Wall clock time and date at job start Tue Mar 31 2020 21:42:34
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53003 * 1
3 3 H 1.08998 * 109.86957 * 2 1
4 4 C 1.54319 * 109.88183 * 121.17123 * 2 1 3
5 5 C 1.55154 * 102.94109 * 141.61382 * 4 2 1
6 6 H 1.08996 * 111.00659 * 82.60908 * 5 4 2
7 7 C 1.53002 * 111.00583 * 206.42574 * 5 4 2
8 8 N 1.46906 * 109.47012 * 184.99910 * 7 5 4
9 9 C 1.55131 * 101.48626 * 324.33194 * 5 4 2
10 10 N 1.47018 * 109.88304 * 238.98610 * 2 1 3
11 11 C 1.34768 * 125.65240 * 61.60122 * 10 2 1
12 12 O 1.21351 * 120.00016 * 359.97438 * 11 10 2
13 13 C 1.49456 * 120.00368 * 180.02562 * 11 10 2
14 14 O 1.21347 * 119.99452 * 353.11973 * 13 11 10
15 15 N 1.34771 * 120.00301 * 173.12751 * 13 11 10
16 16 C 1.47081 * 120.87933 * 353.78535 * 15 13 11
17 17 C 1.53233 * 108.52087 * 128.80083 * 16 15 13
18 18 N 1.46904 * 109.36548 * 53.81374 * 17 16 15
19 19 C 1.46896 * 110.99881 * 172.76088 * 18 17 16
20 20 C 1.50705 * 109.47181 * 72.58025 * 19 18 17
21 21 H 1.07998 * 119.99431 * 4.47944 * 20 19 18
22 22 C 1.37880 * 119.99821 * 184.48451 * 20 19 18
23 23 N 1.31509 * 119.99964 * 359.97438 * 22 20 19
24 24 Si 1.86795 * 119.99502 * 179.97438 * 22 20 19
25 25 H 1.48496 * 109.47697 * 359.97438 * 24 22 20
26 26 H 1.48505 * 109.46971 * 120.00202 * 24 22 20
27 27 H 1.48505 * 109.46975 * 239.99761 * 24 22 20
28 28 C 1.46894 * 111.26716 * 296.94212 * 18 17 16
29 29 C 1.47076 * 120.88374 * 173.76953 * 15 13 11
30 30 H 1.09008 * 109.46852 * 179.56450 * 1 2 3
31 31 H 1.08997 * 109.47310 * 299.56119 * 1 2 3
32 32 H 1.08998 * 109.47603 * 59.56761 * 1 2 3
33 33 H 1.09003 * 110.72027 * 259.97337 * 4 2 1
34 34 H 1.08994 * 110.72606 * 23.07561 * 4 2 1
35 35 H 1.09000 * 109.47026 * 304.99735 * 7 5 4
36 36 H 1.08998 * 109.47279 * 64.99645 * 7 5 4
37 37 H 1.00898 * 110.99830 * 56.04391 * 8 7 5
38 38 H 1.00904 * 110.99490 * 179.97438 * 8 7 5
39 39 H 1.08998 * 110.49896 * 278.45268 * 9 5 4
40 40 H 1.09003 * 110.34608 * 156.05579 * 9 5 4
41 41 H 1.09004 * 109.63166 * 9.08715 * 16 15 13
42 42 H 1.09000 * 109.78969 * 248.60501 * 16 15 13
43 43 H 1.09000 * 109.49907 * 173.78941 * 17 16 15
44 44 H 1.09005 * 109.49286 * 293.84389 * 17 16 15
45 45 H 1.09007 * 109.46688 * 192.57114 * 19 18 17
46 46 H 1.08992 * 109.47503 * 312.57556 * 19 18 17
47 47 H 0.97001 * 119.99533 * 179.97438 * 23 22 20
48 48 H 1.08999 * 109.47073 * 303.09740 * 28 18 17
49 49 H 1.08998 * 109.50990 * 183.04958 * 28 18 17
50 50 H 1.09005 * 109.62387 * 350.91486 * 29 15 13
51 51 H 1.09001 * 109.63046 * 111.29407 * 29 15 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.9005 1.0251 0.0000
4 6 2.0548 -0.7511 1.2417
5 6 3.2876 -1.5150 0.6904
6 1 4.1656 -0.8698 0.6598
7 6 3.5650 -2.7750 1.5129
8 7 4.8042 -3.4061 1.0392
9 6 2.8100 -1.8814 -0.7394
10 7 2.0300 -0.7124 -1.1849
11 6 1.8074 -0.3586 -2.4661
12 8 1.1424 0.6249 -2.7173
13 6 2.3786 -1.1783 -3.5778
14 8 3.1438 -2.0869 -3.3302
15 7 2.0438 -0.9081 -4.8550
16 6 1.0170 0.0968 -5.1699
17 6 1.5915 1.0727 -6.2021
18 7 2.0972 0.3185 -7.3569
19 6 2.4994 1.2236 -8.4417
20 6 3.7787 1.9244 -8.0630
21 1 4.2848 1.6654 -7.1447
22 6 4.3030 2.8962 -8.8887
23 7 3.6869 3.2112 -10.0070
24 14 5.8883 3.7651 -8.4189
25 1 6.3794 3.2326 -7.1226
26 1 6.9111 3.5316 -9.4700
27 1 5.6345 5.2227 -8.2903
28 6 3.2042 -0.5670 -6.9716
29 6 2.6958 -1.6101 -5.9709
30 1 -0.3633 -1.0277 -0.0078
31 1 -0.3634 0.5070 0.8939
32 1 -0.3634 0.5205 -0.8860
33 1 2.3529 -0.0486 2.0200
34 1 1.3041 -1.4458 1.6181
35 1 3.6728 -2.5064 2.5638
36 1 2.7355 -3.4729 1.3995
37 1 5.5763 -2.7575 1.0737
38 1 5.0096 -4.2409 1.5674
39 1 2.1803 -2.7708 -0.7153
40 1 3.6656 -2.0391 -1.3960
41 1 0.7458 0.6394 -4.2642
42 1 0.1346 -0.3935 -5.5810
43 1 0.8096 1.7580 -6.5295
44 1 2.4069 1.6394 -5.7525
45 1 2.6564 0.6492 -9.3547
46 1 1.7157 1.9627 -8.6076
47 1 4.0555 3.8951 -10.5878
48 1 3.9974 0.0222 -6.5114
49 1 3.5922 -1.0709 -7.8568
50 1 3.5345 -2.1961 -5.5948
51 1 1.9777 -2.2697 -6.4582
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000601580210.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 21:42:34
Heat of formation + Delta-G solvation = -57.031681 kcal
Electronic energy + Delta-G solvation = -30920.277413 eV
Core-core repulsion = 26854.446305 eV
Total energy + Delta-G solvation = -4065.831108 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 338.211 amu
Computer time = 3.13 seconds
Orbital eigenvalues (eV)
-42.21345 -40.56033 -39.05624 -39.04267 -36.21713 -35.64740 -34.33267 -32.88878
-32.17379 -31.68623 -30.11217 -27.66323 -26.82347 -26.40174 -25.46823 -24.44422
-23.87902 -22.41078 -21.50237 -21.03583 -20.15323 -18.62034 -18.32082 -18.14288
-17.58522 -17.08212 -16.76462 -16.51093 -16.29319 -16.06621 -15.86489 -15.56158
-15.48011 -15.23622 -15.01003 -14.77810 -14.67927 -14.30349 -13.98341 -13.87586
-13.64616 -13.61477 -13.26300 -13.06845 -12.98961 -12.91546 -12.77707 -12.54505
-12.50859 -12.43479 -12.19258 -12.05646 -11.84430 -11.69563 -11.66931 -11.64864
-11.45586 -10.65397 -10.18211 -9.93400 -9.81422 -9.48662 -9.08938 -8.20185
-6.39197 0.26001 1.15006 1.31720 1.33286 1.44706 2.04004 2.26740
2.33411 3.01062 3.05144 3.29577 3.35618 3.60808 3.75877 3.96879
4.02892 4.07170 4.11837 4.27217 4.28458 4.31840 4.35847 4.49028
4.50388 4.58171 4.65238 4.71307 4.75923 4.78858 4.82983 4.91195
4.94999 4.98683 5.05641 5.07020 5.12440 5.15957 5.21779 5.29790
5.31452 5.36823 5.43473 5.70019 5.92830 6.01731 6.14974 6.24165
6.31229 6.41713 6.56069 6.65146 6.80565 6.85820 7.32398 8.82866
Molecular weight = 338.21amu
Principal moments of inertia in cm(-1)
A = 0.014876 B = 0.002750 C = 0.002677
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1881.762988 B =10180.957502 C =10457.364533
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.158 4.158
2 C 0.121 3.879
3 H 0.075 0.925
4 C -0.110 4.110
5 C -0.095 4.095
6 H 0.082 0.918
7 C 0.079 3.921
8 N -0.866 5.866
9 C 0.107 3.893
10 N -0.582 5.582
11 C 0.520 3.480
12 O -0.525 6.525
13 C 0.502 3.498
14 O -0.537 6.537
15 N -0.577 5.577
16 C 0.068 3.932
17 C 0.057 3.943
18 N -0.538 5.538
19 C 0.200 3.800
20 C -0.560 4.560
21 H 0.052 0.948
22 C 0.015 3.985
23 N -0.922 5.922
24 Si 0.955 3.045
25 H -0.274 1.274
26 H -0.274 1.274
27 H -0.276 1.276
28 C 0.056 3.944
29 C 0.122 3.878
30 H 0.061 0.939
31 H 0.092 0.908
32 H 0.046 0.954
33 H 0.107 0.893
34 H 0.098 0.902
35 H 0.052 0.948
36 H 0.076 0.924
37 H 0.345 0.655
38 H 0.351 0.649
39 H 0.073 0.927
40 H 0.083 0.917
41 H 0.155 0.845
42 H 0.082 0.918
43 H 0.077 0.923
44 H 0.011 0.989
45 H 0.010 0.990
46 H 0.011 0.989
47 H 0.266 0.734
48 H 0.018 0.982
49 H 0.082 0.918
50 H 0.095 0.905
51 H 0.093 0.907
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.918 -11.974 28.030 30.731
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.216 4.216
2 C 0.020 3.980
3 H 0.093 0.907
4 C -0.148 4.148
5 C -0.115 4.115
6 H 0.100 0.900
7 C -0.052 4.052
8 N -0.398 5.398
9 C -0.015 4.015
10 N -0.315 5.315
11 C 0.304 3.696
12 O -0.405 6.405
13 C 0.285 3.715
14 O -0.415 6.415
15 N -0.309 5.309
16 C -0.053 4.053
17 C -0.072 4.072
18 N -0.262 5.262
19 C 0.074 3.926
20 C -0.599 4.599
21 H 0.070 0.930
22 C -0.185 4.185
23 N -0.562 5.562
24 Si 0.780 3.220
25 H -0.199 1.199
26 H -0.199 1.199
27 H -0.202 1.202
28 C -0.074 4.074
29 C 0.000 4.000
30 H 0.080 0.920
31 H 0.111 0.889
32 H 0.065 0.935
33 H 0.125 0.875
34 H 0.117 0.883
35 H 0.070 0.930
36 H 0.095 0.905
37 H 0.157 0.843
38 H 0.165 0.835
39 H 0.091 0.909
40 H 0.102 0.898
41 H 0.171 0.829
42 H 0.100 0.900
43 H 0.096 0.904
44 H 0.029 0.971
45 H 0.028 0.972
46 H 0.029 0.971
47 H 0.075 0.925
48 H 0.036 0.964
49 H 0.100 0.900
50 H 0.114 0.886
51 H 0.111 0.889
Dipole moment (debyes) X Y Z Total
from point charges -4.649 -12.202 26.934 29.932
hybrid contribution 1.934 1.545 0.336 2.498
sum -2.715 -10.656 27.270 29.403
Atomic orbital electron populations
1.22111 0.93623 1.02639 1.03252 1.21997 0.95586 0.96599 0.83835
0.90692 1.22787 0.97045 0.99732 0.95203 1.22455 0.98421 0.97525
0.93081 0.89981 1.21670 0.93399 0.94076 0.96035 1.58661 1.06251
1.11431 1.63441 1.22764 0.95681 0.86548 0.96460 1.48589 1.50308
1.28724 1.03847 1.19783 0.81191 0.85078 0.83557 1.90313 1.40619
1.28406 1.81159 1.20158 0.82583 0.84534 0.84217 1.90679 1.36706
1.30906 1.83211 1.48158 1.38657 1.39452 1.04662 1.23319 0.89327
0.89856 1.02754 1.22210 0.98517 0.95363 0.91096 1.62463 1.33373
1.21584 1.08758 1.19443 0.93599 0.90074 0.89507 1.22015 1.09984
1.21258 1.06658 0.93034 1.25765 1.00539 0.97383 0.94804 1.70053
1.40913 1.32449 1.12778 0.85558 0.79728 0.78458 0.78240 1.19852
1.19894 1.20177 1.22232 0.92570 0.94394 0.98159 1.21911 0.98618
0.94077 0.85401 0.92030 0.88921 0.93521 0.87461 0.88319 0.93011
0.90515 0.84260 0.83496 0.90923 0.89832 0.82909 0.89995 0.90427
0.97104 0.97162 0.97100 0.92474 0.96410 0.89952 0.88631 0.88923
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -2.45 9.10 71.98 0.66 -1.80 16
2 C 0.12 2.02 3.46 45.34 0.16 2.17 16
3 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16
4 C -0.11 -0.99 5.94 31.78 0.19 -0.80 16
5 C -0.10 -1.17 3.21 -9.32 -0.03 -1.20 16
6 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16
7 C 0.08 0.71 6.25 86.30 0.54 1.25 16
8 N -0.87 -9.54 9.57 -186.70 -1.79 -11.33 16
9 C 0.11 2.16 5.61 86.93 0.49 2.64 16
10 N -0.58 -13.49 3.06 -789.18 -2.42 -15.91 16
11 C 0.52 15.58 7.60 87.27 0.66 16.24 16
12 O -0.53 -17.14 12.15 -3.25 -0.04 -17.18 16
13 C 0.50 16.58 7.71 87.27 0.67 17.25 16
14 O -0.54 -18.51 13.25 -3.24 -0.04 -18.55 16
15 N -0.58 -19.57 3.01 -819.54 -2.47 -22.04 16
16 C 0.07 2.31 6.46 86.35 0.56 2.86 16
17 C 0.06 2.35 5.35 86.38 0.46 2.82 16
18 N -0.54 -23.85 4.83 -899.85 -4.35 -28.19 16
19 C 0.20 10.73 5.19 85.56 0.44 11.17 16
20 C -0.56 -31.94 7.88 25.60 0.20 -31.74 16
21 H 0.05 2.97 5.87 -2.91 -0.02 2.95 16
22 C 0.01 0.86 5.46 84.66 0.46 1.32 16
23 N -0.92 -55.40 13.29 21.45 0.28 -55.11 16
24 Si 0.95 45.13 29.54 68.60 2.03 47.16 16
25 H -0.27 -12.81 7.11 99.48 0.71 -12.10 16
26 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16
27 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16
28 C 0.06 2.25 5.01 86.38 0.43 2.69 16
29 C 0.12 4.05 6.58 86.35 0.57 4.61 16
30 H 0.06 0.90 8.14 -2.38 -0.02 0.88 16
31 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16
32 H 0.05 0.99 6.88 -2.39 -0.02 0.98 16
33 H 0.11 0.55 8.14 -2.39 -0.02 0.53 16
34 H 0.10 0.62 7.75 -2.39 -0.02 0.60 16
35 H 0.05 0.29 8.14 -2.39 -0.02 0.27 16
36 H 0.08 0.70 7.96 -2.39 -0.02 0.68 16
37 H 0.34 3.37 8.99 -89.70 -0.81 2.57 16
38 H 0.35 2.69 9.08 -89.69 -0.81 1.88 16
39 H 0.07 1.44 7.91 -2.39 -0.02 1.42 16
40 H 0.08 2.20 5.98 -2.39 -0.01 2.18 16
41 H 0.15 5.16 3.80 -76.84 -0.29 4.87 16
42 H 0.08 2.52 8.14 -2.39 -0.02 2.50 16
43 H 0.08 3.14 7.96 -2.39 -0.02 3.12 16
44 H 0.01 0.50 7.62 -2.38 -0.02 0.48 16
45 H 0.01 0.59 8.14 -2.38 -0.02 0.57 16
46 H 0.01 0.62 7.92 -2.39 -0.02 0.60 16
47 H 0.27 14.99 8.31 -92.71 -0.77 14.22 16
48 H 0.02 0.81 6.27 -2.39 -0.01 0.80 16
49 H 0.08 3.28 8.11 -2.39 -0.02 3.26 16
50 H 0.10 3.05 7.11 -2.38 -0.02 3.04 16
51 H 0.09 2.76 8.14 -2.39 -0.02 2.74 16
Total: -1.00 -69.77 391.61 -3.28 -73.04
By element:
Atomic # 1 Polarization: 19.56 SS G_CDS: -0.95 Total: 18.61 kcal
Atomic # 6 Polarization: 23.03 SS G_CDS: 6.46 Total: 29.49 kcal
Atomic # 7 Polarization: -121.85 SS G_CDS: -10.73 Total: -132.58 kcal
Atomic # 8 Polarization: -35.64 SS G_CDS: -0.08 Total: -35.73 kcal
Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.16 kcal
Total: -69.77 -3.28 -73.04 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000601580210.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 16.011 kcal
(2) G-P(sol) polarization free energy of solvation -69.768 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.756 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.275 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.043 kcal
(6) G-S(sol) free energy of system = (1) + (5) -57.032 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 3.13 seconds