Wall clock time and date at job start Tue Mar 31 2020 22:46:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42900 * 113.99970 * 2 1 4 4 C 1.53003 * 109.46715 * 180.02562 * 3 2 1 5 5 O 1.42900 * 109.47283 * 64.99987 * 4 3 2 6 6 C 1.42901 * 113.99968 * 179.97438 * 5 4 3 7 7 C 1.50696 * 109.46948 * 180.02562 * 6 5 4 8 8 N 1.30304 * 126.34358 * 269.68915 * 7 6 5 9 9 N 1.28530 * 110.05127 * 179.82651 * 8 7 6 10 10 C 1.31215 * 109.85997 * 0.44511 * 9 8 7 11 11 N 1.38580 * 126.46952 * 179.73282 * 10 9 8 12 12 C 1.46900 * 111.00106 * 57.08342 * 11 10 9 13 13 C 1.46900 * 111.00417 * 293.12538 * 11 10 9 14 14 H 1.09005 * 109.47244 * 310.00785 * 13 11 10 15 15 C 1.53004 * 109.46725 * 70.00107 * 13 11 10 16 16 C 1.50695 * 109.47468 * 190.00208 * 13 11 10 17 17 H 1.07999 * 119.99779 * 0.02562 * 16 13 11 18 18 C 1.37883 * 119.99816 * 180.02562 * 16 13 11 19 19 N 1.31514 * 120.00210 * 359.97438 * 18 16 13 20 20 Si 1.86800 * 119.99661 * 180.02562 * 18 16 13 21 21 H 1.48501 * 109.47447 * 59.99554 * 20 18 16 22 22 H 1.48494 * 109.46782 * 180.02562 * 20 18 16 23 23 H 1.48504 * 109.47229 * 299.99761 * 20 18 16 24 24 N 1.36446 * 107.05624 * 359.73673 * 10 9 8 25 25 C 1.46501 * 127.13869 * 180.02562 * 24 10 9 26 26 C 1.52997 * 109.47086 * 267.47021 * 25 24 10 27 27 C 1.52996 * 117.50214 * 243.62126 * 26 25 24 28 28 C 1.52999 * 60.00178 * 252.51218 * 27 26 25 29 29 H 1.09005 * 109.46940 * 299.99707 * 1 2 3 30 30 H 1.08994 * 109.47479 * 59.99450 * 1 2 3 31 31 H 1.09005 * 109.47633 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.46998 * 60.00320 * 3 2 1 33 33 H 1.08997 * 109.47208 * 300.00288 * 3 2 1 34 34 H 1.09000 * 109.46702 * 185.00161 * 4 3 2 35 35 H 1.08999 * 109.47223 * 305.00042 * 4 3 2 36 36 H 1.09002 * 109.46989 * 300.00142 * 6 5 4 37 37 H 1.08999 * 109.47356 * 60.00139 * 6 5 4 38 38 H 1.09000 * 109.46983 * 67.73687 * 12 11 10 39 39 H 1.09005 * 109.47188 * 187.73756 * 12 11 10 40 40 H 1.08997 * 109.47015 * 307.73771 * 12 11 10 41 41 H 1.08998 * 109.47313 * 60.00577 * 15 13 11 42 42 H 1.09001 * 109.46637 * 180.02562 * 15 13 11 43 43 H 1.09002 * 109.47085 * 299.99844 * 15 13 11 44 44 H 0.96991 * 120.00159 * 180.02562 * 19 18 16 45 45 H 1.08996 * 109.47356 * 27.47216 * 25 24 10 46 46 H 1.09008 * 109.47394 * 147.47276 * 25 24 10 47 47 H 1.09005 * 115.55019 * 29.33122 * 26 25 24 48 48 H 1.08999 * 117.49939 * 359.97438 * 27 26 25 49 49 H 1.09003 * 117.49946 * 145.02036 * 27 26 25 50 50 H 1.09003 * 117.49728 * 252.50879 * 28 27 26 51 51 H 1.08996 * 117.50320 * 107.48616 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 -0.0006 5 8 3.9648 0.5795 -1.2220 6 6 5.3812 0.4200 -1.3250 7 6 5.7194 -0.2234 -2.6451 8 7 5.8237 -1.5013 -2.8771 9 7 6.1207 -1.7024 -4.1113 10 6 6.2321 -0.5538 -4.7358 11 7 6.5467 -0.3702 -6.0729 12 6 5.5938 -1.0763 -6.9397 13 6 7.9256 -0.7930 -6.3522 14 1 8.5994 -0.3371 -5.6267 15 6 8.0222 -2.3166 -6.2506 16 6 8.3133 -0.3566 -7.7415 17 1 7.6062 0.1815 -8.3554 18 6 9.5706 -0.6442 -8.2287 19 7 10.4318 -1.2989 -7.4808 20 14 10.0514 -0.1025 -9.9506 21 1 9.9583 1.3763 -10.0485 22 1 11.4448 -0.5311 -10.2333 23 1 9.1331 -0.7228 -10.9392 24 7 5.9796 0.4258 -3.8201 25 6 5.9854 1.8729 -4.0485 26 6 7.3732 2.4336 -3.7314 27 6 7.4855 3.4296 -2.5754 28 6 7.6189 3.9160 -4.0199 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 1.6886 1.8463 0.8900 33 1 1.6886 1.8464 -0.8899 34 1 3.9785 2.1764 0.0890 35 1 3.8514 0.5681 0.8409 36 1 5.8622 1.3962 -1.2631 37 1 5.7358 -0.2121 -0.5109 38 1 4.6144 -0.6039 -6.8636 39 1 5.9397 -1.0312 -7.9725 40 1 5.5202 -2.1177 -6.6263 41 1 7.3485 -2.7726 -6.9760 42 1 9.0455 -2.6303 -6.4574 43 1 7.7419 -2.6323 -5.2457 44 1 11.3164 -1.5009 -7.8235 45 1 5.7404 2.0772 -5.0907 46 1 5.2461 2.3458 -3.4020 47 1 8.2047 1.7461 -3.8864 48 1 6.5706 3.6856 -2.0410 49 1 8.3910 3.3973 -1.9695 50 1 8.6123 4.2038 -4.3643 51 1 6.7920 4.4916 -4.4356 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601906502.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:46:47 Heat of formation + Delta-G solvation = 36.772105 kcal Electronic energy + Delta-G solvation = -30725.881655 eV Core-core repulsion = 26664.118184 eV Total energy + Delta-G solvation = -4061.763471 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.49513 -38.69192 -37.72570 -37.45452 -37.06206 -33.99342 -32.86904 -31.38675 -29.76768 -28.64914 -27.46849 -26.64512 -26.10757 -25.29311 -24.96980 -22.84360 -22.49134 -21.61390 -21.17576 -20.39917 -19.31884 -17.36072 -17.03070 -16.97159 -16.34325 -15.94707 -15.81730 -15.59153 -15.36246 -15.25319 -14.73088 -14.62864 -14.44490 -14.14114 -13.53727 -13.28803 -12.91129 -12.83862 -12.54516 -12.36539 -12.19372 -11.89556 -11.65025 -11.61512 -11.49692 -11.35788 -11.25987 -11.18974 -10.90775 -10.75946 -10.57248 -10.50775 -10.26794 -10.12233 -10.04831 -9.99247 -9.93661 -9.78790 -9.62854 -8.89956 -8.50645 -8.42522 -7.69878 -6.05549 -4.11610 2.04232 2.63491 3.19742 3.29451 3.34461 3.36413 3.48324 3.68516 3.76628 4.33209 4.48991 4.57475 4.67212 4.69767 4.73889 4.85886 4.91178 4.94856 5.02005 5.04611 5.06363 5.13273 5.18671 5.20771 5.26153 5.42192 5.43115 5.45495 5.51460 5.52203 5.81057 5.81854 5.98802 6.02531 6.18651 6.23642 6.39038 6.49878 6.63954 6.81314 6.85250 6.94440 7.06205 7.09397 7.21329 7.53589 7.67076 7.77741 7.96662 8.27908 8.48685 8.91511 9.26469 9.52835 11.01087 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.015229 B = 0.002939 C = 0.002670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1838.188388 B = 9523.943033 C =10484.089354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.381 6.381 3 C 0.063 3.937 4 C 0.063 3.937 5 O -0.374 6.374 6 C 0.160 3.840 7 C 0.156 3.844 8 N -0.271 5.271 9 N -0.313 5.313 10 C 0.385 3.615 11 N -0.470 5.470 12 C 0.045 3.955 13 C 0.228 3.772 14 H 0.034 0.966 15 C -0.175 4.175 16 C -0.505 4.505 17 H 0.065 0.935 18 C 0.062 3.938 19 N -0.889 5.889 20 Si 0.900 3.100 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.276 1.276 24 N -0.458 5.458 25 C 0.148 3.852 26 C -0.167 4.167 27 C -0.183 4.183 28 C -0.162 4.162 29 H 0.039 0.961 30 H 0.041 0.959 31 H 0.086 0.914 32 H 0.064 0.936 33 H 0.057 0.943 34 H 0.066 0.934 35 H 0.062 0.938 36 H 0.067 0.933 37 H 0.084 0.916 38 H 0.044 0.956 39 H 0.090 0.910 40 H 0.040 0.960 41 H 0.031 0.969 42 H 0.086 0.914 43 H 0.036 0.964 44 H 0.262 0.738 45 H 0.108 0.892 46 H 0.087 0.913 47 H 0.115 0.885 48 H 0.092 0.908 49 H 0.095 0.905 50 H 0.100 0.900 51 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.608 11.517 14.710 23.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.299 6.299 3 C -0.013 4.013 4 C -0.013 4.013 5 O -0.292 6.292 6 C 0.082 3.918 7 C -0.111 4.111 8 N -0.114 5.114 9 N -0.157 5.157 10 C 0.029 3.971 11 N -0.196 5.196 12 C -0.103 4.103 13 C 0.124 3.876 14 H 0.052 0.948 15 C -0.235 4.235 16 C -0.544 4.544 17 H 0.083 0.917 18 C -0.140 4.140 19 N -0.527 5.527 20 Si 0.728 3.272 21 H -0.202 1.202 22 H -0.214 1.214 23 H -0.202 1.202 24 N -0.152 5.152 25 C 0.025 3.975 26 C -0.186 4.186 27 C -0.220 4.220 28 C -0.199 4.199 29 H 0.057 0.943 30 H 0.060 0.940 31 H 0.105 0.895 32 H 0.082 0.918 33 H 0.075 0.925 34 H 0.084 0.916 35 H 0.080 0.920 36 H 0.085 0.915 37 H 0.102 0.898 38 H 0.063 0.937 39 H 0.109 0.891 40 H 0.059 0.941 41 H 0.050 0.950 42 H 0.105 0.895 43 H 0.055 0.945 44 H 0.072 0.928 45 H 0.126 0.874 46 H 0.106 0.894 47 H 0.133 0.867 48 H 0.111 0.889 49 H 0.113 0.887 50 H 0.118 0.882 51 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -13.479 10.260 14.690 22.423 hybrid contribution 0.470 1.250 -0.863 1.590 sum -13.010 11.510 13.827 22.202 Atomic orbital electron populations 1.22747 0.81109 1.02964 0.99712 1.88008 1.19542 1.27061 1.95323 1.22547 0.92324 0.85695 1.00776 1.22534 0.93479 0.97510 0.87815 1.88048 1.21020 1.82171 1.37929 1.20348 0.82311 0.98756 0.90418 1.23867 1.08000 0.90265 0.88979 1.73952 1.15415 1.12316 1.09676 1.74782 1.20183 1.21267 0.99515 1.22946 0.99048 0.83320 0.91784 1.59417 1.07539 1.58021 0.94672 1.22255 0.93407 0.96461 0.98183 1.19364 0.79110 0.91878 0.97264 0.94786 1.22463 1.03686 0.98719 0.98587 1.20951 0.98747 1.36258 0.98461 0.91735 1.24904 0.96285 0.95054 0.97751 1.69899 1.06397 1.39792 1.36655 0.86532 0.77462 0.78971 0.84254 1.20249 1.21352 1.20194 1.46274 1.51913 1.08155 1.08843 1.21326 0.95856 0.76103 1.04245 1.22610 0.98543 0.93599 1.03836 1.23101 1.03190 1.04137 0.91598 1.22903 1.03563 0.95491 0.97982 0.94279 0.94047 0.89509 0.91779 0.92454 0.91641 0.91953 0.91498 0.89802 0.93669 0.89148 0.94138 0.94965 0.89544 0.94527 0.92769 0.87381 0.89444 0.86722 0.88920 0.88651 0.88202 0.88509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 11.01 101.05 1.11 1.36 16 2 O -0.38 -4.38 10.67 -40.08 -0.43 -4.81 16 3 C 0.06 0.54 6.32 37.16 0.23 0.78 16 4 C 0.06 0.56 6.32 37.16 0.23 0.80 16 5 O -0.37 -4.94 10.29 -40.08 -0.41 -5.35 16 6 C 0.16 2.06 6.19 36.00 0.22 2.28 16 7 C 0.16 2.77 7.70 -154.01 -1.19 1.59 16 8 N -0.27 -5.81 12.18 32.99 0.40 -5.41 16 9 N -0.31 -7.24 9.81 30.31 0.30 -6.94 16 10 C 0.38 8.25 6.26 -318.89 -2.00 6.25 16 11 N -0.47 -10.39 4.73 -176.08 -0.83 -11.22 16 12 C 0.04 0.91 8.49 60.06 0.51 1.42 16 13 C 0.23 5.80 2.28 -68.86 -0.16 5.64 16 14 H 0.03 0.97 8.05 -51.93 -0.42 0.55 16 15 C -0.18 -4.51 8.18 37.16 0.30 -4.21 16 16 C -0.51 -13.41 7.80 -34.44 -0.27 -13.68 16 17 H 0.06 1.68 7.20 -52.49 -0.38 1.30 16 18 C 0.06 1.67 5.30 -17.82 -0.09 1.58 16 19 N -0.89 -25.12 11.32 55.43 0.63 -24.49 16 20 Si 0.90 20.84 29.54 -169.99 -5.02 15.82 16 21 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 22 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 23 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 24 N -0.46 -8.20 2.81 -114.09 -0.32 -8.52 16 25 C 0.15 2.06 6.15 -4.04 -0.02 2.03 16 26 C -0.17 -2.22 6.01 -90.62 -0.54 -2.76 16 27 C -0.18 -1.80 10.18 -26.73 -0.27 -2.08 16 28 C -0.16 -1.74 10.25 -26.73 -0.27 -2.02 16 29 H 0.04 0.23 8.14 -51.93 -0.42 -0.19 16 30 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.07 0.67 7.97 -51.93 -0.41 0.26 16 37 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.09 1.85 6.62 -51.93 -0.34 1.51 16 40 H 0.04 0.85 6.67 -51.93 -0.35 0.51 16 41 H 0.03 0.79 6.59 -51.93 -0.34 0.45 16 42 H 0.09 2.42 6.07 -51.93 -0.32 2.10 16 43 H 0.04 0.94 6.01 -51.93 -0.31 0.62 16 44 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 45 H 0.11 1.57 8.14 -51.93 -0.42 1.15 16 46 H 0.09 0.98 7.73 -51.92 -0.40 0.58 16 47 H 0.11 1.94 8.14 -51.93 -0.42 1.51 16 48 H 0.09 0.74 8.03 -51.93 -0.42 0.32 16 49 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 50 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 51 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 414.35 15.07 6.24 6.24 Total: -1.00 -33.26 414.35 -10.39 -43.65 By element: Atomic # 1 Polarization: 10.79 SS G_CDS: -8.74 Total: 2.05 kcal Atomic # 6 Polarization: 1.18 SS G_CDS: -2.20 Total: -1.02 kcal Atomic # 7 Polarization: -56.76 SS G_CDS: 0.17 Total: -56.59 kcal Atomic # 8 Polarization: -9.32 SS G_CDS: -0.84 Total: -10.16 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -33.26 -10.39 -43.65 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601906502.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.423 kcal (2) G-P(sol) polarization free energy of solvation -33.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.650 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds