Wall clock time and date at job start Tue Mar 31 2020 21:51:40
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42899 * 1
3 3 C 1.42901 * 113.99923 * 2 1
4 4 C 1.53003 * 109.46796 * 180.02562 * 3 2 1
5 5 N 1.46497 * 109.47041 * 185.15482 * 4 3 2
6 6 C 1.36744 * 127.13620 * 275.79273 * 5 4 3
7 7 C 1.50698 * 126.34537 * 359.96358 * 6 5 4
8 8 H 1.09000 * 110.45737 * 1.15404 * 7 6 5
9 9 C 1.54510 * 110.51038 * 238.54718 * 7 6 5
10 10 C 1.54481 * 104.06210 * 241.35511 * 9 7 6
11 11 O 1.44429 * 104.80143 * 23.97849 * 10 9 7
12 12 C 1.44429 * 105.27614 * 319.48761 * 11 10 9
13 13 H 1.08998 * 110.36756 * 281.67993 * 12 11 10
14 14 C 1.53005 * 110.36890 * 159.34661 * 12 11 10
15 15 N 1.30293 * 107.30566 * 179.83441 * 6 5 4
16 16 N 1.28532 * 110.05479 * 0.44119 * 15 6 5
17 17 C 1.31221 * 109.85776 * 359.71971 * 16 15 6
18 18 N 1.38577 * 126.47174 * 179.97438 * 17 16 15
19 19 C 1.46902 * 111.00047 * 113.32799 * 18 17 16
20 20 C 1.46899 * 111.00182 * 349.37886 * 18 17 16
21 21 H 1.08999 * 109.46710 * 309.99387 * 20 18 17
22 22 C 1.52990 * 109.47373 * 69.99789 * 20 18 17
23 23 C 1.50698 * 109.47291 * 190.00037 * 20 18 17
24 24 H 1.08003 * 119.99947 * 359.97438 * 23 20 18
25 25 C 1.37876 * 120.00126 * 179.97438 * 23 20 18
26 26 N 1.31508 * 120.00068 * 359.97438 * 25 23 20
27 27 Si 1.86803 * 119.99709 * 179.97438 * 25 23 20
28 28 H 1.48498 * 109.46969 * 90.00293 * 27 25 23
29 29 H 1.48505 * 109.46928 * 209.99762 * 27 25 23
30 30 H 1.48499 * 109.47717 * 329.99829 * 27 25 23
31 31 H 1.09009 * 109.46900 * 59.99797 * 1 2 3
32 32 H 1.08998 * 109.47130 * 179.97438 * 1 2 3
33 33 H 1.09001 * 109.47203 * 300.00353 * 1 2 3
34 34 H 1.09002 * 109.47219 * 299.99296 * 3 2 1
35 35 H 1.08993 * 109.47225 * 60.00286 * 3 2 1
36 36 H 1.09002 * 109.46794 * 305.15099 * 4 3 2
37 37 H 1.08999 * 109.47339 * 65.15351 * 4 3 2
38 38 H 1.08994 * 110.51149 * 359.97438 * 9 7 6
39 39 H 1.09001 * 110.51176 * 122.57738 * 9 7 6
40 40 H 1.08999 * 110.37511 * 142.80735 * 10 9 7
41 41 H 1.08999 * 110.37165 * 265.03935 * 10 9 7
42 42 H 1.09000 * 109.46618 * 304.61243 * 14 12 11
43 43 H 1.08997 * 109.47365 * 64.61500 * 14 12 11
44 44 H 1.09004 * 109.46377 * 184.62260 * 14 12 11
45 45 H 1.09006 * 109.47119 * 67.27041 * 19 18 17
46 46 H 1.08997 * 109.47445 * 187.27512 * 19 18 17
47 47 H 1.09009 * 109.47184 * 307.27827 * 19 18 17
48 48 H 1.08999 * 109.47531 * 60.00100 * 22 20 18
49 49 H 1.09009 * 109.47217 * 180.02562 * 22 20 18
50 50 H 1.09008 * 109.47244 * 299.99867 * 22 20 18
51 51 H 0.97002 * 120.00091 * 179.97438 * 26 25 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0102 1.3055 0.0000
4 6 3.5355 1.1846 -0.0006
5 7 4.1310 2.5173 0.1235
6 6 4.3733 3.4103 -0.8834
7 6 4.0762 3.2083 -2.3470
8 1 3.6096 2.2368 -2.5105
9 6 5.3684 3.3361 -3.1844
10 6 5.0915 4.5326 -4.1215
11 8 4.0843 5.3107 -3.4387
12 6 3.1715 4.3426 -2.8772
13 1 2.4995 3.9636 -3.6472
14 6 2.3723 4.9664 -1.7312
15 7 4.9060 4.4691 -0.3425
16 7 5.0245 4.3036 0.9266
17 6 4.5643 3.1228 1.2669
18 7 4.5262 2.5909 2.5460
19 6 3.1411 2.4309 3.0086
20 6 5.3019 3.4153 3.4823
21 1 6.2902 3.6072 3.0645
22 6 4.5786 4.7437 3.7122
23 6 5.4439 2.6871 4.7940
24 1 5.0017 1.7098 4.9197
25 6 6.1382 3.2685 5.8336
26 7 6.6771 4.4582 5.6804
27 14 6.3135 2.3660 7.4598
28 1 7.5423 1.5326 7.4334
29 1 6.4083 3.3526 8.5657
30 1 5.1295 1.4956 7.6732
31 1 -0.3633 0.5139 -0.8900
32 1 -0.3633 -1.0276 -0.0005
33 1 -0.3634 0.5139 0.8900
34 1 1.6887 1.8464 -0.8901
35 1 1.6886 1.8463 0.8899
36 1 3.8512 0.5659 0.8394
37 1 3.8632 0.7256 -0.9334
38 1 6.2220 3.5459 -2.5398
39 1 5.5407 2.4279 -3.7619
40 1 5.9971 5.1230 -4.2609
41 1 4.7158 4.1826 -5.0829
42 1 3.0590 5.3763 -0.9905
43 1 1.7399 5.7639 -2.1211
44 1 1.7489 4.2031 -1.2654
45 1 2.6459 1.6632 2.4140
46 1 3.1403 2.1350 4.0576
47 1 2.6094 3.3760 2.8972
48 1 3.5903 4.5518 4.1299
49 1 5.1545 5.3556 4.4066
50 1 4.4760 5.2705 2.7634
51 1 7.1653 4.8674 6.4120
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000842994044.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 21:51:40
Heat of formation + Delta-G solvation = 17.379590 kcal
Electronic energy + Delta-G solvation = -31959.023683 eV
Core-core repulsion = 27896.419290 eV
Total energy + Delta-G solvation = -4062.604393 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 338.211 amu
Computer time = 1.02 seconds
Orbital eigenvalues (eV)
-42.69807 -39.54151 -38.32734 -37.29551 -35.08324 -33.30707 -32.57383 -31.59432
-29.96195 -29.09125 -28.56190 -26.70673 -26.25076 -25.29267 -25.04818 -23.70909
-22.40415 -22.15902 -21.41577 -19.77511 -19.25584 -17.45656 -16.66777 -16.56078
-16.27932 -16.10077 -15.85199 -15.60723 -15.38749 -15.28550 -14.98763 -14.65980
-14.21215 -13.88308 -13.52174 -13.37507 -13.04318 -12.63275 -12.47259 -12.44916
-12.20186 -12.01778 -11.84157 -11.70110 -11.53240 -11.40486 -11.30954 -11.15249
-11.13861 -10.97005 -10.90976 -10.75546 -10.46256 -10.20826 -10.08326 -9.98122
-9.91436 -9.80227 -9.73415 -8.93155 -8.87866 -8.40165 -7.42574 -6.03424
-4.10623 2.09510 2.40846 3.29319 3.33018 3.35860 3.37597 3.52517
3.78317 4.22828 4.34267 4.44526 4.47167 4.61943 4.64716 4.66335
4.84953 4.92609 4.94907 5.00919 5.05304 5.06802 5.23009 5.26193
5.28021 5.34811 5.35902 5.41863 5.47668 5.63391 5.65721 5.72015
5.79319 5.91527 5.95732 5.99752 6.12927 6.29716 6.33995 6.47008
6.70969 6.79052 6.80628 6.95790 7.09340 7.21775 7.45348 7.62427
7.74886 7.97296 8.27833 8.44355 8.91302 9.33881 9.53986 11.02858
Molecular weight = 338.21amu
Principal moments of inertia in cm(-1)
A = 0.011978 B = 0.003795 C = 0.003123
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2337.095996 B = 7376.689922 C = 8964.983085
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.033 3.967
2 O -0.385 6.385
3 C 0.044 3.956
4 C 0.114 3.886
5 N -0.483 5.483
6 C 0.158 3.842
7 C -0.026 4.026
8 H 0.094 0.906
9 C -0.144 4.144
10 C 0.049 3.951
11 O -0.357 6.357
12 C 0.090 3.910
13 H 0.073 0.927
14 C -0.155 4.155
15 N -0.266 5.266
16 N -0.312 5.312
17 C 0.386 3.614
18 N -0.454 5.454
19 C 0.033 3.967
20 C 0.229 3.771
21 H 0.052 0.948
22 C -0.171 4.171
23 C -0.514 4.514
24 H 0.063 0.937
25 C 0.064 3.936
26 N -0.884 5.884
27 Si 0.899 3.101
28 H -0.280 1.280
29 H -0.287 1.287
30 H -0.274 1.274
31 H 0.042 0.958
32 H 0.090 0.910
33 H 0.045 0.955
34 H 0.054 0.946
35 H 0.062 0.938
36 H 0.113 0.887
37 H 0.096 0.904
38 H 0.086 0.914
39 H 0.080 0.920
40 H 0.093 0.907
41 H 0.057 0.943
42 H 0.087 0.913
43 H 0.061 0.939
44 H 0.057 0.943
45 H 0.050 0.950
46 H 0.096 0.904
47 H 0.030 0.970
48 H 0.021 0.979
49 H 0.090 0.910
50 H 0.039 0.961
51 H 0.262 0.738
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -11.629 -6.927 -18.101 22.603
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.064 4.064
2 O -0.303 6.303
3 C -0.034 4.034
4 C -0.011 4.011
5 N -0.182 5.182
6 C -0.108 4.108
7 C -0.048 4.048
8 H 0.112 0.888
9 C -0.182 4.182
10 C -0.028 4.028
11 O -0.276 6.276
12 C 0.031 3.969
13 H 0.091 0.909
14 C -0.212 4.212
15 N -0.105 5.105
16 N -0.156 5.156
17 C 0.031 3.969
18 N -0.178 5.178
19 C -0.115 4.115
20 C 0.125 3.875
21 H 0.070 0.930
22 C -0.230 4.230
23 C -0.552 4.552
24 H 0.081 0.919
25 C -0.139 4.139
26 N -0.522 5.522
27 Si 0.727 3.273
28 H -0.206 1.206
29 H -0.212 1.212
30 H -0.199 1.199
31 H 0.060 0.940
32 H 0.108 0.892
33 H 0.063 0.937
34 H 0.072 0.928
35 H 0.081 0.919
36 H 0.131 0.869
37 H 0.114 0.886
38 H 0.105 0.895
39 H 0.099 0.901
40 H 0.112 0.888
41 H 0.076 0.924
42 H 0.106 0.894
43 H 0.080 0.920
44 H 0.076 0.924
45 H 0.069 0.931
46 H 0.115 0.885
47 H 0.049 0.951
48 H 0.041 0.959
49 H 0.108 0.892
50 H 0.057 0.943
51 H 0.072 0.928
Dipole moment (debyes) X Y Z Total
from point charges -10.592 -5.820 -17.791 21.507
hybrid contribution -0.906 -1.253 0.905 1.791
sum -11.498 -7.073 -16.886 21.619
Atomic orbital electron populations
1.22785 0.80239 1.03060 1.00283 1.87817 1.20292 1.26687 1.95523
1.22929 0.93344 0.85565 1.01527 1.21463 0.91652 0.82016 1.05925
1.46057 1.49545 1.15460 1.07100 1.23950 1.06082 0.88876 0.91940
1.20888 0.97427 1.00364 0.86088 0.88776 1.23019 0.97750 0.99315
0.98158 1.23338 0.92652 0.92379 0.94420 1.89219 1.38443 1.29021
1.70914 1.22853 0.91052 0.87988 0.94979 0.90915 1.21984 1.00179
1.00866 0.98216 1.74014 1.14972 1.19818 1.01685 1.74972 1.24246
1.11702 1.04716 1.23282 0.97160 0.88340 0.88119 1.59291 1.13186
1.48486 0.96804 1.22480 0.86762 0.99260 1.02966 1.19374 0.91808
0.87891 0.88391 0.93038 1.22412 0.99054 1.00639 1.00923 1.21012
1.34990 1.03349 0.95870 0.91857 1.24887 0.95314 0.94928 0.98738
1.69919 1.35017 1.14776 1.32479 0.86485 0.78507 0.79312 0.82985
1.20639 1.21239 1.19929 0.93977 0.89199 0.93682 0.92777 0.91942
0.86901 0.88551 0.89479 0.90103 0.88841 0.92449 0.89437 0.92016
0.92397 0.93142 0.88529 0.95101 0.95947 0.89173 0.94260 0.92762
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.25 11.01 101.05 1.11 1.36 16
2 O -0.39 -4.07 10.70 -35.23 -0.38 -4.44 16
3 C 0.04 0.47 5.89 37.16 0.22 0.69 16
4 C 0.11 1.39 5.36 -4.04 -0.02 1.37 16
5 N -0.48 -7.68 2.81 -114.08 -0.32 -8.00 16
6 C 0.16 2.48 5.02 -154.01 -0.77 1.70 16
7 C -0.03 -0.30 3.45 -90.21 -0.31 -0.61 16
8 H 0.09 0.82 7.19 -51.93 -0.37 0.45 16
9 C -0.14 -1.48 6.73 -25.16 -0.17 -1.65 16
10 C 0.05 0.49 7.63 37.93 0.29 0.78 16
11 O -0.36 -4.77 11.34 -35.23 -0.40 -5.17 16
12 C 0.09 1.02 3.83 -25.95 -0.10 0.92 16
13 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16
14 C -0.16 -1.97 8.68 37.16 0.32 -1.65 16
15 N -0.27 -5.27 10.49 32.99 0.35 -4.92 16
16 N -0.31 -7.02 9.35 30.31 0.28 -6.74 16
17 C 0.39 7.84 6.66 -318.87 -2.12 5.71 16
18 N -0.45 -9.72 4.69 -176.08 -0.83 -10.55 16
19 C 0.03 0.60 8.18 60.07 0.49 1.09 16
20 C 0.23 5.85 2.01 -68.87 -0.14 5.71 16
21 H 0.05 1.51 7.92 -51.93 -0.41 1.10 16
22 C -0.17 -4.31 8.19 37.15 0.30 -4.00 16
23 C -0.51 -13.73 7.80 -34.44 -0.27 -14.00 16
24 H 0.06 1.65 7.19 -52.48 -0.38 1.28 16
25 C 0.06 1.74 5.30 -17.82 -0.09 1.64 16
26 N -0.88 -25.23 11.32 55.43 0.63 -24.60 16
27 Si 0.90 20.95 29.54 -169.99 -5.02 15.93 16
28 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16
29 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16
30 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16
31 H 0.04 0.26 8.14 -51.92 -0.42 -0.16 16
32 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16
33 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16
34 H 0.05 0.51 8.09 -51.93 -0.42 0.09 16
35 H 0.06 0.74 6.18 -51.93 -0.32 0.42 16
36 H 0.11 1.51 7.84 -51.93 -0.41 1.10 16
37 H 0.10 0.95 7.54 -51.93 -0.39 0.56 16
38 H 0.09 1.12 7.73 -51.93 -0.40 0.72 16
39 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16
40 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16
41 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16
42 H 0.09 1.45 5.80 -51.93 -0.30 1.15 16
43 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16
44 H 0.06 0.66 8.09 -51.93 -0.42 0.24 16
45 H 0.05 0.77 4.80 -51.93 -0.25 0.52 16
46 H 0.10 1.86 6.63 -51.93 -0.34 1.52 16
47 H 0.03 0.57 6.87 -51.92 -0.36 0.21 16
48 H 0.02 0.52 6.58 -51.93 -0.34 0.18 16
49 H 0.09 2.50 6.07 -51.92 -0.32 2.19 16
50 H 0.04 0.97 5.98 -51.92 -0.31 0.66 16
51 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16
LS Contribution 391.26 15.07 5.90 5.90
Total: -1.00 -32.23 391.26 -9.31 -41.55
By element:
Atomic # 1 Polarization: 10.24 SS G_CDS: -8.26 Total: 1.98 kcal
Atomic # 6 Polarization: 0.33 SS G_CDS: -1.26 Total: -0.93 kcal
Atomic # 7 Polarization: -54.92 SS G_CDS: 0.11 Total: -54.81 kcal
Atomic # 8 Polarization: -8.84 SS G_CDS: -0.78 Total: -9.61 kcal
Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal
Total LS contribution 5.90 Total: 5.90 kcal
Total: -32.23 -9.31 -41.55 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000842994044.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 58.925 kcal
(2) G-P(sol) polarization free energy of solvation -32.233 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.692 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.313 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.545 kcal
(6) G-S(sol) free energy of system = (1) + (5) 17.380 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.02 seconds