Wall clock time and date at job start Tue Mar 31 2020 21:42:37
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53003 * 1
3 3 H 1.08998 * 109.86957 * 2 1
4 4 C 1.54319 * 109.88183 * 121.17123 * 2 1 3
5 5 C 1.55154 * 102.94109 * 141.61382 * 4 2 1
6 6 H 1.08996 * 111.00659 * 82.60908 * 5 4 2
7 7 C 1.53002 * 111.00583 * 206.42574 * 5 4 2
8 8 N 1.46906 * 109.47012 * 184.99910 * 7 5 4
9 9 C 1.55131 * 101.48626 * 324.33194 * 5 4 2
10 10 N 1.47018 * 109.88304 * 238.98610 * 2 1 3
11 11 C 1.34768 * 125.65240 * 61.60122 * 10 2 1
12 12 O 1.21351 * 120.00016 * 359.97438 * 11 10 2
13 13 C 1.49456 * 120.00368 * 180.02562 * 11 10 2
14 14 O 1.21347 * 119.99452 * 353.11973 * 13 11 10
15 15 N 1.34771 * 120.00301 * 173.12751 * 13 11 10
16 16 C 1.47081 * 120.87933 * 353.78535 * 15 13 11
17 17 C 1.53233 * 108.52087 * 128.80083 * 16 15 13
18 18 N 1.46904 * 109.36548 * 53.81374 * 17 16 15
19 19 C 1.46896 * 110.99881 * 172.76088 * 18 17 16
20 20 C 1.50705 * 109.47181 * 72.58025 * 19 18 17
21 21 H 1.07998 * 119.99431 * 4.47944 * 20 19 18
22 22 C 1.37880 * 119.99821 * 184.48451 * 20 19 18
23 23 N 1.31509 * 119.99964 * 359.97438 * 22 20 19
24 24 Si 1.86795 * 119.99502 * 179.97438 * 22 20 19
25 25 H 1.48496 * 109.47697 * 359.97438 * 24 22 20
26 26 H 1.48505 * 109.46971 * 120.00202 * 24 22 20
27 27 H 1.48505 * 109.46975 * 239.99761 * 24 22 20
28 28 C 1.46894 * 111.26716 * 296.94212 * 18 17 16
29 29 C 1.47076 * 120.88374 * 173.76953 * 15 13 11
30 30 H 1.09008 * 109.46852 * 179.56450 * 1 2 3
31 31 H 1.08997 * 109.47310 * 299.56119 * 1 2 3
32 32 H 1.08998 * 109.47603 * 59.56761 * 1 2 3
33 33 H 1.09003 * 110.72027 * 259.97337 * 4 2 1
34 34 H 1.08994 * 110.72606 * 23.07561 * 4 2 1
35 35 H 1.09000 * 109.47026 * 304.99735 * 7 5 4
36 36 H 1.08998 * 109.47279 * 64.99645 * 7 5 4
37 37 H 1.00898 * 110.99830 * 56.04391 * 8 7 5
38 38 H 1.00904 * 110.99490 * 179.97438 * 8 7 5
39 39 H 1.08998 * 110.49896 * 278.45268 * 9 5 4
40 40 H 1.09003 * 110.34608 * 156.05579 * 9 5 4
41 41 H 1.09004 * 109.63166 * 9.08715 * 16 15 13
42 42 H 1.09000 * 109.78969 * 248.60501 * 16 15 13
43 43 H 1.09000 * 109.49907 * 173.78941 * 17 16 15
44 44 H 1.09005 * 109.49286 * 293.84389 * 17 16 15
45 45 H 1.09007 * 109.46688 * 192.57114 * 19 18 17
46 46 H 1.08992 * 109.47503 * 312.57556 * 19 18 17
47 47 H 0.97001 * 119.99533 * 179.97438 * 23 22 20
48 48 H 1.08999 * 109.47073 * 303.09740 * 28 18 17
49 49 H 1.08998 * 109.50990 * 183.04958 * 28 18 17
50 50 H 1.09005 * 109.62387 * 350.91486 * 29 15 13
51 51 H 1.09001 * 109.63046 * 111.29407 * 29 15 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.9005 1.0251 0.0000
4 6 2.0548 -0.7511 1.2417
5 6 3.2876 -1.5150 0.6904
6 1 4.1656 -0.8698 0.6598
7 6 3.5650 -2.7750 1.5129
8 7 4.8042 -3.4061 1.0392
9 6 2.8100 -1.8814 -0.7394
10 7 2.0300 -0.7124 -1.1849
11 6 1.8074 -0.3586 -2.4661
12 8 1.1424 0.6249 -2.7173
13 6 2.3786 -1.1783 -3.5778
14 8 3.1438 -2.0869 -3.3302
15 7 2.0438 -0.9081 -4.8550
16 6 1.0170 0.0968 -5.1699
17 6 1.5915 1.0727 -6.2021
18 7 2.0972 0.3185 -7.3569
19 6 2.4994 1.2236 -8.4417
20 6 3.7787 1.9244 -8.0630
21 1 4.2848 1.6654 -7.1447
22 6 4.3030 2.8962 -8.8887
23 7 3.6869 3.2112 -10.0070
24 14 5.8883 3.7651 -8.4189
25 1 6.3794 3.2326 -7.1226
26 1 6.9111 3.5316 -9.4700
27 1 5.6345 5.2227 -8.2903
28 6 3.2042 -0.5670 -6.9716
29 6 2.6958 -1.6101 -5.9709
30 1 -0.3633 -1.0277 -0.0078
31 1 -0.3634 0.5070 0.8939
32 1 -0.3634 0.5205 -0.8860
33 1 2.3529 -0.0486 2.0200
34 1 1.3041 -1.4458 1.6181
35 1 3.6728 -2.5064 2.5638
36 1 2.7355 -3.4729 1.3995
37 1 5.5763 -2.7575 1.0737
38 1 5.0096 -4.2409 1.5674
39 1 2.1803 -2.7708 -0.7153
40 1 3.6656 -2.0391 -1.3960
41 1 0.7458 0.6394 -4.2642
42 1 0.1346 -0.3935 -5.5810
43 1 0.8096 1.7580 -6.5295
44 1 2.4069 1.6394 -5.7525
45 1 2.6564 0.6492 -9.3547
46 1 1.7157 1.9627 -8.6076
47 1 4.0555 3.8951 -10.5878
48 1 3.9974 0.0222 -6.5114
49 1 3.5922 -1.0709 -7.8568
50 1 3.5345 -2.1961 -5.5948
51 1 1.9777 -2.2697 -6.4582
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000601580210.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 21:42:37
Heat of formation + Delta-G solvation = -32.676894 kcal
Electronic energy + Delta-G solvation = -30919.221310 eV
Core-core repulsion = 26854.446305 eV
Total energy + Delta-G solvation = -4064.775005 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 338.211 amu
Computer time = 3.41 seconds
Orbital eigenvalues (eV)
-41.05578 -39.43629 -37.96311 -37.51165 -35.23280 -34.35183 -32.30575 -32.00894
-31.08443 -30.60497 -28.34178 -26.23078 -25.96093 -25.17525 -24.30759 -22.98842
-22.23723 -21.14331 -20.86913 -19.76744 -18.83118 -17.35502 -17.05835 -16.54164
-16.24938 -16.10228 -15.62186 -15.25885 -15.02209 -14.79267 -14.56753 -14.33933
-14.19438 -14.05473 -13.82408 -13.59691 -13.34959 -13.05563 -12.97319 -12.75127
-12.61862 -12.43298 -12.14615 -11.80872 -11.79589 -11.49768 -11.25273 -11.12255
-11.09551 -11.03867 -10.99591 -10.73035 -10.60091 -10.41133 -10.15777 -9.89041
-9.57973 -9.09267 -8.99034 -8.75600 -8.46919 -8.42002 -7.19704 -6.03745
-4.12804 1.50353 2.27289 3.26404 3.29138 3.34560 3.38798 3.43861
3.91173 4.07873 4.32696 4.40562 4.40607 4.55177 4.78141 4.90792
4.94981 5.03678 5.11868 5.18779 5.26188 5.27079 5.39460 5.43730
5.47755 5.48672 5.60284 5.71261 5.75707 5.84865 5.87662 5.89828
5.96413 5.99234 6.08106 6.11528 6.35428 6.51921 6.68098 6.69331
6.70677 6.78574 7.02534 7.11449 7.24940 7.47873 7.52371 7.76980
7.89145 8.00972 8.11628 8.22273 8.30624 8.97562 9.54576 11.01475
Molecular weight = 338.21amu
Principal moments of inertia in cm(-1)
A = 0.014876 B = 0.002750 C = 0.002677
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1881.762988 B =10180.957502 C =10457.364533
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.164 4.164
2 C 0.132 3.868
3 H 0.081 0.919
4 C -0.123 4.123
5 C -0.104 4.104
6 H 0.085 0.915
7 C 0.075 3.925
8 N -0.849 5.849
9 C 0.110 3.890
10 N -0.590 5.590
11 C 0.526 3.474
12 O -0.507 6.507
13 C 0.505 3.495
14 O -0.528 6.528
15 N -0.568 5.568
16 C 0.054 3.946
17 C 0.054 3.946
18 N -0.543 5.543
19 C 0.187 3.813
20 C -0.551 4.551
21 H 0.058 0.942
22 C 0.065 3.935
23 N -0.890 5.890
24 Si 0.888 3.112
25 H -0.274 1.274
26 H -0.283 1.283
27 H -0.283 1.283
28 C 0.051 3.949
29 C 0.111 3.889
30 H 0.057 0.943
31 H 0.066 0.934
32 H 0.073 0.927
33 H 0.083 0.917
34 H 0.081 0.919
35 H 0.031 0.969
36 H 0.075 0.925
37 H 0.342 0.658
38 H 0.343 0.657
39 H 0.070 0.930
40 H 0.111 0.889
41 H 0.149 0.851
42 H 0.065 0.935
43 H 0.077 0.923
44 H 0.039 0.961
45 H 0.030 0.970
46 H 0.034 0.966
47 H 0.262 0.738
48 H 0.045 0.955
49 H 0.081 0.919
50 H 0.088 0.912
51 H 0.073 0.927
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.029 -11.253 25.053 27.758
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.222 4.222
2 C 0.029 3.971
3 H 0.099 0.901
4 C -0.162 4.162
5 C -0.124 4.124
6 H 0.103 0.897
7 C -0.056 4.056
8 N -0.379 5.379
9 C -0.012 4.012
10 N -0.324 5.324
11 C 0.311 3.689
12 O -0.384 6.384
13 C 0.287 3.713
14 O -0.406 6.406
15 N -0.300 5.300
16 C -0.067 4.067
17 C -0.075 4.075
18 N -0.267 5.267
19 C 0.062 3.938
20 C -0.590 4.590
21 H 0.076 0.924
22 C -0.137 4.137
23 N -0.529 5.529
24 Si 0.716 3.284
25 H -0.199 1.199
26 H -0.209 1.209
27 H -0.209 1.209
28 C -0.078 4.078
29 C -0.011 4.011
30 H 0.076 0.924
31 H 0.085 0.915
32 H 0.092 0.908
33 H 0.101 0.899
34 H 0.099 0.901
35 H 0.049 0.951
36 H 0.094 0.906
37 H 0.154 0.846
38 H 0.155 0.845
39 H 0.089 0.911
40 H 0.129 0.871
41 H 0.165 0.835
42 H 0.084 0.916
43 H 0.096 0.904
44 H 0.057 0.943
45 H 0.048 0.952
46 H 0.052 0.948
47 H 0.071 0.929
48 H 0.063 0.937
49 H 0.099 0.901
50 H 0.106 0.894
51 H 0.092 0.908
Dipole moment (debyes) X Y Z Total
from point charges -4.767 -11.450 23.907 26.933
hybrid contribution 1.959 1.367 1.222 2.683
sum -2.808 -10.083 25.129 27.222
Atomic orbital electron populations
1.22158 0.94255 1.02467 1.03310 1.21675 0.95007 0.96618 0.83811
0.90091 1.22780 0.97520 0.99477 0.96408 1.22496 0.98099 0.96612
0.95146 0.89658 1.21697 0.93607 0.94952 0.95380 1.58652 1.05811
1.10731 1.62725 1.22719 0.96810 0.86867 0.94835 1.48446 1.51290
1.28513 1.04108 1.20060 0.80822 0.85259 0.82806 1.90343 1.39504
1.27728 1.80824 1.19800 0.82926 0.84568 0.83993 1.90680 1.36453
1.30481 1.82972 1.48084 1.38436 1.39285 1.04240 1.23429 0.89275
0.90373 1.03652 1.22200 0.99487 0.94683 0.91179 1.62512 1.33036
1.22329 1.08866 1.19768 0.94897 0.90412 0.88757 1.21821 1.09330
1.20915 1.06924 0.92387 1.24958 0.97247 0.96638 0.94890 1.69951
1.39309 1.31777 1.11841 0.86597 0.83703 0.79561 0.78524 1.19897
1.20876 1.20923 1.22244 0.93753 0.94370 0.97412 1.22031 0.97829
0.95135 0.86058 0.92410 0.91466 0.90836 0.89874 0.90061 0.95131
0.90619 0.84565 0.84486 0.91143 0.87079 0.83491 0.91616 0.90437
0.94267 0.95157 0.94793 0.92850 0.93687 0.90062 0.89390 0.90826
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -1.43 9.10 37.16 0.34 -1.09 16
2 C 0.13 1.22 3.46 -66.96 -0.23 0.99 16
3 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16
4 C -0.12 -0.77 5.94 -24.90 -0.15 -0.92 16
5 C -0.10 -0.76 3.21 -88.35 -0.28 -1.05 16
6 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16
7 C 0.07 0.44 6.25 -3.82 -0.02 0.42 16
8 N -0.85 -5.43 9.57 -10.36 -0.10 -5.53 16
9 C 0.11 1.17 5.61 -2.41 -0.01 1.15 16
10 N -0.59 -7.10 3.06 -163.38 -0.50 -7.60 16
11 C 0.53 7.93 7.60 -11.59 -0.09 7.84 16
12 O -0.51 -8.25 12.15 5.50 0.07 -8.18 16
13 C 0.51 8.38 7.71 -11.58 -0.09 8.29 16
14 O -0.53 -9.16 13.25 5.50 0.07 -9.08 16
15 N -0.57 -9.71 3.01 -172.98 -0.52 -10.23 16
16 C 0.05 0.91 6.46 -3.60 -0.02 0.89 16
17 C 0.05 1.08 5.35 -3.70 -0.02 1.06 16
18 N -0.54 -11.76 4.83 -235.77 -1.14 -12.89 16
19 C 0.19 4.83 5.19 -4.98 -0.03 4.80 16
20 C -0.55 -15.28 7.88 -34.44 -0.27 -15.55 16
21 H 0.06 1.62 5.87 -52.49 -0.31 1.31 16
22 C 0.07 1.85 5.46 -17.82 -0.10 1.75 16
23 N -0.89 -26.29 13.29 55.43 0.74 -25.56 16
24 Si 0.89 21.76 29.54 -169.99 -5.02 16.74 16
25 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16
26 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16
27 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16
28 C 0.05 1.02 5.01 -3.71 -0.02 1.01 16
29 C 0.11 1.88 6.58 -3.61 -0.02 1.85 16
30 H 0.06 0.49 8.14 -51.92 -0.42 0.07 16
31 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16
32 H 0.07 0.81 6.88 -51.93 -0.36 0.46 16
33 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16
34 H 0.08 0.43 7.75 -51.93 -0.40 0.03 16
35 H 0.03 0.14 8.14 -51.93 -0.42 -0.28 16
36 H 0.08 0.46 7.96 -51.93 -0.41 0.04 16
37 H 0.34 1.93 8.99 -39.29 -0.35 1.58 16
38 H 0.34 1.62 9.08 -39.29 -0.36 1.26 16
39 H 0.07 0.75 7.91 -51.93 -0.41 0.34 16
40 H 0.11 1.47 5.98 -51.93 -0.31 1.16 16
41 H 0.15 2.48 3.80 -56.63 -0.22 2.27 16
42 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16
43 H 0.08 1.53 7.96 -51.93 -0.41 1.11 16
44 H 0.04 0.88 7.62 -51.93 -0.40 0.48 16
45 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16
46 H 0.03 0.94 7.92 -51.93 -0.41 0.52 16
47 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16
48 H 0.04 1.00 6.27 -51.93 -0.33 0.68 16
49 H 0.08 1.59 8.11 -51.93 -0.42 1.17 16
50 H 0.09 1.43 7.11 -51.93 -0.37 1.07 16
51 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16
LS Contribution 391.61 15.07 5.90 5.90
Total: -1.00 -31.68 391.61 -9.93 -41.61
By element:
Atomic # 1 Polarization: 11.81 SS G_CDS: -8.40 Total: 3.40 kcal
Atomic # 6 Polarization: 12.46 SS G_CDS: -1.02 Total: 11.44 kcal
Atomic # 7 Polarization: -60.30 SS G_CDS: -1.52 Total: -61.82 kcal
Atomic # 8 Polarization: -17.41 SS G_CDS: 0.14 Total: -17.27 kcal
Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal
Total LS contribution 5.90 Total: 5.90 kcal
Total: -31.68 -9.93 -41.61 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000601580210.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 8.931 kcal
(2) G-P(sol) polarization free energy of solvation -31.683 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.752 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.925 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.608 kcal
(6) G-S(sol) free energy of system = (1) + (5) -32.677 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 3.41 seconds