10 16 16 C 1.47084 * 120.87788 * 7.87327 * 15 13 11 17 17 C 1.53699 * 108.27461 * 128.76063 * 16 15 13 18 18 N 1.46892 * 109.25741 * 54.07934 * 17 16 15 19 19 C 1.46898 * 111.00205 * 172.60653 * 18 17 16 20 20 C 1.50696 * 109.47183 * 294.30786 * 19 18 17 21 21 H 1.07998 * 120.00463 * 359.97438 * 20 19 18 22 22 C 1.37884 * 119.99856 * 179.97438 * 20 19 18 23 23 N 1.31517 * 119.99536 * 179.97438 * 22 20 19 24 24 Si 1.86792 * 120.00122 * 359.97438 * 22 20 19 25 25 H 1.48502 * 109.47352 * 89.99761 * 24 22 20 26 26 H 1.48497 * 109.47216 * 209.99808 * 24 22 20 27 27 H 1.48505 * 109.47389 * 329.99921 * 24 22 20 28 28 C 1.46904 * 111.27383 * 296.76089 * 18 17 16 29 29 C 1.47075 * 120.88474 * 188.16128 * 15 13 11 30 30 H 1.09000 * 109.46945 * 181.09853 * 1 2 3 31 31 H 1.09001 * 109.46768 * 301.09845 * 1 2 3 32 32 H 1.08995 * 109.47127 * 61.09312 * 1 2 3 33 33 H 1.08993 * 110.72356 * 144.41239 * 4 2 1 34 34 H 1.09003 * 110.72152 * 21.30971 * 4 2 1 35 35 H 1.08997 * 109.47200 * 304.99744 * 7 5 4 36 36 H 1.09003 * 109.46905 * 64.99667 * 7 5 4 37 37 H 1.00901 * 110.99511 * 180.02562 * 8 7 5 38 38 H 1.00897 * 110.99718 * 303.95664 * 8 7 5 39 39 H 1.09000 * 110.36813 * 155.84805 * 9 5 4 40 40 H 1.08997 * 110.36595 * 278.06939 * 9 5 4 41 41 H 1.08993 * 109.62795 * 248.52630 * 16 15 13 42 42 H 1.08999 * 109.62858 * 9.11057 * 16 15 13 43 43 H 1.09005 * 109.64449 * 294.07790 * 17 16 15 44 44 H 1.08999 * 109.44472 * 173.96548 * 17 16 15 45 45 H 1.09005 * 109.46822 * 54.30657 * 19 18 17 46 46 H 1.09001 * 109.47539 * 174.30000 * 19 18 17 47 47 H 0.97002 * 119.99489 * 180.02562 * 23 22 20 48 48 H 1.09004 * 109.48888 * 303.14073 * 28 18 17 49 49 H 1.08992 * 109.51446 * 183.07855 * 28 18 17 50 50 H 1.09009 * 109.62564 * 350.89016 * 29 15 13 51 51 H 1.08993 * 109.63466 * 111.27510 * 29 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0548 -0.7494 -1.2427 5 6 2.3510 -2.1713 -0.6969 6 1 1.4438 -2.7747 -0.6659 7 6 3.4370 -2.8614 -1.5247 8 7 3.6060 -4.2433 -1.0560 9 6 2.8584 -1.8563 0.7325 10 7 2.0336 -0.7208 1.1840 11 6 1.7813 -0.3946 2.4671 12 8 1.0857 0.5661 2.7233 13 6 2.3581 -1.2160 3.5743 14 8 3.1512 -2.0999 3.3245 15 7 1.9975 -0.9753 4.8505 16 6 0.9146 -0.0304 5.1635 17 6 -0.0790 -0.7305 6.1042 18 7 0.6445 -1.2536 7.2706 19 6 -0.2884 -1.7758 8.2781 20 6 -1.1112 -0.6431 8.8357 21 1 -0.9564 0.3641 8.4778 22 6 -2.0618 -0.8925 9.8028 23 7 -2.7795 0.0961 10.2897 24 14 -2.3301 -2.6345 10.4214 25 1 -1.4405 -2.8900 11.5827 26 1 -3.7462 -2.7996 10.8369 27 1 -2.0169 -3.5989 9.3364 28 6 1.6212 -2.2778 6.8766 29 6 2.6804 -1.6457 5.9673 30 1 -0.3633 -1.0275 0.0197 31 1 -0.3633 0.5308 0.8800 32 1 -0.3633 0.4967 -0.8996 33 1 2.9656 -0.2831 -1.6182 34 1 1.2928 -0.7863 -2.0213 35 1 3.1448 -2.8670 -2.5748 36 1 4.3774 -2.3219 -1.4121 37 1 4.3188 -4.7206 -1.5873 38 1 3.8140 -4.2675 -0.0690 39 1 2.7104 -2.7163 1.3857 40 1 3.9115 -1.5762 0.7080 41 1 1.3281 0.8512 5.6531 42 1 0.4068 0.2620 4.2444 43 1 -0.5644 -1.5528 5.5784 44 1 -0.8321 -0.0149 6.4341 45 1 -0.9477 -2.5108 7.8164 46 1 0.2738 -2.2476 9.0840 47 1 -3.4480 -0.0793 10.9704 48 1 1.1122 -3.0785 6.3401 49 1 2.1016 -2.6843 7.7666 50 1 3.3407 -2.4217 5.5799 51 1 3.2631 -0.9169 6.5307 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601580208.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:42:19 Heat of formation + Delta-G solvation = -58.862708 kcal Electronic energy + Delta-G solvation = -30739.027867 eV Core-core repulsion = 26673.117360 eV Total energy + Delta-G solvation = -4065.910508 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.22536 -40.60741 -39.08390 -39.03993 -36.19323 -35.63307 -34.43995 -32.97460 -32.25320 -31.54850 -30.62284 -28.01751 -26.87728 -26.38736 -25.35772 -24.64751 -23.38058 -22.44047 -21.53717 -20.94931 -20.17704 -18.97220 -18.39979 -18.19566 -17.51208 -17.11199 -16.80544 -16.56500 -16.22634 -16.07492 -15.88395 -15.63321 -15.55393 -15.18702 -15.04080 -14.82053 -14.65656 -14.48475 -14.24038 -14.14257 -13.77715 -13.51430 -13.37813 -13.19299 -13.12929 -12.90190 -12.84393 -12.62031 -12.46822 -12.28939 -12.18157 -12.03196 -11.86845 -11.69815 -11.61621 -11.59723 -11.43469 -10.78642 -10.29568 -10.04606 -9.83126 -9.57716 -9.11728 -8.28704 -6.32340 0.24036 1.10472 1.34537 1.35878 1.46107 1.99304 2.19863 2.33664 2.97416 3.03257 3.13292 3.36803 3.58410 3.68565 3.87989 3.96840 3.97258 4.11786 4.14305 4.23638 4.27616 4.33619 4.34518 4.40057 4.52278 4.64103 4.67300 4.72692 4.75554 4.78566 4.81247 4.82701 4.87383 4.91888 4.96453 4.97119 5.05018 5.10025 5.18619 5.25949 5.29161 5.40073 5.50446 5.85034 6.00108 6.11969 6.24856 6.25820 6.48391 6.58221 6.59004 6.73857 6.82028 7.31065 8.87619 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.018904 B = 0.002519 C = 0.002400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1480.794028 B =11111.872641 C =11662.740045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.125 3.875 3 H 0.083 0.917 4 C -0.111 4.111 5 C -0.095 4.095 6 H 0.083 0.917 7 C 0.078 3.922 8 N -0.865 5.865 9 C 0.102 3.898 10 N -0.583 5.583 11 C 0.516 3.484 12 O -0.529 6.529 13 C 0.506 3.494 14 O -0.535 6.535 15 N -0.580 5.580 16 C 0.095 3.905 17 C 0.056 3.944 18 N -0.541 5.541 19 C 0.172 3.828 20 C -0.517 4.517 21 H 0.041 0.959 22 C 0.009 3.991 23 N -0.946 5.946 24 Si 0.947 3.053 25 H -0.263 1.263 26 H -0.283 1.283 27 H -0.254 1.254 28 C 0.040 3.960 29 C 0.121 3.879 30 H 0.054 0.946 31 H 0.045 0.955 32 H 0.093 0.907 33 H 0.096 0.904 34 H 0.107 0.893 35 H 0.089 0.911 36 H 0.040 0.960 37 H 0.351 0.649 38 H 0.342 0.658 39 H 0.080 0.920 40 H 0.076 0.924 41 H 0.074 0.926 42 H 0.135 0.865 43 H 0.020 0.980 44 H 0.074 0.926 45 H -0.015 1.015 46 H 0.035 0.965 47 H 0.267 0.733 48 H 0.026 0.974 49 H 0.100 0.900 50 H 0.107 0.893 51 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.925 -6.104 -27.517 31.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.024 3.976 3 H 0.101 0.899 4 C -0.149 4.149 5 C -0.114 4.114 6 H 0.102 0.898 7 C -0.053 4.053 8 N -0.395 5.395 9 C -0.019 4.019 10 N -0.316 5.316 11 C 0.300 3.700 12 O -0.407 6.407 13 C 0.289 3.711 14 O -0.413 6.413 15 N -0.312 5.312 16 C -0.027 4.027 17 C -0.073 4.073 18 N -0.265 5.265 19 C 0.045 3.955 20 C -0.555 4.555 21 H 0.059 0.941 22 C -0.189 4.189 23 N -0.587 5.587 24 Si 0.770 3.230 25 H -0.188 1.188 26 H -0.209 1.209 27 H -0.178 1.178 28 C -0.088 4.088 29 C -0.001 4.001 30 H 0.073 0.927 31 H 0.064 0.936 32 H 0.111 0.889 33 H 0.115 0.885 34 H 0.126 0.874 35 H 0.107 0.893 36 H 0.058 0.942 37 H 0.165 0.835 38 H 0.154 0.846 39 H 0.099 0.901 40 H 0.095 0.905 41 H 0.092 0.908 42 H 0.152 0.848 43 H 0.039 0.961 44 H 0.092 0.908 45 H 0.002 0.998 46 H 0.053 0.947 47 H 0.076 0.924 48 H 0.045 0.955 49 H 0.118 0.882 50 H 0.125 0.875 51 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 14.342 -5.717 -27.336 31.395 hybrid contribution -0.145 -0.630 1.087 1.264 sum 14.197 -6.346 -26.249 30.509 Atomic orbital electron populations 1.22127 0.94236 1.02283 1.03261 1.22044 0.95155 0.96689 0.83760 0.89923 1.22771 1.03421 0.93358 0.95358 1.22428 0.99868 0.96478 0.92660 0.89815 1.21693 0.96188 0.88158 0.99267 1.58739 1.55178 1.16334 1.09285 1.22753 0.94589 0.88363 0.96235 1.48622 1.48709 1.30376 1.03914 1.19815 0.81610 0.85085 0.83490 1.90539 1.38742 1.29412 1.82056 1.20113 0.82819 0.84158 0.83967 1.90665 1.35844 1.31755 1.83029 1.48164 1.35164 1.42899 1.04997 1.22865 0.87323 0.90836 1.01630 1.22394 0.95972 0.98625 0.90320 1.61845 1.17830 1.35495 1.11362 1.19945 0.90535 0.93969 0.91020 1.21234 1.18141 0.94736 1.21400 0.94066 1.25828 0.95188 1.01501 0.96344 1.70049 1.24642 1.33888 1.30085 0.85721 0.77741 0.79981 0.79511 1.18751 1.20863 1.17815 1.22530 0.94187 0.92701 0.99406 1.21916 0.94335 0.98121 0.85723 0.92707 0.93603 0.88862 0.88507 0.87416 0.89290 0.94224 0.83502 0.84587 0.90137 0.90532 0.90795 0.84799 0.96148 0.90753 0.99771 0.94683 0.92413 0.95531 0.88163 0.87459 0.89380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.69 9.06 71.98 0.65 -2.04 16 2 C 0.12 1.95 3.52 45.25 0.16 2.11 16 3 H 0.08 1.31 8.14 -2.38 -0.02 1.29 16 4 C -0.11 -0.95 5.95 31.78 0.19 -0.76 16 5 C -0.09 -1.08 3.25 -9.40 -0.03 -1.11 16 6 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 7 C 0.08 0.66 6.29 86.30 0.54 1.20 16 8 N -0.86 -9.03 9.62 -186.71 -1.80 -10.83 16 9 C 0.10 1.74 4.91 86.86 0.43 2.17 16 10 N -0.58 -12.35 3.09 -788.51 -2.44 -14.79 16 11 C 0.52 14.30 7.56 87.27 0.66 14.96 16 12 O -0.53 -16.56 12.13 -3.23 -0.04 -16.60 16 13 C 0.51 14.91 7.69 87.27 0.67 15.58 16 14 O -0.53 -15.82 13.36 -3.24 -0.04 -15.86 16 15 N -0.58 -17.85 3.00 -818.63 -2.46 -20.31 16 16 C 0.10 3.21 6.14 86.50 0.53 3.74 16 17 C 0.06 2.22 5.47 86.54 0.47 2.70 16 18 N -0.54 -22.38 4.62 -898.89 -4.15 -26.53 16 19 C 0.17 8.24 3.79 85.56 0.32 8.57 16 20 C -0.52 -29.82 8.96 25.60 0.23 -29.59 16 21 H 0.04 2.65 7.37 -2.91 -0.02 2.62 16 22 C 0.01 0.52 5.47 84.66 0.46 0.98 16 23 N -0.95 -59.18 13.96 21.45 0.30 -58.88 16 24 Si 0.95 44.04 27.47 68.60 1.88 45.93 16 25 H -0.26 -11.64 7.11 99.48 0.71 -10.93 16 26 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 27 H -0.25 -11.14 6.54 99.48 0.65 -10.49 16 28 C 0.04 1.31 5.62 86.38 0.49 1.80 16 29 C 0.12 3.41 6.61 86.35 0.57 3.98 16 30 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.04 1.04 6.80 -2.39 -0.02 1.03 16 32 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.10 0.54 8.04 -2.39 -0.02 0.52 16 34 H 0.11 0.57 7.83 -2.39 -0.02 0.55 16 35 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 36 H 0.04 0.28 7.96 -2.39 -0.02 0.26 16 37 H 0.35 2.49 9.08 -89.69 -0.81 1.68 16 38 H 0.34 3.90 8.49 -89.70 -0.76 3.14 16 39 H 0.08 1.69 6.35 -2.39 -0.02 1.68 16 40 H 0.08 1.22 7.90 -2.39 -0.02 1.20 16 41 H 0.07 2.54 8.14 -2.39 -0.02 2.52 16 42 H 0.14 4.52 4.44 -38.37 -0.17 4.35 16 43 H 0.02 0.81 8.14 -2.38 -0.02 0.79 16 44 H 0.07 3.38 6.67 -2.39 -0.02 3.36 16 45 H -0.02 -0.75 7.18 -2.38 -0.02 -0.76 16 46 H 0.04 1.62 7.40 -2.39 -0.02 1.60 16 47 H 0.27 15.56 8.31 -92.71 -0.77 14.79 16 48 H 0.03 0.88 8.14 -2.38 -0.02 0.86 16 49 H 0.10 2.93 7.99 -2.39 -0.02 2.91 16 50 H 0.11 2.72 7.05 -2.38 -0.02 2.70 16 51 H 0.09 2.37 8.14 -2.39 -0.02 2.35 16 Total: -1.00 -70.83 390.43 -3.24 -74.07 By element: Atomic # 1 Polarization: 20.34 SS G_CDS: -0.84 Total: 19.50 kcal Atomic # 6 Polarization: 17.95 SS G_CDS: 6.35 Total: 24.30 kcal Atomic # 7 Polarization: -120.78 SS G_CDS: -10.55 Total: -131.33 kcal Atomic # 8 Polarization: -32.38 SS G_CDS: -0.08 Total: -32.46 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 1.88 Total: 45.93 kcal Total: -70.83 -3.24 -74.07 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601580208.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.205 kcal (2) G-P(sol) polarization free energy of solvation -70.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds