Wall clock time and date at job start Tue Mar 31 2020 21:51:32
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42901 * 1
3 3 C 1.42900 * 113.99538 * 2 1
4 4 C 1.53001 * 109.46980 * 179.97438 * 3 2 1
5 5 N 1.46497 * 109.47016 * 175.18469 * 4 3 2
6 6 C 1.36738 * 127.14166 * 274.79135 * 5 4 3
7 7 C 1.50690 * 126.34711 * 359.96428 * 6 5 4
8 8 H 1.08999 * 110.45728 * 1.43783 * 7 6 5
9 9 C 1.54506 * 110.51595 * 238.83484 * 7 6 5
10 10 C 1.54477 * 104.06552 * 241.35598 * 9 7 6
11 11 O 1.44428 * 104.80267 * 23.97563 * 10 9 7
12 12 C 1.44423 * 105.27242 * 319.48824 * 11 10 9
13 13 H 1.08995 * 110.37187 * 281.67996 * 12 11 10
14 14 C 1.53002 * 110.36970 * 159.34382 * 12 11 10
15 15 N 1.30302 * 107.30473 * 180.23065 * 6 5 4
16 16 N 1.28528 * 110.05458 * 359.77081 * 15 6 5
17 17 C 1.31220 * 109.86037 * 0.02562 * 16 15 6
18 18 N 1.38576 * 126.47322 * 179.97438 * 17 16 15
19 19 C 1.46907 * 110.99777 * 68.42985 * 18 17 16
20 20 C 1.46900 * 111.00277 * 304.47491 * 18 17 16
21 21 H 1.08998 * 109.46965 * 59.99912 * 20 18 17
22 22 C 1.52995 * 109.47143 * 300.00098 * 20 18 17
23 23 C 1.50700 * 109.47019 * 179.97438 * 20 18 17
24 24 H 1.07996 * 120.00168 * 359.72408 * 23 20 18
25 25 C 1.37878 * 119.99847 * 180.02562 * 23 20 18
26 26 N 1.31519 * 119.99715 * 359.97438 * 25 23 20
27 27 Si 1.86800 * 120.00155 * 180.02562 * 25 23 20
28 28 H 1.48497 * 109.47026 * 359.97438 * 27 25 23
29 29 H 1.48500 * 109.47339 * 120.00116 * 27 25 23
30 30 H 1.48506 * 109.46876 * 239.99900 * 27 25 23
31 31 H 1.09008 * 109.46750 * 180.02562 * 1 2 3
32 32 H 1.09000 * 109.47435 * 299.99802 * 1 2 3
33 33 H 1.08998 * 109.47136 * 60.00727 * 1 2 3
34 34 H 1.08999 * 109.47553 * 60.00081 * 3 2 1
35 35 H 1.09005 * 109.47144 * 299.99743 * 3 2 1
36 36 H 1.09001 * 109.46895 * 55.19243 * 4 3 2
37 37 H 1.08996 * 109.47535 * 295.19142 * 4 3 2
38 38 H 1.09003 * 110.50792 * 359.97438 * 9 7 6
39 39 H 1.09002 * 110.51399 * 122.57115 * 9 7 6
40 40 H 1.09005 * 110.37353 * 142.80615 * 10 9 7
41 41 H 1.08994 * 110.37423 * 265.03448 * 10 9 7
42 42 H 1.08997 * 109.47117 * 304.61562 * 14 12 11
43 43 H 1.09001 * 109.47579 * 64.61969 * 14 12 11
44 44 H 1.09005 * 109.46876 * 184.62273 * 14 12 11
45 45 H 1.09001 * 109.46898 * 289.84872 * 19 18 17
46 46 H 1.08997 * 109.46985 * 49.85169 * 19 18 17
47 47 H 1.09003 * 109.46954 * 169.85143 * 19 18 17
48 48 H 1.09008 * 109.47120 * 299.99945 * 22 20 18
49 49 H 1.09004 * 109.47284 * 59.99370 * 22 20 18
50 50 H 1.08994 * 109.47399 * 180.02562 * 22 20 18
51 51 H 0.97005 * 120.00082 * 179.97438 * 26 25 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0101 1.3055 0.0000
4 6 3.5354 1.1848 0.0006
5 7 4.1308 2.5183 -0.1153
6 6 4.3764 3.2156 -1.2656
7 6 4.0838 2.7536 -2.6698
8 1 3.6130 1.7707 -2.6571
9 6 5.3797 2.7223 -3.5106
10 6 5.1125 3.7308 -4.6498
11 8 4.1068 4.6239 -4.1237
12 6 3.1869 3.7773 -3.4006
13 1 2.5160 3.2682 -4.0924
14 6 2.3867 4.6015 -2.3899
15 7 4.9156 4.3512 -0.9227
16 7 5.0221 4.4202 0.3563
17 6 4.5532 3.3231 0.9025
18 7 4.5013 3.0344 2.2568
19 6 3.5332 3.9005 2.9430
20 6 5.8319 3.1431 2.8697
21 1 6.2085 4.1581 2.7430
22 6 6.7867 2.1569 2.1941
23 6 5.7357 2.8234 4.3393
24 1 4.7808 2.5696 4.7753
25 6 6.8657 2.8609 5.1284
26 7 8.0276 3.1753 4.5984
27 14 6.7467 2.4639 6.9498
28 1 5.3385 2.1435 7.2956
29 1 7.6109 1.2967 7.2596
30 1 7.1960 3.6367 7.7424
31 1 -0.3633 -1.0278 0.0005
32 1 -0.3634 0.5138 0.8900
33 1 -0.3633 0.5137 -0.8900
34 1 1.6885 1.8465 0.8900
35 1 1.6885 1.8464 -0.8900
36 1 3.8516 0.5712 -0.8429
37 1 3.8627 0.7202 0.9307
38 1 6.2320 3.0414 -2.9106
39 1 5.5495 1.7238 -3.9135
40 1 6.0218 4.2822 -4.8895
41 1 4.7387 3.2143 -5.5338
42 1 3.0726 5.1356 -1.7325
43 1 1.7598 5.3181 -2.9205
44 1 1.7577 3.9377 -1.7967
45 1 3.9169 4.9202 2.9750
46 1 2.5861 3.8853 2.4038
47 1 3.3785 3.5384 3.9595
48 1 6.4102 1.1418 2.3209
49 1 6.8562 2.3885 1.1313
50 1 7.7739 2.2372 2.6492
51 1 8.8226 3.2021 5.1536
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000842994040.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 21:51:32
Heat of formation + Delta-G solvation = -10.900364 kcal
Electronic energy + Delta-G solvation = -31896.344236 eV
Core-core repulsion = 27832.513532 eV
Total energy + Delta-G solvation = -4063.830704 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 338.211 amu
Computer time = 1.06 seconds
Orbital eigenvalues (eV)
-44.11298 -40.46463 -39.05869 -38.76378 -36.22590 -35.00363 -34.01498 -32.46685
-31.40862 -30.88100 -30.15842 -27.66156 -27.22957 -27.05688 -26.13740 -24.68407
-23.81145 -23.09086 -22.93724 -21.24080 -20.61053 -18.60580 -18.32893 -17.59967
-17.48167 -17.27143 -17.06224 -16.62702 -16.53104 -16.38447 -16.24885 -15.85408
-15.54655 -15.31885 -14.86057 -14.41541 -14.23827 -14.17082 -13.74419 -13.49673
-13.36746 -13.17419 -13.09402 -12.97245 -12.82705 -12.73833 -12.64458 -12.56010
-12.29391 -12.26837 -12.21787 -12.15562 -12.03069 -11.98106 -11.85939 -11.48476
-11.12824 -11.07465 -10.74372 -10.70107 -10.59812 -9.88693 -9.54329 -8.15484
-6.29806 0.70470 1.15764 1.44003 1.45405 1.57496 1.81471 2.40066
2.65732 2.93870 3.00641 3.15876 3.28247 3.51810 3.58557 3.77579
3.84186 3.94186 4.09423 4.10491 4.18061 4.24839 4.35372 4.37124
4.42783 4.49575 4.51953 4.55992 4.59383 4.60627 4.68308 4.69923
4.77459 4.83520 4.87168 4.88638 4.91412 4.93087 4.98690 5.00851
5.10064 5.12166 5.28271 5.36065 5.54834 5.63059 5.84579 5.94461
5.98187 6.05660 6.13077 6.60337 6.81057 7.39626 7.78278 8.91952
Molecular weight = 338.21amu
Principal moments of inertia in cm(-1)
A = 0.012131 B = 0.003774 C = 0.003180
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2307.672272 B = 7417.175570 C = 8802.360746
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.026 3.974
2 O -0.400 6.400
3 C 0.063 3.937
4 C 0.110 3.890
5 N -0.461 5.461
6 C 0.196 3.804
7 C -0.033 4.033
8 H 0.135 0.865
9 C -0.142 4.142
10 C 0.048 3.952
11 O -0.391 6.391
12 C 0.092 3.908
13 H 0.116 0.884
14 C -0.156 4.156
15 N -0.309 5.309
16 N -0.360 5.360
17 C 0.366 3.634
18 N -0.466 5.466
19 C 0.058 3.942
20 C 0.237 3.763
21 H -0.028 1.028
22 C -0.110 4.110
23 C -0.521 4.521
24 H 0.074 0.926
25 C 0.013 3.987
26 N -0.922 5.922
27 Si 0.969 3.031
28 H -0.259 1.259
29 H -0.280 1.280
30 H -0.284 1.284
31 H 0.104 0.896
32 H 0.043 0.957
33 H 0.058 0.942
34 H 0.047 0.953
35 H 0.070 0.930
36 H 0.125 0.875
37 H 0.097 0.903
38 H 0.051 0.949
39 H 0.118 0.882
40 H 0.089 0.911
41 H 0.094 0.906
42 H 0.044 0.956
43 H 0.070 0.930
44 H 0.071 0.929
45 H 0.015 0.985
46 H 0.068 0.932
47 H 0.089 0.911
48 H 0.040 0.960
49 H -0.002 1.002
50 H 0.066 0.934
51 H 0.263 0.737
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -15.783 -8.126 -17.386 24.848
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.070 4.070
2 O -0.318 6.318
3 C -0.015 4.015
4 C -0.012 4.012
5 N -0.155 5.155
6 C -0.072 4.072
7 C -0.054 4.054
8 H 0.152 0.848
9 C -0.180 4.180
10 C -0.029 4.029
11 O -0.311 6.311
12 C 0.034 3.966
13 H 0.134 0.866
14 C -0.213 4.213
15 N -0.148 5.148
16 N -0.203 5.203
17 C 0.008 3.992
18 N -0.192 5.192
19 C -0.090 4.090
20 C 0.131 3.869
21 H -0.010 1.010
22 C -0.168 4.168
23 C -0.559 4.559
24 H 0.092 0.908
25 C -0.186 4.186
26 N -0.561 5.561
27 Si 0.794 3.206
28 H -0.183 1.183
29 H -0.206 1.206
30 H -0.210 1.210
31 H 0.123 0.877
32 H 0.062 0.938
33 H 0.076 0.924
34 H 0.065 0.935
35 H 0.088 0.912
36 H 0.143 0.857
37 H 0.116 0.884
38 H 0.070 0.930
39 H 0.136 0.864
40 H 0.107 0.893
41 H 0.112 0.888
42 H 0.063 0.937
43 H 0.089 0.911
44 H 0.090 0.910
45 H 0.034 0.966
46 H 0.087 0.913
47 H 0.108 0.892
48 H 0.059 0.941
49 H 0.017 0.983
50 H 0.085 0.915
51 H 0.072 0.928
Dipole moment (debyes) X Y Z Total
from point charges -15.053 -7.166 -17.392 24.092
hybrid contribution 0.290 -0.155 1.514 1.549
sum -14.763 -7.322 -15.878 22.884
Atomic orbital electron populations
1.22994 0.78601 1.04341 1.01024 1.87788 1.22049 1.26373 1.95631
1.22561 0.91688 0.85758 1.01484 1.21695 0.93122 0.79658 1.06765
1.46305 1.47106 1.16510 1.05593 1.24932 1.01542 0.90324 0.90369
1.21355 0.98703 1.01463 0.83900 0.84755 1.23038 0.95673 1.02585
0.96728 1.23527 0.92272 0.91211 0.95870 1.89186 1.39263 1.32055
1.70551 1.23037 0.90951 0.89926 0.92719 0.86640 1.21967 0.99750
1.00790 0.98786 1.73947 1.17958 1.17931 1.04958 1.74678 1.22183
1.21233 1.02203 1.22679 0.98606 0.87459 0.90410 1.59166 1.12350
1.53035 0.94638 1.22171 0.93156 0.93687 0.99942 1.19069 0.81525
0.92926 0.93404 1.01042 1.21540 1.01968 0.98470 0.94830 1.21358
0.95152 1.47275 0.92142 0.90806 1.25782 0.94749 0.94727 1.03372
1.70065 0.99697 1.49014 1.37315 0.85337 0.78714 0.77531 0.79023
1.18304 1.20605 1.21023 0.87721 0.93786 0.92362 0.93503 0.91206
0.85747 0.88424 0.93041 0.86376 0.89278 0.88811 0.93710 0.91076
0.91042 0.96621 0.91291 0.89201 0.94140 0.98262 0.91541 0.92787
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.33 11.01 113.37 1.25 1.58 16
2 O -0.40 -7.73 10.70 -148.98 -1.59 -9.32 16
3 C 0.06 1.27 6.26 71.98 0.45 1.72 16
4 C 0.11 2.68 6.17 86.38 0.53 3.21 16
5 N -0.46 -14.78 2.81 -514.86 -1.45 -16.23 16
6 C 0.20 6.08 5.02 137.63 0.69 6.77 16
7 C -0.03 -0.67 3.44 -10.53 -0.04 -0.70 16
8 H 0.13 1.71 7.16 -2.39 -0.02 1.70 16
9 C -0.14 -2.65 6.73 31.61 0.21 -2.44 16
10 C 0.05 0.83 7.63 72.48 0.55 1.39 16
11 O -0.39 -9.66 11.34 -148.98 -1.69 -11.35 16
12 C 0.09 1.79 3.83 31.10 0.12 1.91 16
13 H 0.12 1.38 8.14 -2.39 -0.02 1.36 16
14 C -0.16 -3.61 8.68 71.98 0.62 -2.99 16
15 N -0.31 -12.62 10.50 -49.54 -0.52 -13.14 16
16 N -0.36 -16.86 12.04 -58.00 -0.70 -17.56 16
17 C 0.37 15.24 5.04 260.11 1.31 16.55 16
18 N -0.47 -20.48 4.64 -710.99 -3.30 -23.78 16
19 C 0.06 2.29 9.10 127.69 1.16 3.46 16
20 C 0.24 12.51 1.96 44.17 0.09 12.59 16
21 H -0.03 -1.75 8.03 -2.39 -0.02 -1.77 16
22 C -0.11 -5.70 8.84 71.98 0.64 -5.07 16
23 C -0.52 -28.08 7.99 25.60 0.20 -27.88 16
24 H 0.07 3.79 6.40 -2.91 -0.02 3.78 16
25 C 0.01 0.70 5.30 84.65 0.45 1.15 16
26 N -0.92 -53.82 11.32 21.45 0.24 -53.57 16
27 Si 0.97 42.84 29.54 68.60 2.03 44.87 16
28 H -0.26 -10.83 7.11 99.48 0.71 -10.12 16
29 H -0.28 -12.17 7.11 99.48 0.71 -11.47 16
30 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16
31 H 0.10 1.00 8.14 -2.38 -0.02 0.98 16
32 H 0.04 0.57 8.14 -2.39 -0.02 0.55 16
33 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16
34 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16
35 H 0.07 1.15 7.69 -2.38 -0.02 1.13 16
36 H 0.12 2.27 7.50 -2.39 -0.02 2.25 16
37 H 0.10 2.81 8.12 -2.39 -0.02 2.79 16
38 H 0.05 1.35 7.73 -2.39 -0.02 1.33 16
39 H 0.12 1.36 8.14 -2.39 -0.02 1.34 16
40 H 0.09 1.60 8.14 -2.38 -0.02 1.58 16
41 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16
42 H 0.04 1.44 5.80 -2.39 -0.01 1.43 16
43 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16
44 H 0.07 1.42 7.69 -2.38 -0.02 1.40 16
45 H 0.01 0.66 8.12 -2.39 -0.02 0.64 16
46 H 0.07 2.30 8.05 -2.39 -0.02 2.28 16
47 H 0.09 3.47 6.47 -2.39 -0.02 3.46 16
48 H 0.04 1.97 8.14 -2.38 -0.02 1.95 16
49 H 0.00 -0.09 7.22 -2.39 -0.02 -0.10 16
50 H 0.07 3.80 6.07 -2.39 -0.01 3.78 16
51 H 0.26 14.55 8.31 -92.70 -0.77 13.77 16
Total: -1.00 -74.75 403.02 2.18 -72.58
By element:
Atomic # 1 Polarization: 15.35 SS G_CDS: 0.91 Total: 16.26 kcal
Atomic # 6 Polarization: 3.00 SS G_CDS: 8.24 Total: 11.25 kcal
Atomic # 7 Polarization: -118.56 SS G_CDS: -5.72 Total: -124.28 kcal
Atomic # 8 Polarization: -17.39 SS G_CDS: -3.28 Total: -20.68 kcal
Atomic # 14 Polarization: 42.84 SS G_CDS: 2.03 Total: 44.87 kcal
Total: -74.75 2.18 -72.58 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000842994040.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 61.675 kcal
(2) G-P(sol) polarization free energy of solvation -74.753 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.077 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.177 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.576 kcal
(6) G-S(sol) free energy of system = (1) + (5) -10.900 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.06 seconds