Wall clock time and date at job start Tue Mar 31 2020 21:51:33
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42901 * 1
3 3 C 1.42900 * 113.99538 * 2 1
4 4 C 1.53001 * 109.46980 * 179.97438 * 3 2 1
5 5 N 1.46497 * 109.47016 * 175.18469 * 4 3 2
6 6 C 1.36738 * 127.14166 * 274.79135 * 5 4 3
7 7 C 1.50690 * 126.34711 * 359.96428 * 6 5 4
8 8 H 1.08999 * 110.45728 * 1.43783 * 7 6 5
9 9 C 1.54506 * 110.51595 * 238.83484 * 7 6 5
10 10 C 1.54477 * 104.06552 * 241.35598 * 9 7 6
11 11 O 1.44428 * 104.80267 * 23.97563 * 10 9 7
12 12 C 1.44423 * 105.27242 * 319.48824 * 11 10 9
13 13 H 1.08995 * 110.37187 * 281.67996 * 12 11 10
14 14 C 1.53002 * 110.36970 * 159.34382 * 12 11 10
15 15 N 1.30302 * 107.30473 * 180.23065 * 6 5 4
16 16 N 1.28528 * 110.05458 * 359.77081 * 15 6 5
17 17 C 1.31220 * 109.86037 * 0.02562 * 16 15 6
18 18 N 1.38576 * 126.47322 * 179.97438 * 17 16 15
19 19 C 1.46907 * 110.99777 * 68.42985 * 18 17 16
20 20 C 1.46900 * 111.00277 * 304.47491 * 18 17 16
21 21 H 1.08998 * 109.46965 * 59.99912 * 20 18 17
22 22 C 1.52995 * 109.47143 * 300.00098 * 20 18 17
23 23 C 1.50700 * 109.47019 * 179.97438 * 20 18 17
24 24 H 1.07996 * 120.00168 * 359.72408 * 23 20 18
25 25 C 1.37878 * 119.99847 * 180.02562 * 23 20 18
26 26 N 1.31519 * 119.99715 * 359.97438 * 25 23 20
27 27 Si 1.86800 * 120.00155 * 180.02562 * 25 23 20
28 28 H 1.48497 * 109.47026 * 359.97438 * 27 25 23
29 29 H 1.48500 * 109.47339 * 120.00116 * 27 25 23
30 30 H 1.48506 * 109.46876 * 239.99900 * 27 25 23
31 31 H 1.09008 * 109.46750 * 180.02562 * 1 2 3
32 32 H 1.09000 * 109.47435 * 299.99802 * 1 2 3
33 33 H 1.08998 * 109.47136 * 60.00727 * 1 2 3
34 34 H 1.08999 * 109.47553 * 60.00081 * 3 2 1
35 35 H 1.09005 * 109.47144 * 299.99743 * 3 2 1
36 36 H 1.09001 * 109.46895 * 55.19243 * 4 3 2
37 37 H 1.08996 * 109.47535 * 295.19142 * 4 3 2
38 38 H 1.09003 * 110.50792 * 359.97438 * 9 7 6
39 39 H 1.09002 * 110.51399 * 122.57115 * 9 7 6
40 40 H 1.09005 * 110.37353 * 142.80615 * 10 9 7
41 41 H 1.08994 * 110.37423 * 265.03448 * 10 9 7
42 42 H 1.08997 * 109.47117 * 304.61562 * 14 12 11
43 43 H 1.09001 * 109.47579 * 64.61969 * 14 12 11
44 44 H 1.09005 * 109.46876 * 184.62273 * 14 12 11
45 45 H 1.09001 * 109.46898 * 289.84872 * 19 18 17
46 46 H 1.08997 * 109.46985 * 49.85169 * 19 18 17
47 47 H 1.09003 * 109.46954 * 169.85143 * 19 18 17
48 48 H 1.09008 * 109.47120 * 299.99945 * 22 20 18
49 49 H 1.09004 * 109.47284 * 59.99370 * 22 20 18
50 50 H 1.08994 * 109.47399 * 180.02562 * 22 20 18
51 51 H 0.97005 * 120.00082 * 179.97438 * 26 25 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0101 1.3055 0.0000
4 6 3.5354 1.1848 0.0006
5 7 4.1308 2.5183 -0.1153
6 6 4.3764 3.2156 -1.2656
7 6 4.0838 2.7536 -2.6698
8 1 3.6130 1.7707 -2.6571
9 6 5.3797 2.7223 -3.5106
10 6 5.1125 3.7308 -4.6498
11 8 4.1068 4.6239 -4.1237
12 6 3.1869 3.7773 -3.4006
13 1 2.5160 3.2682 -4.0924
14 6 2.3867 4.6015 -2.3899
15 7 4.9156 4.3512 -0.9227
16 7 5.0221 4.4202 0.3563
17 6 4.5532 3.3231 0.9025
18 7 4.5013 3.0344 2.2568
19 6 3.5332 3.9005 2.9430
20 6 5.8319 3.1431 2.8697
21 1 6.2085 4.1581 2.7430
22 6 6.7867 2.1569 2.1941
23 6 5.7357 2.8234 4.3393
24 1 4.7808 2.5696 4.7753
25 6 6.8657 2.8609 5.1284
26 7 8.0276 3.1753 4.5984
27 14 6.7467 2.4639 6.9498
28 1 5.3385 2.1435 7.2956
29 1 7.6109 1.2967 7.2596
30 1 7.1960 3.6367 7.7424
31 1 -0.3633 -1.0278 0.0005
32 1 -0.3634 0.5138 0.8900
33 1 -0.3633 0.5137 -0.8900
34 1 1.6885 1.8465 0.8900
35 1 1.6885 1.8464 -0.8900
36 1 3.8516 0.5712 -0.8429
37 1 3.8627 0.7202 0.9307
38 1 6.2320 3.0414 -2.9106
39 1 5.5495 1.7238 -3.9135
40 1 6.0218 4.2822 -4.8895
41 1 4.7387 3.2143 -5.5338
42 1 3.0726 5.1356 -1.7325
43 1 1.7598 5.3181 -2.9205
44 1 1.7577 3.9377 -1.7967
45 1 3.9169 4.9202 2.9750
46 1 2.5861 3.8853 2.4038
47 1 3.3785 3.5384 3.9595
48 1 6.4102 1.1418 2.3209
49 1 6.8562 2.3885 1.1313
50 1 7.7739 2.2372 2.6492
51 1 8.8226 3.2021 5.1536
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000842994040.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 21:51:33
Heat of formation + Delta-G solvation = 10.164105 kcal
Electronic energy + Delta-G solvation = -31895.430812 eV
Core-core repulsion = 27832.513532 eV
Total energy + Delta-G solvation = -4062.917280 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 338.211 amu
Computer time = 1.07 seconds
Orbital eigenvalues (eV)
-42.71000 -39.54383 -38.23438 -37.02429 -34.99540 -33.32658 -32.66898 -31.60713
-29.85028 -29.44134 -28.73435 -26.62322 -26.21611 -25.48627 -24.39284 -23.63025
-22.46651 -22.17653 -21.49686 -19.84401 -19.26454 -17.38543 -16.65028 -16.52460
-16.26461 -16.11629 -15.96727 -15.63689 -15.45816 -15.06459 -14.96949 -14.62639
-14.15367 -13.81912 -13.50799 -13.25930 -13.14912 -12.56956 -12.47111 -12.37101
-12.21208 -12.12807 -11.82438 -11.74548 -11.58967 -11.36264 -11.20396 -11.15716
-11.13721 -10.96703 -10.88137 -10.76782 -10.33665 -10.30409 -10.12137 -10.05016
-9.94881 -9.91758 -9.76546 -9.09706 -8.53816 -8.41096 -7.74204 -6.08631
-4.15324 2.05697 2.42575 3.25913 3.26785 3.34171 3.37277 3.58048
3.77361 4.20840 4.33260 4.45514 4.53066 4.63801 4.67753 4.74297
4.85173 4.94757 4.97907 5.06039 5.07296 5.11241 5.23570 5.24771
5.33564 5.37555 5.39139 5.44977 5.61188 5.66201 5.69042 5.72457
5.81348 5.92606 5.98857 6.11951 6.26158 6.31010 6.42217 6.55968
6.73547 6.76439 6.78525 6.87317 6.93551 7.10974 7.36496 7.62896
7.72716 7.89866 8.16576 8.42862 8.88366 9.22807 9.49743 10.98308
Molecular weight = 338.21amu
Principal moments of inertia in cm(-1)
A = 0.012131 B = 0.003774 C = 0.003180
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2307.672272 B = 7417.175570 C = 8802.360746
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.034 3.966
2 O -0.386 6.386
3 C 0.052 3.948
4 C 0.116 3.884
5 N -0.468 5.468
6 C 0.167 3.833
7 C -0.029 4.029
8 H 0.096 0.904
9 C -0.144 4.144
10 C 0.049 3.951
11 O -0.358 6.358
12 C 0.090 3.910
13 H 0.074 0.926
14 C -0.155 4.155
15 N -0.270 5.270
16 N -0.316 5.316
17 C 0.385 3.615
18 N -0.473 5.473
19 C 0.054 3.946
20 C 0.226 3.774
21 H 0.023 0.977
22 C -0.130 4.130
23 C -0.511 4.511
24 H 0.066 0.934
25 C 0.063 3.937
26 N -0.887 5.887
27 Si 0.900 3.100
28 H -0.272 1.272
29 H -0.284 1.284
30 H -0.284 1.284
31 H 0.089 0.911
32 H 0.044 0.956
33 H 0.041 0.959
34 H 0.061 0.939
35 H 0.051 0.949
36 H 0.094 0.906
37 H 0.117 0.883
38 H 0.086 0.914
39 H 0.081 0.919
40 H 0.094 0.906
41 H 0.058 0.942
42 H 0.086 0.914
43 H 0.061 0.939
44 H 0.058 0.942
45 H 0.037 0.963
46 H 0.040 0.960
47 H 0.087 0.913
48 H 0.031 0.969
49 H 0.002 0.998
50 H 0.092 0.908
51 H 0.262 0.738
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -13.309 -5.588 -15.736 21.353
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.063 4.063
2 O -0.304 6.304
3 C -0.026 4.026
4 C -0.009 4.009
5 N -0.163 5.163
6 C -0.099 4.099
7 C -0.050 4.050
8 H 0.114 0.886
9 C -0.183 4.183
10 C -0.028 4.028
11 O -0.276 6.276
12 C 0.032 3.968
13 H 0.092 0.908
14 C -0.213 4.213
15 N -0.110 5.110
16 N -0.159 5.159
17 C 0.030 3.970
18 N -0.201 5.201
19 C -0.094 4.094
20 C 0.121 3.879
21 H 0.041 0.959
22 C -0.188 4.188
23 C -0.550 4.550
24 H 0.085 0.915
25 C -0.140 4.140
26 N -0.526 5.526
27 Si 0.728 3.272
28 H -0.197 1.197
29 H -0.210 1.210
30 H -0.210 1.210
31 H 0.107 0.893
32 H 0.063 0.937
33 H 0.059 0.941
34 H 0.080 0.920
35 H 0.069 0.931
36 H 0.112 0.888
37 H 0.135 0.865
38 H 0.105 0.895
39 H 0.100 0.900
40 H 0.112 0.888
41 H 0.076 0.924
42 H 0.105 0.895
43 H 0.080 0.920
44 H 0.077 0.923
45 H 0.056 0.944
46 H 0.059 0.941
47 H 0.106 0.894
48 H 0.050 0.950
49 H 0.021 0.979
50 H 0.110 0.890
51 H 0.072 0.928
Dipole moment (debyes) X Y Z Total
from point charges -12.546 -4.615 -15.724 20.638
hybrid contribution -0.433 -0.959 1.134 1.547
sum -12.979 -5.574 -14.590 20.308
Atomic orbital electron populations
1.22768 0.80346 1.02969 1.00207 1.87813 1.20202 1.26843 1.95513
1.22762 0.93231 0.85351 1.01258 1.21452 0.91684 0.81343 1.06373
1.46222 1.47616 1.15874 1.06627 1.24050 1.05047 0.91949 0.88902
1.20931 0.97580 0.99613 0.86889 0.88551 1.23021 0.97646 1.00490
0.97116 1.23340 0.92687 0.91618 0.95114 1.89211 1.38164 1.30205
1.70063 1.22846 0.90986 0.90478 0.92530 0.90805 1.21988 1.00142
1.00334 0.98798 1.74015 1.15528 1.15469 1.06000 1.74801 1.20938
1.19484 1.00658 1.22866 0.96920 0.86693 0.90523 1.59267 1.14253
1.52797 0.93755 1.22169 0.92524 0.95236 0.99454 1.19432 0.79526
0.95852 0.93042 0.95942 1.21800 1.03352 0.98191 0.95456 1.21080
0.94796 1.47575 0.91528 0.91540 1.24914 0.95188 0.95000 0.98851
1.69914 0.98951 1.48036 1.35651 0.86407 0.78173 0.77944 0.84671
1.19682 1.20986 1.20993 0.89283 0.93722 0.94056 0.92044 0.93088
0.88761 0.86509 0.89479 0.89988 0.88821 0.92386 0.89546 0.91972
0.92323 0.94432 0.94144 0.89414 0.94967 0.97936 0.88979 0.92782
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.27 11.01 101.05 1.11 1.38 16
2 O -0.39 -4.32 10.70 -35.23 -0.38 -4.70 16
3 C 0.05 0.59 6.26 37.16 0.23 0.82 16
4 C 0.12 1.53 6.17 -4.04 -0.02 1.50 16
5 N -0.47 -7.66 2.81 -114.09 -0.32 -7.98 16
6 C 0.17 2.65 5.02 -154.02 -0.77 1.88 16
7 C -0.03 -0.33 3.44 -90.21 -0.31 -0.65 16
8 H 0.10 0.89 7.16 -51.93 -0.37 0.51 16
9 C -0.14 -1.54 6.73 -25.17 -0.17 -1.71 16
10 C 0.05 0.50 7.63 37.93 0.29 0.79 16
11 O -0.36 -4.75 11.34 -35.23 -0.40 -5.15 16
12 C 0.09 1.03 3.83 -25.95 -0.10 0.93 16
13 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16
14 C -0.16 -1.93 8.68 37.16 0.32 -1.61 16
15 N -0.27 -5.32 10.50 32.99 0.35 -4.98 16
16 N -0.32 -7.02 12.04 30.32 0.36 -6.65 16
17 C 0.39 7.81 5.04 -318.87 -1.61 6.20 16
18 N -0.47 -10.11 4.64 -176.08 -0.82 -10.93 16
19 C 0.05 1.04 9.10 60.07 0.55 1.59 16
20 C 0.23 5.71 1.96 -68.87 -0.13 5.57 16
21 H 0.02 0.66 8.03 -51.93 -0.42 0.24 16
22 C -0.13 -3.24 8.84 37.15 0.33 -2.91 16
23 C -0.51 -13.49 7.99 -34.44 -0.28 -13.77 16
24 H 0.07 1.71 6.40 -52.49 -0.34 1.37 16
25 C 0.06 1.69 5.30 -17.82 -0.09 1.59 16
26 N -0.89 -25.07 11.32 55.43 0.63 -24.44 16
27 Si 0.90 20.75 29.54 -169.99 -5.02 15.73 16
28 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16
29 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16
30 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16
31 H 0.09 0.57 8.14 -51.92 -0.42 0.15 16
32 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16
33 H 0.04 0.28 8.14 -51.93 -0.42 -0.15 16
34 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16
35 H 0.05 0.52 7.69 -51.93 -0.40 0.12 16
36 H 0.09 1.04 7.50 -51.93 -0.39 0.65 16
37 H 0.12 1.74 8.12 -51.93 -0.42 1.32 16
38 H 0.09 1.16 7.73 -51.93 -0.40 0.76 16
39 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16
40 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16
41 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16
42 H 0.09 1.39 5.80 -51.93 -0.30 1.08 16
43 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16
44 H 0.06 0.66 7.69 -51.93 -0.40 0.26 16
45 H 0.04 0.77 8.12 -51.93 -0.42 0.35 16
46 H 0.04 0.67 8.05 -51.93 -0.42 0.25 16
47 H 0.09 1.68 6.47 -51.93 -0.34 1.34 16
48 H 0.03 0.76 8.14 -51.92 -0.42 0.34 16
49 H 0.00 0.04 7.22 -51.93 -0.38 -0.33 16
50 H 0.09 2.52 6.07 -51.93 -0.32 2.20 16
51 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16
LS Contribution 403.02 15.07 6.07 6.07
Total: -1.00 -31.94 403.02 -8.84 -40.78
By element:
Atomic # 1 Polarization: 9.30 SS G_CDS: -8.67 Total: 0.64 kcal
Atomic # 6 Polarization: 2.27 SS G_CDS: -0.66 Total: 1.61 kcal
Atomic # 7 Polarization: -55.19 SS G_CDS: 0.20 Total: -54.99 kcal
Atomic # 8 Polarization: -9.07 SS G_CDS: -0.78 Total: -9.85 kcal
Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal
Total LS contribution 6.07 Total: 6.07 kcal
Total: -31.94 -8.84 -40.78 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000842994040.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 50.946 kcal
(2) G-P(sol) polarization free energy of solvation -31.938 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.008 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.844 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.782 kcal
(6) G-S(sol) free energy of system = (1) + (5) 10.164 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.07 seconds