Wall clock time and date at job start Tue Mar 31 2020 22:00:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09000 * 109.49337 * 2 1 4 4 C 1.53246 * 109.49481 * 239.95153 * 2 1 3 5 5 N 1.47071 * 108.52412 * 186.21155 * 4 2 1 6 6 C 1.34774 * 120.88081 * 231.16037 * 5 4 2 7 7 O 1.21359 * 120.00139 * 175.24309 * 6 5 4 8 8 C 1.49448 * 120.00081 * 355.24780 * 6 5 4 9 9 O 1.21340 * 120.00318 * 274.04893 * 8 6 5 10 10 N 1.34782 * 119.99801 * 94.04963 * 8 6 5 11 11 C 1.47075 * 120.88381 * 4.72914 * 10 8 6 12 12 C 1.53688 * 108.27680 * 128.75621 * 11 10 8 13 13 N 1.46897 * 109.25997 * 54.08619 * 12 11 10 14 14 C 1.46900 * 111.00626 * 172.60926 * 13 12 11 15 15 C 1.50697 * 109.47132 * 51.77248 * 14 13 12 16 16 H 1.07997 * 119.99986 * 5.01083 * 15 14 13 17 17 C 1.37875 * 120.00214 * 185.01910 * 15 14 13 18 18 N 1.31517 * 119.99742 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 120.00267 * 180.02562 * 17 15 14 20 20 H 1.48504 * 109.47476 * 89.99600 * 19 17 15 21 21 H 1.48507 * 109.47300 * 209.99474 * 19 17 15 22 22 H 1.48503 * 109.47046 * 329.99512 * 19 17 15 23 23 C 1.46905 * 111.26348 * 296.75707 * 13 12 11 24 24 C 1.47079 * 120.87714 * 185.01200 * 10 8 6 25 25 C 1.47086 * 118.23925 * 51.18097 * 5 4 2 26 26 C 1.53237 * 108.51980 * 308.81744 * 25 5 4 27 27 H 1.08997 * 109.49298 * 293.83865 * 26 25 5 28 28 C 1.52998 * 109.49070 * 173.78910 * 26 25 5 29 29 N 1.46897 * 109.36537 * 53.81694 * 26 25 5 30 30 H 1.09001 * 109.47289 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.47188 * 300.05163 * 1 2 3 32 32 H 1.08998 * 109.47480 * 60.05064 * 1 2 3 33 33 H 1.09002 * 109.62866 * 66.49637 * 4 2 1 34 34 H 1.09008 * 109.78283 * 306.01453 * 4 2 1 35 35 H 1.09003 * 109.62978 * 248.52818 * 11 10 8 36 36 H 1.09007 * 109.62944 * 9.10189 * 11 10 8 37 37 H 1.09005 * 109.65050 * 294.08004 * 12 11 10 38 38 H 1.09007 * 109.44721 * 173.96018 * 12 11 10 39 39 H 1.08998 * 109.47078 * 171.77360 * 14 13 12 40 40 H 1.09005 * 109.46818 * 291.77596 * 14 13 12 41 41 H 0.97005 * 119.99941 * 180.02562 * 18 17 15 42 42 H 1.08994 * 109.49426 * 303.13896 * 23 13 12 43 43 H 1.09006 * 109.51359 * 183.07574 * 23 13 12 44 44 H 1.08993 * 109.63277 * 350.89057 * 24 10 8 45 45 H 1.09001 * 109.63023 * 111.28248 * 24 10 8 46 46 H 1.09004 * 109.63072 * 189.10821 * 25 5 4 47 47 H 1.09001 * 109.78657 * 68.62007 * 25 5 4 48 48 H 1.09001 * 109.47214 * 60.05615 * 28 26 25 49 49 H 1.08997 * 109.47527 * 300.05130 * 28 26 25 50 50 H 1.09008 * 109.47341 * 180.02562 * 28 26 25 51 51 H 1.00897 * 110.99880 * 61.05397 * 29 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8936 1.0275 0.0000 4 6 2.0413 -0.7234 -1.2505 5 7 3.5041 -0.8429 -1.1557 6 6 4.2976 -0.4489 -2.1714 7 8 5.5042 -0.4738 -2.0436 8 6 3.6916 0.0188 -3.4549 9 8 3.3962 -0.7848 -4.3147 10 7 3.4732 1.3333 -3.6575 11 6 3.9171 2.3327 -2.6740 12 6 4.7254 3.4106 -3.4134 13 7 3.9215 3.9445 -4.5209 14 6 4.5849 5.0969 -5.1453 15 6 6.0019 4.7284 -5.5019 16 1 6.3481 3.7151 -5.3610 17 6 6.8565 5.6847 -6.0078 18 7 6.4349 6.9186 -6.1797 19 14 8.6128 5.2277 -6.4504 20 1 8.6675 4.7862 -7.8672 21 1 9.4933 6.4093 -6.2659 22 1 9.0741 4.1244 -5.5699 23 6 3.6270 2.9041 -5.5154 24 6 2.7791 1.8058 -4.8650 25 6 4.0781 -1.4042 0.0767 26 6 3.4866 -0.6540 1.2748 27 1 3.8239 0.3823 1.2577 28 6 3.9485 -1.3197 2.5726 29 7 2.0202 -0.6936 1.1986 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5147 0.8896 32 1 -0.3634 0.5130 -0.8904 33 1 1.7776 -0.1497 -2.1390 34 1 1.5959 -1.7165 -1.3103 35 1 3.0491 2.7857 -2.1949 36 1 4.5449 1.8534 -1.9227 37 1 5.6434 2.9746 -3.8076 38 1 4.9730 4.2165 -2.7224 39 1 4.0452 5.3813 -6.0486 40 1 4.5918 5.9342 -4.4474 41 1 7.0360 7.5914 -6.5359 42 1 4.5602 2.4752 -5.8802 43 1 3.0777 3.3422 -6.3488 44 1 2.6541 0.9782 -5.5631 45 1 1.8024 2.2061 -4.5930 46 1 5.1611 -1.2806 0.0657 47 1 3.8312 -2.4634 0.1497 48 1 5.0367 -1.2910 2.6285 49 1 3.6111 -2.3560 2.5895 50 1 3.5272 -0.7861 3.4247 51 1 1.6820 -1.6437 1.2298 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601581552.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:00:56 Heat of formation + Delta-G solvation = -72.883717 kcal Electronic energy + Delta-G solvation = -31404.738228 eV Core-core repulsion = 27338.219724 eV Total energy + Delta-G solvation = -4066.518504 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.33537 -40.66833 -39.40850 -38.91832 -36.23473 -35.29500 -34.64281 -34.38800 -32.30058 -30.22251 -29.18407 -28.49575 -27.66995 -27.07087 -25.14811 -24.69181 -23.53299 -22.24368 -22.10341 -21.46888 -20.04906 -19.16615 -18.46514 -18.17845 -17.82703 -16.86283 -16.61327 -16.52391 -16.23710 -16.18402 -16.04073 -15.66240 -15.62505 -15.19872 -15.17210 -15.00541 -14.50706 -14.43238 -13.91236 -13.86982 -13.61985 -13.34249 -13.22628 -13.07240 -13.01982 -12.90669 -12.76738 -12.65635 -12.57418 -12.45915 -12.28251 -12.11613 -12.09208 -12.06116 -11.86405 -11.83647 -11.66364 -10.85960 -10.65535 -10.51622 -10.04693 -9.25282 -9.14935 -8.22283 -6.40173 0.79949 0.84584 1.25187 1.30493 1.32528 1.42197 2.04507 2.31919 2.87548 3.03601 3.07760 3.20850 3.61474 3.78309 3.83513 3.88582 3.96445 3.99579 4.09055 4.13134 4.25114 4.31567 4.36281 4.47847 4.50265 4.55161 4.61538 4.62760 4.67124 4.79181 4.86796 4.96546 5.00410 5.04463 5.07115 5.09627 5.13490 5.18180 5.24669 5.30103 5.37098 5.39824 5.68901 5.77609 5.85938 5.96237 5.97578 6.15519 6.36575 6.44478 6.47867 6.52185 6.79273 7.31261 8.80486 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.015725 B = 0.002982 C = 0.002862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1780.233156 B = 9388.866020 C = 9780.476544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.080 3.920 3 H 0.080 0.920 4 C 0.069 3.931 5 N -0.588 5.588 6 C 0.518 3.482 7 O -0.550 6.550 8 C 0.515 3.485 9 O -0.549 6.549 10 N -0.586 5.586 11 C 0.122 3.878 12 C 0.054 3.946 13 N -0.528 5.528 14 C 0.202 3.798 15 C -0.561 4.561 16 H 0.046 0.954 17 C 0.020 3.980 18 N -0.919 5.919 19 Si 0.948 3.052 20 H -0.275 1.275 21 H -0.275 1.275 22 H -0.277 1.277 23 C 0.048 3.952 24 C 0.124 3.876 25 C 0.072 3.928 26 C 0.080 3.920 27 H 0.075 0.925 28 C -0.136 4.136 29 N -0.669 5.669 30 H 0.067 0.933 31 H 0.071 0.929 32 H 0.069 0.931 33 H 0.081 0.919 34 H 0.092 0.908 35 H 0.112 0.888 36 H 0.080 0.920 37 H 0.013 0.987 38 H 0.083 0.917 39 H 0.012 0.988 40 H 0.017 0.983 41 H 0.267 0.733 42 H 0.008 0.992 43 H 0.089 0.911 44 H 0.093 0.907 45 H 0.111 0.889 46 H 0.083 0.917 47 H 0.091 0.909 48 H 0.065 0.935 49 H 0.069 0.931 50 H 0.071 0.929 51 H 0.351 0.649 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.207 -16.563 17.780 28.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.031 4.031 3 H 0.098 0.902 4 C -0.055 4.055 5 N -0.321 5.321 6 C 0.301 3.699 7 O -0.427 6.427 8 C 0.298 3.702 9 O -0.427 6.427 10 N -0.320 5.320 11 C 0.000 4.000 12 C -0.075 4.075 13 N -0.252 5.252 14 C 0.075 3.925 15 C -0.600 4.600 16 H 0.064 0.936 17 C -0.180 4.180 18 N -0.558 5.558 19 Si 0.773 3.227 20 H -0.200 1.200 21 H -0.200 1.200 22 H -0.202 1.202 23 C -0.082 4.082 24 C 0.003 3.997 25 C -0.051 4.051 26 C -0.031 4.031 27 H 0.093 0.907 28 C -0.194 4.194 29 N -0.300 5.300 30 H 0.087 0.913 31 H 0.090 0.910 32 H 0.088 0.912 33 H 0.099 0.901 34 H 0.110 0.890 35 H 0.130 0.870 36 H 0.098 0.902 37 H 0.031 0.969 38 H 0.101 0.899 39 H 0.030 0.970 40 H 0.035 0.965 41 H 0.076 0.924 42 H 0.026 0.974 43 H 0.108 0.892 44 H 0.111 0.889 45 H 0.129 0.871 46 H 0.102 0.898 47 H 0.109 0.891 48 H 0.084 0.916 49 H 0.088 0.912 50 H 0.090 0.910 51 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -14.219 -16.105 17.952 27.997 hybrid contribution 2.640 -0.690 -1.969 3.365 sum -11.579 -16.795 15.983 25.916 Atomic orbital electron populations 1.21704 0.91327 1.03239 1.03182 1.21903 0.97195 0.98048 0.85951 0.90160 1.22923 0.77515 1.03219 1.01798 1.48218 1.08034 1.60678 1.15153 1.20253 0.86975 0.78424 0.84268 1.90806 1.15020 1.55865 1.81010 1.20312 0.78349 0.83337 0.88167 1.90759 1.52462 1.54336 1.45133 1.48347 1.55656 1.04722 1.23235 1.22122 0.99995 0.88117 0.89792 1.22275 0.94054 0.96941 0.94227 1.62471 1.44939 1.07622 1.10131 1.19442 0.90833 0.88761 0.93448 1.21951 0.99042 0.95522 1.43507 0.93584 1.25663 1.02258 0.94856 0.95263 1.70024 1.37463 1.02708 1.45620 0.85719 0.80433 0.77893 0.78629 1.20047 1.19999 1.20170 1.22332 0.97969 0.92538 0.95328 1.21949 0.95825 0.96307 0.85646 1.22770 1.00533 0.98713 0.83034 1.21870 0.87750 0.99876 0.93578 0.90690 1.21693 1.01449 1.01079 0.95160 1.60753 1.08133 1.22522 1.38574 0.91350 0.90976 0.91234 0.90071 0.89013 0.86984 0.90193 0.96892 0.89860 0.97033 0.96453 0.92419 0.97397 0.89227 0.88892 0.87110 0.89827 0.89090 0.91587 0.91210 0.90974 0.82929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.08 9.48 71.98 0.68 -0.40 16 2 C 0.08 0.91 3.17 44.99 0.14 1.05 16 3 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 4 C 0.07 1.03 5.74 86.35 0.50 1.53 16 5 N -0.59 -12.23 3.01 -819.48 -2.47 -14.70 16 6 C 0.52 15.63 5.65 87.27 0.49 16.13 16 7 O -0.55 -20.50 16.37 -3.27 -0.05 -20.55 16 8 C 0.52 16.65 5.54 87.27 0.48 17.13 16 9 O -0.55 -20.38 16.55 -3.22 -0.05 -20.44 16 10 N -0.59 -17.49 3.00 -818.65 -2.46 -19.95 16 11 C 0.12 3.45 6.51 86.50 0.56 4.01 16 12 C 0.05 2.05 5.02 86.54 0.43 2.49 16 13 N -0.53 -21.27 4.83 -898.87 -4.34 -25.61 16 14 C 0.20 10.19 5.19 85.56 0.44 10.64 16 15 C -0.56 -31.19 7.81 25.60 0.20 -30.99 16 16 H 0.05 2.63 5.90 -2.91 -0.02 2.61 16 17 C 0.02 1.12 5.46 84.65 0.46 1.59 16 18 N -0.92 -53.89 13.29 21.45 0.28 -53.61 16 19 Si 0.95 44.92 29.54 68.60 2.03 46.94 16 20 H -0.27 -12.75 7.11 99.48 0.71 -12.05 16 21 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 22 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 23 C 0.05 1.75 5.35 86.38 0.46 2.21 16 24 C 0.12 3.56 6.61 86.35 0.57 4.13 16 25 C 0.07 1.19 5.87 86.35 0.51 1.69 16 26 C 0.08 0.99 3.17 44.99 0.14 1.13 16 27 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 28 C -0.14 -1.19 9.48 71.98 0.68 -0.51 16 29 N -0.67 -6.91 6.12 -468.66 -2.87 -9.78 16 30 H 0.07 0.41 8.14 -2.39 -0.02 0.39 16 31 H 0.07 0.61 8.14 -2.38 -0.02 0.59 16 32 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 33 H 0.08 1.39 6.44 -2.39 -0.02 1.38 16 34 H 0.09 1.12 8.14 -2.38 -0.02 1.11 16 35 H 0.11 2.49 8.14 -2.39 -0.02 2.47 16 36 H 0.08 2.24 6.31 -2.38 -0.02 2.23 16 37 H 0.01 0.58 6.42 -2.38 -0.02 0.57 16 38 H 0.08 3.12 8.11 -2.38 -0.02 3.10 16 39 H 0.01 0.62 7.92 -2.39 -0.02 0.60 16 40 H 0.02 0.94 8.14 -2.38 -0.02 0.93 16 41 H 0.27 14.75 8.31 -92.70 -0.77 13.98 16 42 H 0.01 0.34 7.41 -2.39 -0.02 0.32 16 43 H 0.09 3.14 7.96 -2.38 -0.02 3.12 16 44 H 0.09 2.68 7.04 -2.39 -0.02 2.66 16 45 H 0.11 2.52 8.14 -2.39 -0.02 2.50 16 46 H 0.08 1.72 7.04 -2.39 -0.02 1.70 16 47 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 48 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 49 H 0.07 0.45 8.14 -2.39 -0.02 0.43 16 50 H 0.07 0.65 8.14 -2.38 -0.02 0.63 16 51 H 0.35 2.63 8.73 -89.70 -0.78 1.84 16 Total: -1.00 -71.51 397.52 -3.02 -74.53 By element: Atomic # 1 Polarization: 11.19 SS G_CDS: 0.14 Total: 11.34 kcal Atomic # 6 Polarization: 25.05 SS G_CDS: 6.77 Total: 31.82 kcal Atomic # 7 Polarization: -111.80 SS G_CDS: -11.85 Total: -123.64 kcal Atomic # 8 Polarization: -40.88 SS G_CDS: -0.11 Total: -40.99 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.94 kcal Total: -71.51 -3.02 -74.53 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601581552.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.648 kcal (2) G-P(sol) polarization free energy of solvation -71.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds