Wall clock time and date at job start Tue Mar 31 2020 22:47:48
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.30998 * 1
3 3 C 1.50701 * 119.99949 * 2 1
4 4 C 1.50705 * 119.99990 * 179.97438 * 2 1 3
5 5 N 1.46504 * 109.46719 * 95.00459 * 4 2 1
6 6 C 1.36734 * 127.13348 * 274.54230 * 5 4 2
7 7 C 1.50700 * 126.35307 * 359.96207 * 6 5 4
8 8 O 1.42907 * 109.46892 * 90.00217 * 7 6 5
9 9 C 1.42899 * 114.00110 * 180.02562 * 8 7 6
10 10 C 1.52999 * 109.47294 * 179.97438 * 9 8 7
11 11 O 1.42903 * 109.46705 * 64.99760 * 10 9 8
12 12 C 1.42903 * 113.99776 * 179.97438 * 11 10 9
13 13 N 1.30298 * 107.30210 * 179.84124 * 6 5 4
14 14 N 1.28533 * 110.05414 * 0.43509 * 13 6 5
15 15 C 1.31217 * 109.85284 * 359.72535 * 14 13 6
16 16 N 1.38588 * 126.46606 * 179.97438 * 15 14 13
17 17 C 1.46905 * 110.99726 * 300.37734 * 16 15 14
18 18 C 1.46901 * 110.99963 * 64.33257 * 16 15 14
19 19 H 1.08997 * 109.46999 * 55.00442 * 18 16 15
20 20 C 1.52993 * 109.47294 * 294.99836 * 18 16 15
21 21 C 1.50700 * 109.46662 * 175.00109 * 18 16 15
22 22 H 1.07998 * 120.00545 * 34.39587 * 21 18 16
23 23 C 1.37879 * 119.99520 * 214.39201 * 21 18 16
24 24 N 1.31518 * 119.99990 * 176.81633 * 23 21 18
25 25 Si 1.86791 * 120.00252 * 356.82292 * 23 21 18
26 26 H 1.48496 * 109.47751 * 84.87695 * 25 23 21
27 27 H 1.48508 * 109.47070 * 204.87654 * 25 23 21
28 28 H 1.48507 * 109.47045 * 324.87212 * 25 23 21
29 29 H 1.07998 * 119.99989 * 0.02562 * 1 2 3
30 30 H 1.08004 * 119.99945 * 179.72564 * 1 2 3
31 31 H 1.09000 * 109.46784 * 90.00016 * 3 2 1
32 32 H 1.09000 * 109.46955 * 209.99125 * 3 2 1
33 33 H 1.08996 * 109.46939 * 329.99878 * 3 2 1
34 34 H 1.08997 * 109.47091 * 215.00083 * 4 2 1
35 35 H 1.08995 * 109.47066 * 335.00777 * 4 2 1
36 36 H 1.08994 * 109.47600 * 209.99999 * 7 6 5
37 37 H 1.09003 * 109.46938 * 330.00664 * 7 6 5
38 38 H 1.09003 * 109.46636 * 300.00286 * 9 8 7
39 39 H 1.09001 * 109.47091 * 59.99571 * 9 8 7
40 40 H 1.08994 * 109.47027 * 185.00177 * 10 9 8
41 41 H 1.09000 * 109.46739 * 305.00089 * 10 9 8
42 42 H 1.08998 * 109.47246 * 300.00749 * 12 11 10
43 43 H 1.09003 * 109.46737 * 60.00173 * 12 11 10
44 44 H 1.08996 * 109.47209 * 180.02562 * 12 11 10
45 45 H 1.09005 * 109.47099 * 55.79364 * 17 16 15
46 46 H 1.09002 * 109.46841 * 175.79023 * 17 16 15
47 47 H 1.08999 * 109.47385 * 295.78948 * 17 16 15
48 48 H 1.08998 * 109.47289 * 65.80844 * 20 18 16
49 49 H 1.09001 * 109.47705 * 185.81367 * 20 18 16
50 50 H 1.09003 * 109.47337 * 305.81058 * 20 18 16
51 51 H 0.96999 * 120.00296 * 180.02562 * 24 23 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.3100 0.0000 0.0000
3 6 2.0635 1.3051 0.0000
4 6 2.0635 -1.3051 0.0006
5 7 2.4120 -1.6683 -1.3753
6 6 1.6323 -2.3426 -2.2737
7 6 0.2371 -2.8594 -2.0345
8 8 -0.7118 -1.8537 -2.3955
9 6 -2.0733 -2.2441 -2.2054
10 6 -2.9958 -1.0965 -2.6213
11 8 -2.8619 -0.8625 -4.0246
12 6 -3.6860 0.1953 -4.5186
13 7 2.3183 -2.4530 -3.3759
14 7 3.4730 -1.9067 -3.2331
15 6 3.5840 -1.4092 -2.0239
16 7 4.6844 -0.7463 -1.5039
17 6 5.8755 -1.6059 -1.5254
18 6 4.9295 0.5112 -2.2226
19 1 4.0260 1.1206 -2.2071
20 6 5.3128 0.2041 -3.6716
21 6 6.0528 1.2611 -1.5540
22 1 6.8713 0.7191 -1.1039
23 6 6.0354 2.6393 -1.5170
24 7 6.9827 3.2919 -0.8795
25 14 4.6665 3.5795 -2.3721
26 1 3.4941 3.6798 -1.4664
27 1 5.1433 4.9429 -2.7176
28 1 4.2741 2.8633 -3.6125
29 1 -0.5400 0.9353 -0.0004
30 1 -0.5400 -0.9353 -0.0045
31 1 2.2451 1.6197 1.0277
32 1 3.0159 1.1747 -0.5137
33 1 1.4744 2.0647 -0.5138
34 1 2.9742 -1.1986 0.5900
35 1 1.4385 -2.0853 0.4351
36 1 0.0707 -3.7501 -2.6404
37 1 0.1181 -3.1096 -0.9803
38 1 -2.2878 -3.1223 -2.8146
39 1 -2.2399 -2.4813 -1.1547
40 1 -4.0286 -1.3600 -2.3937
41 1 -2.7220 -0.1941 -2.0747
42 1 -4.7331 -0.0417 -4.3304
43 1 -3.4270 1.1247 -4.0114
44 1 -3.5266 0.3096 -5.5908
45 1 6.0520 -1.9567 -2.5422
46 1 6.7399 -1.0376 -1.1819
47 1 5.7183 -2.4611 -0.8681
48 1 4.4629 -0.2458 -4.1847
49 1 5.5946 1.1280 -4.1766
50 1 6.1542 -0.4888 -3.6858
51 1 6.9704 4.2615 -0.8532
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000601873219.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:47:48
Heat of formation + Delta-G solvation = 12.325237 kcal
Electronic energy + Delta-G solvation = -31650.467499 eV
Core-core repulsion = 27587.643933 eV
Total energy + Delta-G solvation = -4062.823567 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 338.211 amu
Computer time = 1.09 seconds
Orbital eigenvalues (eV)
-44.02244 -39.50982 -39.09872 -38.20498 -37.70747 -34.81030 -34.42381 -32.61844
-31.51523 -30.55377 -28.62752 -28.10382 -27.49953 -27.22534 -27.04160 -26.61813
-23.46163 -23.21965 -22.09990 -21.19390 -19.73263 -19.09057 -18.12778 -18.01660
-17.68794 -17.38966 -17.02385 -16.67679 -16.48659 -16.14636 -16.04524 -15.61281
-15.56301 -15.31013 -15.10694 -14.90071 -14.50271 -14.20142 -13.86342 -13.73597
-13.42332 -13.32221 -13.20340 -13.09024 -12.93071 -12.86002 -12.78010 -12.62301
-12.40786 -12.37782 -12.26170 -12.09154 -11.99325 -11.81616 -11.55199 -11.12121
-10.97360 -10.80556 -10.65758 -10.58975 -10.16607 -10.07629 -9.56355 -8.32643
-6.34515 0.53808 0.97254 1.24145 1.29845 1.38536 1.62990 1.70544
2.27465 2.73020 2.87872 2.91120 3.22653 3.47792 3.58092 3.72998
3.85820 4.05276 4.14715 4.22174 4.24722 4.30456 4.34271 4.44615
4.44881 4.49458 4.50790 4.56889 4.59644 4.60916 4.62922 4.70908
4.74806 4.81111 4.84177 4.84983 4.87519 4.94397 4.99836 5.02281
5.06555 5.18120 5.33224 5.49901 5.56342 5.66251 5.84112 5.97432
6.11920 6.15828 6.30976 6.58684 6.70106 7.28887 7.70558 8.82285
Molecular weight = 338.21amu
Principal moments of inertia in cm(-1)
A = 0.011998 B = 0.003919 C = 0.003561
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2333.199830 B = 7143.170612 C = 7860.285780
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.129 4.129
2 C -0.169 4.169
3 C -0.127 4.127
4 C 0.144 3.856
5 N -0.449 5.449
6 C 0.177 3.823
7 C 0.160 3.840
8 O -0.396 6.396
9 C 0.058 3.942
10 C 0.056 3.944
11 O -0.418 6.418
12 C 0.027 3.973
13 N -0.313 5.313
14 N -0.344 5.344
15 C 0.356 3.644
16 N -0.459 5.459
17 C 0.045 3.955
18 C 0.206 3.794
19 H 0.027 0.973
20 C -0.168 4.168
21 C -0.496 4.496
22 H 0.062 0.938
23 C 0.039 3.961
24 N -0.931 5.931
25 Si 0.910 3.090
26 H -0.259 1.259
27 H -0.283 1.283
28 H -0.268 1.268
29 H 0.105 0.895
30 H 0.125 0.875
31 H 0.077 0.923
32 H 0.046 0.954
33 H 0.050 0.950
34 H 0.102 0.898
35 H 0.136 0.864
36 H 0.096 0.904
37 H 0.107 0.893
38 H 0.065 0.935
39 H 0.104 0.896
40 H 0.093 0.907
41 H 0.054 0.946
42 H 0.061 0.939
43 H 0.040 0.960
44 H 0.084 0.916
45 H 0.033 0.967
46 H 0.082 0.918
47 H 0.074 0.926
48 H 0.045 0.955
49 H 0.039 0.961
50 H 0.055 0.945
51 H 0.268 0.732
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -24.116 -11.726 4.434 27.179
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.167 4.167
2 C -0.170 4.170
3 C -0.184 4.184
4 C 0.024 3.976
5 N -0.141 5.141
6 C -0.091 4.091
7 C 0.081 3.919
8 O -0.315 6.315
9 C -0.017 4.017
10 C -0.021 4.021
11 O -0.338 6.338
12 C -0.069 4.069
13 N -0.155 5.155
14 N -0.188 5.188
15 C -0.001 4.001
16 N -0.184 5.184
17 C -0.102 4.102
18 C 0.100 3.900
19 H 0.045 0.955
20 C -0.228 4.228
21 C -0.534 4.534
22 H 0.080 0.920
23 C -0.161 4.161
24 N -0.571 5.571
25 Si 0.736 3.264
26 H -0.184 1.184
27 H -0.208 1.208
28 H -0.192 1.192
29 H 0.123 0.877
30 H 0.143 0.857
31 H 0.095 0.905
32 H 0.065 0.935
33 H 0.069 0.931
34 H 0.121 0.879
35 H 0.154 0.846
36 H 0.114 0.886
37 H 0.124 0.876
38 H 0.084 0.916
39 H 0.122 0.878
40 H 0.111 0.889
41 H 0.072 0.928
42 H 0.079 0.921
43 H 0.059 0.941
44 H 0.102 0.898
45 H 0.052 0.948
46 H 0.100 0.900
47 H 0.093 0.907
48 H 0.064 0.936
49 H 0.058 0.942
50 H 0.074 0.926
51 H 0.077 0.923
Dipole moment (debyes) X Y Z Total
from point charges -23.633 -11.723 3.419 26.602
hybrid contribution -0.170 1.361 0.056 1.372
sum -23.803 -10.362 3.474 26.192
Atomic orbital electron populations
1.23940 0.93926 1.03394 0.95397 1.21690 0.96118 0.94418 1.04796
1.20919 0.99998 0.95050 1.02420 1.21110 1.02429 0.96051 0.78039
1.46598 1.11859 1.41248 1.14412 1.24917 0.97332 1.00134 0.86729
1.20620 0.78485 0.90390 1.02379 1.88072 1.15791 1.39700 1.87938
1.22838 0.79716 0.97210 1.01982 1.22796 0.99214 0.98416 0.81629
1.87950 1.66455 1.55040 1.24316 1.22851 0.94499 0.89316 1.00217
1.73872 1.00554 1.19671 1.21451 1.74643 1.13250 1.15700 1.15249
1.22869 0.89623 0.99385 0.88200 1.59323 1.01651 1.04635 1.52828
1.22313 0.91516 0.95868 1.00478 1.19463 0.95436 0.85592 0.89535
0.95498 1.22583 1.00953 1.00271 0.98979 1.20960 1.05706 0.91066
1.35703 0.92012 1.25417 0.97361 0.98272 0.95042 1.69962 1.35343
1.08508 1.43274 0.86340 0.81229 0.78482 0.80396 1.18395 1.20844
1.19238 0.87693 0.85701 0.90463 0.93469 0.93114 0.87921 0.84603
0.88563 0.87576 0.91646 0.87843 0.88878 0.92759 0.92056 0.94126
0.89755 0.94800 0.89989 0.90718 0.93640 0.94160 0.92579 0.92268
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -2.47 13.46 67.78 0.91 -1.56 16
2 C -0.17 -4.34 5.64 -16.48 -0.09 -4.43 16
3 C -0.13 -4.18 10.03 71.24 0.71 -3.47 16
4 C 0.14 3.52 6.13 85.63 0.53 4.04 16
5 N -0.45 -14.48 2.79 -518.91 -1.45 -15.93 16
6 C 0.18 5.54 7.70 137.64 1.06 6.60 16
7 C 0.16 3.11 6.31 71.24 0.45 3.56 16
8 O -0.40 -8.65 9.29 -144.33 -1.34 -9.99 16
9 C 0.06 0.74 6.32 71.98 0.45 1.20 16
10 C 0.06 0.79 6.32 71.98 0.45 1.25 16
11 O -0.42 -9.20 10.67 -144.33 -1.54 -10.74 16
12 C 0.03 0.43 11.01 113.37 1.25 1.68 16
13 N -0.31 -12.52 12.18 -49.54 -0.60 -13.13 16
14 N -0.34 -15.02 9.68 -58.01 -0.56 -15.58 16
15 C 0.36 14.36 6.28 260.11 1.63 15.99 16
16 N -0.46 -19.51 4.69 -711.00 -3.33 -22.84 16
17 C 0.05 1.76 8.72 127.69 1.11 2.88 16
18 C 0.21 10.02 1.43 44.17 0.06 10.08 16
19 H 0.03 1.39 4.30 -2.39 -0.01 1.38 16
20 C -0.17 -8.06 8.17 71.98 0.59 -7.47 16
21 C -0.50 -27.16 8.64 25.60 0.22 -26.94 16
22 H 0.06 3.62 6.25 -2.91 -0.02 3.60 16
23 C 0.04 2.19 5.47 84.65 0.46 2.65 16
24 N -0.93 -55.79 13.96 21.45 0.30 -55.50 16
25 Si 0.91 44.58 26.39 68.60 1.81 46.39 16
26 H -0.26 -12.05 7.11 99.48 0.71 -11.34 16
27 H -0.28 -13.56 7.11 99.48 0.71 -12.85 16
28 H -0.27 -13.18 6.52 99.48 0.65 -12.53 16
29 H 0.10 1.93 8.04 -2.91 -0.02 1.91 16
30 H 0.12 1.65 7.43 -2.91 -0.02 1.63 16
31 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16
32 H 0.05 1.94 6.11 -2.39 -0.01 1.92 16
33 H 0.05 1.66 8.06 -2.39 -0.02 1.64 16
34 H 0.10 2.72 8.12 -2.39 -0.02 2.70 16
35 H 0.14 1.99 7.24 -2.39 -0.02 1.97 16
36 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16
37 H 0.11 1.13 7.37 -2.39 -0.02 1.12 16
38 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16
39 H 0.10 0.51 8.14 -2.39 -0.02 0.49 16
40 H 0.09 0.73 8.14 -2.39 -0.02 0.72 16
41 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16
42 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16
43 H 0.04 0.62 8.14 -2.39 -0.02 0.60 16
44 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16
45 H 0.03 1.34 6.48 -2.38 -0.02 1.32 16
46 H 0.08 3.39 5.94 -2.39 -0.01 3.37 16
47 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16
48 H 0.04 2.19 6.07 -2.39 -0.01 2.18 16
49 H 0.04 1.95 7.27 -2.39 -0.02 1.93 16
50 H 0.06 2.57 6.27 -2.39 -0.01 2.55 16
51 H 0.27 15.14 8.31 -92.71 -0.77 14.37 16
Total: -1.00 -76.72 406.65 3.95 -72.77
By element:
Atomic # 1 Polarization: 17.63 SS G_CDS: 0.86 Total: 18.49 kcal
Atomic # 6 Polarization: -3.75 SS G_CDS: 9.81 Total: 6.05 kcal
Atomic # 7 Polarization: -117.33 SS G_CDS: -5.65 Total: -122.97 kcal
Atomic # 8 Polarization: -17.85 SS G_CDS: -2.88 Total: -20.73 kcal
Atomic # 14 Polarization: 44.58 SS G_CDS: 1.81 Total: 46.39 kcal
Total: -76.72 3.95 -72.77 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000601873219.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 85.095 kcal
(2) G-P(sol) polarization free energy of solvation -76.721 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.374 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.951 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.770 kcal
(6) G-S(sol) free energy of system = (1) + (5) 12.325 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.09 seconds