Wall clock time and date at job start Tue Mar 31 2020 22:00:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09000 * 109.49337 * 2 1 4 4 C 1.53246 * 109.49481 * 239.95153 * 2 1 3 5 5 N 1.47071 * 108.52412 * 186.21155 * 4 2 1 6 6 C 1.34774 * 120.88081 * 231.16037 * 5 4 2 7 7 O 1.21359 * 120.00139 * 175.24309 * 6 5 4 8 8 C 1.49448 * 120.00081 * 355.24780 * 6 5 4 9 9 O 1.21340 * 120.00318 * 274.04893 * 8 6 5 10 10 N 1.34782 * 119.99801 * 94.04963 * 8 6 5 11 11 C 1.47075 * 120.88381 * 4.72914 * 10 8 6 12 12 C 1.53688 * 108.27680 * 128.75621 * 11 10 8 13 13 N 1.46897 * 109.25997 * 54.08619 * 12 11 10 14 14 C 1.46900 * 111.00626 * 172.60926 * 13 12 11 15 15 C 1.50697 * 109.47132 * 51.77248 * 14 13 12 16 16 H 1.07997 * 119.99986 * 5.01083 * 15 14 13 17 17 C 1.37875 * 120.00214 * 185.01910 * 15 14 13 18 18 N 1.31517 * 119.99742 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 120.00267 * 180.02562 * 17 15 14 20 20 H 1.48504 * 109.47476 * 89.99600 * 19 17 15 21 21 H 1.48507 * 109.47300 * 209.99474 * 19 17 15 22 22 H 1.48503 * 109.47046 * 329.99512 * 19 17 15 23 23 C 1.46905 * 111.26348 * 296.75707 * 13 12 11 24 24 C 1.47079 * 120.87714 * 185.01200 * 10 8 6 25 25 C 1.47086 * 118.23925 * 51.18097 * 5 4 2 26 26 C 1.53237 * 108.51980 * 308.81744 * 25 5 4 27 27 H 1.08997 * 109.49298 * 293.83865 * 26 25 5 28 28 C 1.52998 * 109.49070 * 173.78910 * 26 25 5 29 29 N 1.46897 * 109.36537 * 53.81694 * 26 25 5 30 30 H 1.09001 * 109.47289 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.47188 * 300.05163 * 1 2 3 32 32 H 1.08998 * 109.47480 * 60.05064 * 1 2 3 33 33 H 1.09002 * 109.62866 * 66.49637 * 4 2 1 34 34 H 1.09008 * 109.78283 * 306.01453 * 4 2 1 35 35 H 1.09003 * 109.62978 * 248.52818 * 11 10 8 36 36 H 1.09007 * 109.62944 * 9.10189 * 11 10 8 37 37 H 1.09005 * 109.65050 * 294.08004 * 12 11 10 38 38 H 1.09007 * 109.44721 * 173.96018 * 12 11 10 39 39 H 1.08998 * 109.47078 * 171.77360 * 14 13 12 40 40 H 1.09005 * 109.46818 * 291.77596 * 14 13 12 41 41 H 0.97005 * 119.99941 * 180.02562 * 18 17 15 42 42 H 1.08994 * 109.49426 * 303.13896 * 23 13 12 43 43 H 1.09006 * 109.51359 * 183.07574 * 23 13 12 44 44 H 1.08993 * 109.63277 * 350.89057 * 24 10 8 45 45 H 1.09001 * 109.63023 * 111.28248 * 24 10 8 46 46 H 1.09004 * 109.63072 * 189.10821 * 25 5 4 47 47 H 1.09001 * 109.78657 * 68.62007 * 25 5 4 48 48 H 1.09001 * 109.47214 * 60.05615 * 28 26 25 49 49 H 1.08997 * 109.47527 * 300.05130 * 28 26 25 50 50 H 1.09008 * 109.47341 * 180.02562 * 28 26 25 51 51 H 1.00897 * 110.99880 * 61.05397 * 29 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8936 1.0275 0.0000 4 6 2.0413 -0.7234 -1.2505 5 7 3.5041 -0.8429 -1.1557 6 6 4.2976 -0.4489 -2.1714 7 8 5.5042 -0.4738 -2.0436 8 6 3.6916 0.0188 -3.4549 9 8 3.3962 -0.7848 -4.3147 10 7 3.4732 1.3333 -3.6575 11 6 3.9171 2.3327 -2.6740 12 6 4.7254 3.4106 -3.4134 13 7 3.9215 3.9445 -4.5209 14 6 4.5849 5.0969 -5.1453 15 6 6.0019 4.7284 -5.5019 16 1 6.3481 3.7151 -5.3610 17 6 6.8565 5.6847 -6.0078 18 7 6.4349 6.9186 -6.1797 19 14 8.6128 5.2277 -6.4504 20 1 8.6675 4.7862 -7.8672 21 1 9.4933 6.4093 -6.2659 22 1 9.0741 4.1244 -5.5699 23 6 3.6270 2.9041 -5.5154 24 6 2.7791 1.8058 -4.8650 25 6 4.0781 -1.4042 0.0767 26 6 3.4866 -0.6540 1.2748 27 1 3.8239 0.3823 1.2577 28 6 3.9485 -1.3197 2.5726 29 7 2.0202 -0.6936 1.1986 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5147 0.8896 32 1 -0.3634 0.5130 -0.8904 33 1 1.7776 -0.1497 -2.1390 34 1 1.5959 -1.7165 -1.3103 35 1 3.0491 2.7857 -2.1949 36 1 4.5449 1.8534 -1.9227 37 1 5.6434 2.9746 -3.8076 38 1 4.9730 4.2165 -2.7224 39 1 4.0452 5.3813 -6.0486 40 1 4.5918 5.9342 -4.4474 41 1 7.0360 7.5914 -6.5359 42 1 4.5602 2.4752 -5.8802 43 1 3.0777 3.3422 -6.3488 44 1 2.6541 0.9782 -5.5631 45 1 1.8024 2.2061 -4.5930 46 1 5.1611 -1.2806 0.0657 47 1 3.8312 -2.4634 0.1497 48 1 5.0367 -1.2910 2.6285 49 1 3.6111 -2.3560 2.5895 50 1 3.5272 -0.7861 3.4247 51 1 1.6820 -1.6437 1.2298 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601581552.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:00:57 Heat of formation + Delta-G solvation = -48.127456 kcal Electronic energy + Delta-G solvation = -31403.664716 eV Core-core repulsion = 27338.219724 eV Total energy + Delta-G solvation = -4065.444992 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.20607 -39.60213 -38.26533 -37.51202 -34.63403 -34.44173 -34.03037 -32.38514 -30.90243 -28.70728 -28.59881 -27.52089 -26.71919 -25.49049 -23.86467 -23.17106 -22.03970 -21.67003 -21.25801 -20.15345 -18.80195 -17.94009 -17.06845 -16.68373 -16.34980 -16.04133 -15.67189 -15.26752 -14.93063 -14.92712 -14.77843 -14.49545 -14.40989 -14.04819 -13.83884 -13.65438 -13.44401 -13.29779 -12.84581 -12.81181 -12.49728 -12.32186 -12.31059 -12.13108 -11.90249 -11.57192 -11.52393 -11.47137 -11.32651 -11.25963 -11.10822 -11.06199 -10.73011 -10.68899 -10.35041 -9.91873 -9.72271 -9.68822 -9.56285 -8.69793 -8.57696 -8.49001 -7.34609 -6.09503 -4.18797 1.95266 2.03661 2.46805 3.13937 3.25422 3.32454 3.37032 3.62374 4.00822 4.25838 4.37107 4.47485 4.52372 4.67540 4.68492 4.79222 4.90303 5.04275 5.12466 5.16420 5.20389 5.21038 5.28802 5.34958 5.35816 5.43510 5.44148 5.58481 5.62966 5.68082 5.69865 5.74187 5.80679 5.83923 5.92737 5.95121 6.32681 6.49162 6.52897 6.54294 6.64122 6.75589 6.91685 7.11474 7.20047 7.44329 7.58615 7.79999 7.81821 7.88098 8.10661 8.20255 8.90692 9.49156 10.95841 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.015725 B = 0.002982 C = 0.002862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1780.233156 B = 9388.866020 C = 9780.476544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.073 3.927 3 H 0.091 0.909 4 C 0.073 3.927 5 N -0.601 5.601 6 C 0.521 3.479 7 O -0.508 6.508 8 C 0.515 3.485 9 O -0.522 6.522 10 N -0.587 5.587 11 C 0.107 3.893 12 C 0.053 3.947 13 N -0.540 5.540 14 C 0.189 3.811 15 C -0.554 4.554 16 H 0.057 0.943 17 C 0.067 3.933 18 N -0.889 5.889 19 Si 0.888 3.112 20 H -0.280 1.280 21 H -0.285 1.285 22 H -0.274 1.274 23 C 0.046 3.954 24 C 0.114 3.886 25 C 0.076 3.924 26 C 0.072 3.928 27 H 0.090 0.910 28 C -0.142 4.142 29 N -0.673 5.673 30 H 0.056 0.944 31 H 0.071 0.929 32 H 0.066 0.934 33 H 0.089 0.911 34 H 0.075 0.925 35 H 0.078 0.922 36 H 0.075 0.925 37 H 0.050 0.950 38 H 0.083 0.917 39 H 0.029 0.971 40 H 0.038 0.962 41 H 0.263 0.737 42 H 0.042 0.958 43 H 0.082 0.918 44 H 0.090 0.910 45 H 0.077 0.923 46 H 0.101 0.899 47 H 0.071 0.929 48 H 0.065 0.935 49 H 0.056 0.944 50 H 0.069 0.931 51 H 0.341 0.659 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.619 -15.261 16.139 25.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.038 4.038 3 H 0.109 0.891 4 C -0.052 4.052 5 N -0.337 5.337 6 C 0.304 3.696 7 O -0.381 6.381 8 C 0.297 3.703 9 O -0.398 6.398 10 N -0.321 5.321 11 C -0.016 4.016 12 C -0.076 4.076 13 N -0.264 5.264 14 C 0.063 3.937 15 C -0.593 4.593 16 H 0.075 0.925 17 C -0.136 4.136 18 N -0.528 5.528 19 Si 0.716 3.284 20 H -0.206 1.206 21 H -0.210 1.210 22 H -0.199 1.199 23 C -0.083 4.083 24 C -0.007 4.007 25 C -0.048 4.048 26 C -0.039 4.039 27 H 0.108 0.892 28 C -0.200 4.200 29 N -0.303 5.303 30 H 0.075 0.925 31 H 0.090 0.910 32 H 0.085 0.915 33 H 0.107 0.893 34 H 0.093 0.907 35 H 0.096 0.904 36 H 0.093 0.907 37 H 0.068 0.932 38 H 0.102 0.898 39 H 0.047 0.953 40 H 0.056 0.944 41 H 0.073 0.927 42 H 0.060 0.940 43 H 0.100 0.900 44 H 0.108 0.892 45 H 0.095 0.905 46 H 0.119 0.881 47 H 0.089 0.911 48 H 0.084 0.916 49 H 0.075 0.925 50 H 0.088 0.912 51 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -12.579 -14.787 16.271 25.330 hybrid contribution 2.201 -1.067 -1.488 2.863 sum -10.378 -15.854 14.783 24.033 Atomic orbital electron populations 1.21745 0.92881 1.02423 1.03005 1.21947 0.96162 0.98873 0.86823 0.89115 1.22660 0.79297 1.02065 1.01140 1.48097 1.07088 1.62718 1.15762 1.20416 0.87285 0.77998 0.83892 1.90824 1.13495 1.53531 1.80283 1.20059 0.78949 0.83404 0.87888 1.90781 1.51185 1.53686 1.44169 1.48280 1.56005 1.04732 1.23094 1.22216 0.99257 0.89565 0.90559 1.22281 0.94839 0.95962 0.94556 1.62524 1.45968 1.08049 1.09867 1.19769 0.91748 0.87568 0.94575 1.21738 0.97718 0.96039 1.43810 0.92505 1.24939 0.98567 0.94854 0.95212 1.69937 1.36096 1.01923 1.44821 0.86653 0.84709 0.78109 0.78959 1.20578 1.21030 1.19870 1.22288 0.98779 0.92193 0.95039 1.21980 0.95442 0.97540 0.85773 1.22537 1.01358 0.97426 0.83481 1.21954 0.87450 1.00825 0.93680 0.89224 1.21736 1.01388 1.00521 0.96328 1.60754 1.08766 1.21770 1.39033 0.92461 0.91041 0.91524 0.89290 0.90679 0.90361 0.90680 0.93206 0.89847 0.95317 0.94390 0.92721 0.93951 0.89982 0.89195 0.90454 0.88097 0.91052 0.91616 0.92495 0.91151 0.84096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.79 9.48 37.15 0.35 -0.43 16 2 C 0.07 0.51 3.17 -67.59 -0.21 0.30 16 3 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 4 C 0.07 0.63 5.74 -3.60 -0.02 0.61 16 5 N -0.60 -6.67 3.01 -172.96 -0.52 -7.19 16 6 C 0.52 7.95 5.65 -11.59 -0.07 7.89 16 7 O -0.51 -9.30 16.37 5.49 0.09 -9.21 16 8 C 0.51 8.45 5.54 -11.58 -0.06 8.39 16 9 O -0.52 -9.80 16.55 5.51 0.09 -9.71 16 10 N -0.59 -9.04 3.00 -172.70 -0.52 -9.56 16 11 C 0.11 1.57 6.51 -3.37 -0.02 1.55 16 12 C 0.05 0.99 5.02 -3.47 -0.02 0.97 16 13 N -0.54 -10.80 4.83 -235.46 -1.14 -11.94 16 14 C 0.19 4.64 5.19 -4.98 -0.03 4.61 16 15 C -0.55 -14.98 7.81 -34.44 -0.27 -15.25 16 16 H 0.06 1.56 5.90 -52.49 -0.31 1.25 16 17 C 0.07 1.87 5.46 -17.82 -0.10 1.78 16 18 N -0.89 -25.73 13.29 55.43 0.74 -24.99 16 19 Si 0.89 21.58 29.54 -169.99 -5.02 16.56 16 20 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 21 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 22 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 23 C 0.05 0.85 5.35 -3.70 -0.02 0.83 16 24 C 0.11 1.72 6.61 -3.60 -0.02 1.70 16 25 C 0.08 0.68 5.87 -3.60 -0.02 0.65 16 26 C 0.07 0.51 3.17 -67.59 -0.21 0.30 16 27 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 28 C -0.14 -0.78 9.48 37.16 0.35 -0.43 16 29 N -0.67 -4.42 6.12 -99.48 -0.61 -5.03 16 30 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.09 0.87 6.44 -51.93 -0.33 0.53 16 34 H 0.07 0.58 8.14 -51.92 -0.42 0.16 16 35 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 36 H 0.07 1.08 6.31 -51.92 -0.33 0.75 16 37 H 0.05 1.08 6.42 -51.93 -0.33 0.75 16 38 H 0.08 1.54 8.11 -51.93 -0.42 1.12 16 39 H 0.03 0.75 7.92 -51.93 -0.41 0.34 16 40 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16 41 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 42 H 0.04 0.89 7.41 -51.93 -0.38 0.51 16 43 H 0.08 1.44 7.96 -51.93 -0.41 1.03 16 44 H 0.09 1.35 7.04 -51.93 -0.37 0.99 16 45 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 46 H 0.10 1.06 7.04 -51.93 -0.37 0.69 16 47 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 48 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 49 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 50 H 0.07 0.40 8.14 -51.92 -0.42 -0.02 16 51 H 0.34 1.87 8.73 -39.29 -0.34 1.53 16 LS Contribution 397.52 15.07 5.99 5.99 Total: -1.00 -32.19 397.52 -9.91 -42.10 By element: Atomic # 1 Polarization: 8.16 SS G_CDS: -8.64 Total: -0.48 kcal Atomic # 6 Polarization: 13.83 SS G_CDS: -0.37 Total: 13.46 kcal Atomic # 7 Polarization: -56.66 SS G_CDS: -2.05 Total: -58.71 kcal Atomic # 8 Polarization: -19.10 SS G_CDS: 0.18 Total: -18.92 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -32.19 -9.91 -42.10 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601581552.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.025 kcal (2) G-P(sol) polarization free energy of solvation -32.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.103 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds