Wall clock time and date at job start Tue Mar 31 2020 22:46:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42900 * 113.99970 * 2 1 4 4 C 1.53003 * 109.46715 * 180.02562 * 3 2 1 5 5 O 1.42900 * 109.47283 * 64.99987 * 4 3 2 6 6 C 1.42901 * 113.99968 * 179.97438 * 5 4 3 7 7 C 1.50696 * 109.46948 * 180.02562 * 6 5 4 8 8 N 1.30304 * 126.34358 * 269.68915 * 7 6 5 9 9 N 1.28530 * 110.05127 * 179.82651 * 8 7 6 10 10 C 1.31215 * 109.85997 * 0.44511 * 9 8 7 11 11 N 1.38580 * 126.46952 * 179.73282 * 10 9 8 12 12 C 1.46900 * 111.00106 * 57.08342 * 11 10 9 13 13 C 1.46900 * 111.00417 * 293.12538 * 11 10 9 14 14 H 1.09005 * 109.47244 * 310.00785 * 13 11 10 15 15 C 1.53004 * 109.46725 * 70.00107 * 13 11 10 16 16 C 1.50695 * 109.47468 * 190.00208 * 13 11 10 17 17 H 1.07999 * 119.99779 * 0.02562 * 16 13 11 18 18 C 1.37883 * 119.99816 * 180.02562 * 16 13 11 19 19 N 1.31514 * 120.00210 * 359.97438 * 18 16 13 20 20 Si 1.86800 * 119.99661 * 180.02562 * 18 16 13 21 21 H 1.48501 * 109.47447 * 59.99554 * 20 18 16 22 22 H 1.48494 * 109.46782 * 180.02562 * 20 18 16 23 23 H 1.48504 * 109.47229 * 299.99761 * 20 18 16 24 24 N 1.36446 * 107.05624 * 359.73673 * 10 9 8 25 25 C 1.46501 * 127.13869 * 180.02562 * 24 10 9 26 26 C 1.52997 * 109.47086 * 267.47021 * 25 24 10 27 27 C 1.52996 * 117.50214 * 243.62126 * 26 25 24 28 28 C 1.52999 * 60.00178 * 252.51218 * 27 26 25 29 29 H 1.09005 * 109.46940 * 299.99707 * 1 2 3 30 30 H 1.08994 * 109.47479 * 59.99450 * 1 2 3 31 31 H 1.09005 * 109.47633 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.46998 * 60.00320 * 3 2 1 33 33 H 1.08997 * 109.47208 * 300.00288 * 3 2 1 34 34 H 1.09000 * 109.46702 * 185.00161 * 4 3 2 35 35 H 1.08999 * 109.47223 * 305.00042 * 4 3 2 36 36 H 1.09002 * 109.46989 * 300.00142 * 6 5 4 37 37 H 1.08999 * 109.47356 * 60.00139 * 6 5 4 38 38 H 1.09000 * 109.46983 * 67.73687 * 12 11 10 39 39 H 1.09005 * 109.47188 * 187.73756 * 12 11 10 40 40 H 1.08997 * 109.47015 * 307.73771 * 12 11 10 41 41 H 1.08998 * 109.47313 * 60.00577 * 15 13 11 42 42 H 1.09001 * 109.46637 * 180.02562 * 15 13 11 43 43 H 1.09002 * 109.47085 * 299.99844 * 15 13 11 44 44 H 0.96991 * 120.00159 * 180.02562 * 19 18 16 45 45 H 1.08996 * 109.47356 * 27.47216 * 25 24 10 46 46 H 1.09008 * 109.47394 * 147.47276 * 25 24 10 47 47 H 1.09005 * 115.55019 * 29.33122 * 26 25 24 48 48 H 1.08999 * 117.49939 * 359.97438 * 27 26 25 49 49 H 1.09003 * 117.49946 * 145.02036 * 27 26 25 50 50 H 1.09003 * 117.49728 * 252.50879 * 28 27 26 51 51 H 1.08996 * 117.50320 * 107.48616 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 -0.0006 5 8 3.9648 0.5795 -1.2220 6 6 5.3812 0.4200 -1.3250 7 6 5.7194 -0.2234 -2.6451 8 7 5.8237 -1.5013 -2.8771 9 7 6.1207 -1.7024 -4.1113 10 6 6.2321 -0.5538 -4.7358 11 7 6.5467 -0.3702 -6.0729 12 6 5.5938 -1.0763 -6.9397 13 6 7.9256 -0.7930 -6.3522 14 1 8.5994 -0.3371 -5.6267 15 6 8.0222 -2.3166 -6.2506 16 6 8.3133 -0.3566 -7.7415 17 1 7.6062 0.1815 -8.3554 18 6 9.5706 -0.6442 -8.2287 19 7 10.4318 -1.2989 -7.4808 20 14 10.0514 -0.1025 -9.9506 21 1 9.9583 1.3763 -10.0485 22 1 11.4448 -0.5311 -10.2333 23 1 9.1331 -0.7228 -10.9392 24 7 5.9796 0.4258 -3.8201 25 6 5.9854 1.8729 -4.0485 26 6 7.3732 2.4336 -3.7314 27 6 7.4855 3.4296 -2.5754 28 6 7.6189 3.9160 -4.0199 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 1.6886 1.8463 0.8900 33 1 1.6886 1.8464 -0.8899 34 1 3.9785 2.1764 0.0890 35 1 3.8514 0.5681 0.8409 36 1 5.8622 1.3962 -1.2631 37 1 5.7358 -0.2121 -0.5109 38 1 4.6144 -0.6039 -6.8636 39 1 5.9397 -1.0312 -7.9725 40 1 5.5202 -2.1177 -6.6263 41 1 7.3485 -2.7726 -6.9760 42 1 9.0455 -2.6303 -6.4574 43 1 7.7419 -2.6323 -5.2457 44 1 11.3164 -1.5009 -7.8235 45 1 5.7404 2.0772 -5.0907 46 1 5.2461 2.3458 -3.4020 47 1 8.2047 1.7461 -3.8864 48 1 6.5706 3.6856 -2.0410 49 1 8.3910 3.3973 -1.9695 50 1 8.6123 4.2038 -4.3643 51 1 6.7920 4.4916 -4.4356 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601906502.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:46:45 Heat of formation + Delta-G solvation = 16.785286 kcal Electronic energy + Delta-G solvation = -30726.748348 eV Core-core repulsion = 26664.118184 eV Total energy + Delta-G solvation = -4062.630164 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -44.01389 -39.51081 -38.99204 -38.69402 -38.13058 -35.34814 -34.85044 -32.49277 -31.04427 -30.37422 -28.72548 -27.67274 -27.26395 -27.06491 -26.68143 -23.50149 -23.44556 -23.15217 -22.47229 -21.74073 -20.92597 -18.55582 -18.18450 -18.09160 -17.73299 -17.46846 -16.98608 -16.69123 -16.54653 -16.17339 -16.14039 -15.85047 -15.49163 -15.41894 -15.07905 -14.73496 -14.33757 -14.15155 -13.59762 -13.42710 -13.30248 -13.11025 -13.01621 -13.01048 -12.89494 -12.69493 -12.62761 -12.43217 -12.36439 -12.32446 -12.14074 -12.06885 -11.99787 -11.64389 -11.55445 -11.04694 -10.97720 -10.89370 -10.68651 -10.60017 -10.52153 -10.10592 -9.50839 -8.13721 -6.27501 0.62106 1.25988 1.45358 1.47207 1.54900 1.69538 2.41527 2.69731 2.80889 2.91029 3.03674 3.16198 3.43703 3.63478 3.70010 3.89483 3.96173 4.08284 4.11600 4.16300 4.23733 4.29286 4.35049 4.46213 4.50590 4.52643 4.55868 4.60302 4.60378 4.64653 4.68815 4.76981 4.80502 4.83834 4.87096 4.99397 5.00184 5.02316 5.08062 5.11797 5.16291 5.25816 5.37667 5.60564 5.62769 5.81027 6.02394 6.08320 6.19753 6.30315 6.60708 6.81662 7.41321 7.70005 8.93015 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.015229 B = 0.002939 C = 0.002670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1838.188388 B = 9523.943033 C =10484.089354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.420 6.420 3 C 0.057 3.943 4 C 0.056 3.944 5 O -0.401 6.401 6 C 0.164 3.836 7 C 0.176 3.824 8 N -0.316 5.316 9 N -0.348 5.348 10 C 0.361 3.639 11 N -0.465 5.465 12 C 0.049 3.951 13 C 0.242 3.758 14 H -0.006 1.006 15 C -0.158 4.158 16 C -0.515 4.515 17 H 0.070 0.930 18 C 0.013 3.987 19 N -0.922 5.922 20 Si 0.968 3.032 21 H -0.268 1.268 22 H -0.288 1.288 23 H -0.268 1.268 24 N -0.452 5.452 25 C 0.147 3.853 26 C -0.197 4.197 27 C -0.153 4.153 28 C -0.156 4.156 29 H 0.060 0.940 30 H 0.044 0.956 31 H 0.085 0.915 32 H 0.096 0.904 33 H 0.056 0.944 34 H 0.104 0.896 35 H 0.065 0.935 36 H 0.104 0.896 37 H 0.093 0.907 38 H 0.071 0.929 39 H 0.087 0.913 40 H 0.026 0.974 41 H 0.035 0.965 42 H 0.061 0.939 43 H 0.029 0.971 44 H 0.263 0.737 45 H 0.098 0.902 46 H 0.125 0.875 47 H 0.066 0.934 48 H 0.126 0.874 49 H 0.099 0.901 50 H 0.091 0.909 51 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.133 14.729 15.711 26.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.340 6.340 3 C -0.019 4.019 4 C -0.020 4.020 5 O -0.319 6.319 6 C 0.086 3.914 7 C -0.093 4.093 8 N -0.158 5.158 9 N -0.192 5.192 10 C 0.004 3.996 11 N -0.190 5.190 12 C -0.098 4.098 13 C 0.136 3.864 14 H 0.012 0.988 15 C -0.218 4.218 16 C -0.554 4.554 17 H 0.088 0.912 18 C -0.186 4.186 19 N -0.561 5.561 20 Si 0.793 3.207 21 H -0.193 1.193 22 H -0.214 1.214 23 H -0.193 1.193 24 N -0.145 5.145 25 C 0.026 3.974 26 C -0.216 4.216 27 C -0.189 4.189 28 C -0.194 4.194 29 H 0.079 0.921 30 H 0.062 0.938 31 H 0.104 0.896 32 H 0.114 0.886 33 H 0.074 0.926 34 H 0.122 0.878 35 H 0.083 0.917 36 H 0.122 0.878 37 H 0.111 0.889 38 H 0.089 0.911 39 H 0.106 0.894 40 H 0.045 0.955 41 H 0.054 0.946 42 H 0.080 0.920 43 H 0.048 0.952 44 H 0.072 0.928 45 H 0.117 0.883 46 H 0.143 0.857 47 H 0.084 0.916 48 H 0.144 0.856 49 H 0.117 0.883 50 H 0.110 0.890 51 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -15.034 13.499 15.705 25.591 hybrid contribution 0.888 0.296 -1.031 1.393 sum -14.146 13.796 14.674 24.612 Atomic orbital electron populations 1.22876 0.79788 1.03397 1.00883 1.87953 1.21275 1.29131 1.95608 1.22784 0.92075 0.84842 1.02207 1.22887 0.93837 0.99186 0.86053 1.88001 1.20554 1.83130 1.40262 1.20553 0.83089 1.00317 0.87488 1.24885 1.04597 0.89480 0.90323 1.73855 1.17973 1.14778 1.09180 1.74621 1.21089 1.22844 1.00640 1.22880 1.00706 0.84212 0.91835 1.59309 1.06173 1.57863 0.95673 1.22255 0.94200 0.95857 0.97533 1.18985 0.80560 0.90881 0.95931 0.98841 1.22268 1.01965 0.99370 0.98155 1.21193 0.99107 1.36246 0.98809 0.91186 1.25762 0.96179 0.94935 1.01707 1.70053 1.06691 1.40820 1.38525 0.85458 0.76994 0.78904 0.79365 1.19251 1.21369 1.19268 1.46485 1.50675 1.09318 1.07993 1.21624 0.97227 0.73851 1.04731 1.22359 0.96537 0.94231 1.08503 1.23253 1.04869 0.99967 0.90840 1.23018 1.03999 0.93140 0.99219 0.92135 0.93769 0.89614 0.88641 0.92559 0.87844 0.91709 0.87822 0.88901 0.91077 0.89410 0.95488 0.94635 0.92006 0.95183 0.92838 0.88341 0.85663 0.91577 0.85572 0.88272 0.88997 0.86390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 11.01 113.37 1.25 1.63 16 2 O -0.42 -9.06 10.67 -144.34 -1.54 -10.60 16 3 C 0.06 0.81 6.32 71.98 0.45 1.26 16 4 C 0.06 0.79 6.32 71.98 0.45 1.25 16 5 O -0.40 -9.52 10.29 -144.34 -1.49 -11.00 16 6 C 0.16 3.79 6.19 71.23 0.44 4.23 16 7 C 0.18 6.17 7.70 137.64 1.06 7.23 16 8 N -0.32 -13.94 12.18 -49.54 -0.60 -14.54 16 9 N -0.35 -16.78 9.81 -58.01 -0.57 -17.35 16 10 C 0.36 16.00 6.26 260.12 1.63 17.63 16 11 N -0.46 -21.18 4.73 -711.00 -3.37 -24.55 16 12 C 0.05 2.02 8.49 127.69 1.08 3.10 16 13 C 0.24 12.89 2.28 44.17 0.10 12.99 16 14 H -0.01 -0.38 8.05 -2.38 -0.02 -0.40 16 15 C -0.16 -8.59 8.18 71.98 0.59 -8.00 16 16 C -0.52 -27.92 7.80 25.60 0.20 -27.72 16 17 H 0.07 3.65 7.20 -2.91 -0.02 3.63 16 18 C 0.01 0.72 5.30 84.66 0.45 1.17 16 19 N -0.92 -53.76 11.32 21.45 0.24 -53.52 16 20 Si 0.97 42.90 29.54 68.60 2.03 44.92 16 21 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 22 H -0.29 -12.69 7.11 99.48 0.71 -11.98 16 23 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 24 N -0.45 -16.16 2.81 -514.86 -1.45 -17.60 16 25 C 0.15 3.87 6.15 86.38 0.53 4.40 16 26 C -0.20 -5.07 6.01 -10.80 -0.06 -5.13 16 27 C -0.15 -2.46 10.18 30.59 0.31 -2.15 16 28 C -0.16 -3.01 10.25 30.59 0.31 -2.70 16 29 H 0.06 0.58 8.14 -2.38 -0.02 0.56 16 30 H 0.04 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.09 1.18 8.14 -2.38 -0.02 1.16 16 32 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 35 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 36 H 0.10 1.61 7.97 -2.39 -0.02 1.60 16 37 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 38 H 0.07 2.54 8.14 -2.39 -0.02 2.52 16 39 H 0.09 3.63 6.62 -2.38 -0.02 3.61 16 40 H 0.03 1.17 6.67 -2.39 -0.02 1.15 16 41 H 0.03 1.83 6.59 -2.39 -0.02 1.82 16 42 H 0.06 3.64 6.07 -2.39 -0.01 3.62 16 43 H 0.03 1.63 6.01 -2.39 -0.01 1.61 16 44 H 0.26 14.59 8.31 -92.71 -0.77 13.82 16 45 H 0.10 2.76 8.14 -2.39 -0.02 2.75 16 46 H 0.13 2.32 7.73 -2.38 -0.02 2.30 16 47 H 0.07 2.37 8.14 -2.38 -0.02 2.35 16 48 H 0.13 1.24 8.03 -2.39 -0.02 1.22 16 49 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 50 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 51 H 0.12 1.78 8.14 -2.39 -0.02 1.76 16 Total: -1.00 -77.37 414.35 2.97 -74.40 By element: Atomic # 1 Polarization: 19.72 SS G_CDS: 0.91 Total: 20.62 kcal Atomic # 6 Polarization: 0.41 SS G_CDS: 8.80 Total: 9.21 kcal Atomic # 7 Polarization: -121.82 SS G_CDS: -5.74 Total: -127.56 kcal Atomic # 8 Polarization: -18.57 SS G_CDS: -3.03 Total: -21.60 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 2.03 Total: 44.92 kcal Total: -77.37 2.97 -74.40 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601906502.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.188 kcal (2) G-P(sol) polarization free energy of solvation -77.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.403 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds