Wall clock time and date at job start Tue Mar 31 2020 21:38:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42901 * 114.00013 * 2 1 4 4 C 1.52993 * 109.46855 * 179.97438 * 3 2 1 5 5 N 1.46508 * 109.46919 * 176.23322 * 4 3 2 6 6 C 1.36733 * 127.13619 * 89.37511 * 5 4 3 7 7 C 1.50694 * 126.34952 * 359.94341 * 6 5 4 8 8 H 1.08998 * 110.55466 * 13.58038 * 7 6 5 9 9 C 1.54994 * 110.62026 * 250.52186 * 7 6 5 10 10 C 1.54810 * 102.09221 * 204.47518 * 9 7 6 11 11 C 1.54100 * 104.19022 * 20.88310 * 10 9 7 12 12 H 1.09002 * 109.87961 * 242.60740 * 11 10 9 13 13 C 1.52999 * 110.00456 * 121.52089 * 11 10 9 14 14 O 1.43744 * 107.28923 * 2.03020 * 11 10 9 15 15 N 1.30304 * 107.30444 * 179.97438 * 6 5 4 16 16 N 1.28530 * 110.05068 * 0.02562 * 15 6 5 17 17 C 1.31216 * 109.86218 * 359.74305 * 16 15 6 18 18 N 1.38579 * 126.47596 * 180.25984 * 17 16 15 19 19 C 1.46902 * 110.99938 * 295.63374 * 18 17 16 20 20 C 1.46893 * 111.00047 * 59.58854 * 18 17 16 21 21 H 1.08999 * 109.47533 * 300.00349 * 20 18 17 22 22 C 1.53001 * 109.47380 * 60.00217 * 20 18 17 23 23 C 1.50703 * 109.47407 * 180.02562 * 20 18 17 24 24 H 1.08006 * 119.99409 * 0.02562 * 23 20 18 25 25 C 1.37875 * 120.00392 * 179.97438 * 23 20 18 26 26 N 1.31515 * 120.00345 * 179.97438 * 25 23 20 27 27 Si 1.86806 * 119.99869 * 0.02562 * 25 23 20 28 28 H 1.48499 * 109.46820 * 89.99674 * 27 25 23 29 29 H 1.48496 * 109.46939 * 209.99536 * 27 25 23 30 30 H 1.48492 * 109.47086 * 329.99981 * 27 25 23 31 31 H 1.08994 * 109.47074 * 300.00200 * 1 2 3 32 32 H 1.08995 * 109.46698 * 60.00261 * 1 2 3 33 33 H 1.09004 * 109.46768 * 180.02562 * 1 2 3 34 34 H 1.08999 * 109.46731 * 299.99861 * 3 2 1 35 35 H 1.09004 * 109.47077 * 59.99589 * 3 2 1 36 36 H 1.08996 * 109.47421 * 296.22668 * 4 3 2 37 37 H 1.08993 * 109.47415 * 56.23402 * 4 3 2 38 38 H 1.08997 * 110.90917 * 322.67500 * 9 7 6 39 39 H 1.08999 * 110.90534 * 86.27834 * 9 7 6 40 40 H 1.09002 * 110.49135 * 262.20299 * 10 9 7 41 41 H 1.08999 * 110.48376 * 139.56080 * 10 9 7 42 42 H 1.09006 * 109.47102 * 300.64244 * 13 11 10 43 43 H 1.09000 * 109.46993 * 60.64122 * 13 11 10 44 44 H 1.08992 * 109.47098 * 180.64000 * 13 11 10 45 45 H 1.09004 * 109.46567 * 66.47399 * 19 18 17 46 46 H 1.08996 * 109.47566 * 186.46761 * 19 18 17 47 47 H 1.09001 * 109.47321 * 306.47774 * 19 18 17 48 48 H 1.08999 * 109.46680 * 59.99610 * 22 20 18 49 49 H 1.08994 * 109.47302 * 180.02562 * 22 20 18 50 50 H 1.08996 * 109.46808 * 300.00489 * 22 20 18 51 51 H 0.96993 * 120.00507 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 7 4.1312 2.5200 -0.0901 6 6 4.4612 3.3488 0.9461 7 6 4.2784 3.0601 2.4138 8 1 4.0651 2.0031 2.5723 9 6 3.1513 3.9430 3.0076 10 6 3.5349 3.9939 4.5065 11 6 5.0342 3.6382 4.5251 12 1 5.1891 2.7146 5.0829 13 6 5.8336 4.7738 5.1671 14 8 5.4479 3.4601 3.1601 15 7 4.9624 4.4349 0.4292 16 7 4.9709 4.3494 -0.8532 17 6 4.4765 3.1925 -1.2261 18 7 4.3302 2.7402 -2.5278 19 6 3.3756 3.5738 -3.2706 20 6 5.6274 2.6856 -3.2150 21 1 6.0682 3.6822 -3.2388 22 6 6.5614 1.7325 -2.4667 23 6 5.4287 2.1911 -4.6247 24 1 4.4377 1.9426 -4.9751 25 6 6.5117 2.0568 -5.4673 26 7 6.3383 1.6248 -6.6973 27 14 8.2255 2.4873 -4.8614 28 1 8.8562 1.2830 -4.2638 29 1 9.0488 2.9628 -6.0021 30 1 8.1338 3.5581 -3.8368 31 1 -0.3633 0.5138 0.8899 32 1 -0.3632 0.5138 -0.8900 33 1 -0.3633 -1.0277 0.0005 34 1 1.6887 1.8463 -0.8900 35 1 1.6886 1.8464 0.8900 36 1 3.8614 0.7033 0.9227 37 1 3.8529 0.5864 -0.8534 38 1 3.1662 4.9404 2.5682 39 1 2.1770 3.4738 2.8711 40 1 2.9615 3.2595 5.0723 41 1 3.3753 4.9949 4.9074 42 1 5.6803 5.6919 4.5999 43 1 5.4967 4.9202 6.1934 44 1 6.8931 4.5183 5.1655 45 1 3.7881 4.5749 -3.3957 46 1 3.1921 3.1315 -4.2498 47 1 2.4382 3.6335 -2.7175 48 1 6.1205 0.7360 -2.4429 49 1 7.5240 1.6924 -2.9763 50 1 6.7050 2.0906 -1.4473 51 1 7.1002 1.5300 -7.2900 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000858949857.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:38:04 Heat of formation + Delta-G solvation = 14.048232 kcal Electronic energy + Delta-G solvation = -31416.965084 eV Core-core repulsion = 27354.216232 eV Total energy + Delta-G solvation = -4062.748852 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.78003 -39.73651 -38.23765 -37.28475 -35.09564 -32.98926 -32.63555 -32.18956 -30.42266 -29.93372 -29.24573 -26.66958 -26.26130 -25.40121 -24.51814 -23.64487 -23.08182 -21.74579 -21.24677 -20.37890 -19.55714 -17.50836 -16.92666 -16.71983 -16.46900 -16.26633 -16.08531 -15.83416 -15.50172 -15.18473 -14.96706 -14.58421 -14.06744 -13.77512 -13.74402 -13.42301 -13.31883 -12.81492 -12.68479 -12.61353 -12.49780 -12.23821 -12.12421 -11.90824 -11.81147 -11.71138 -11.61189 -11.25532 -11.17889 -11.09067 -11.00561 -10.77778 -10.73562 -10.33737 -10.18756 -10.00004 -9.96216 -9.94425 -9.60098 -9.26298 -8.68991 -8.61799 -7.97149 -6.14950 -4.15857 1.84167 2.22545 3.06234 3.25389 3.37814 3.41951 3.48643 3.72433 4.08477 4.29984 4.35540 4.41243 4.49012 4.56829 4.63760 4.67986 4.70553 4.87931 4.98163 5.06938 5.11541 5.12747 5.17328 5.19688 5.28652 5.37289 5.41652 5.44184 5.54970 5.55459 5.59347 5.70205 5.78456 5.83602 5.96376 6.02759 6.20124 6.22005 6.28235 6.32156 6.44152 6.62489 6.66321 6.74614 6.78358 6.89126 7.08454 7.40537 7.61609 7.90860 8.48890 8.87261 9.04252 9.45333 10.96824 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.010985 B = 0.003864 C = 0.003107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2548.240211 B = 7244.567571 C = 9010.529402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.384 6.384 3 C 0.054 3.946 4 C 0.113 3.887 5 N -0.462 5.462 6 C 0.158 3.842 7 C 0.175 3.825 8 H 0.085 0.915 9 C -0.141 4.141 10 C -0.150 4.150 11 C 0.071 3.929 12 H 0.070 0.930 13 C -0.151 4.151 14 O -0.350 6.350 15 N -0.259 5.259 16 N -0.317 5.317 17 C 0.385 3.615 18 N -0.462 5.462 19 C 0.051 3.949 20 C 0.196 3.804 21 H 0.022 0.978 22 C -0.146 4.146 23 C -0.513 4.513 24 H 0.087 0.913 25 C 0.079 3.921 26 N -0.893 5.893 27 Si 0.878 3.122 28 H -0.277 1.277 29 H -0.293 1.293 30 H -0.264 1.264 31 H 0.040 0.960 32 H 0.045 0.955 33 H 0.089 0.911 34 H 0.063 0.937 35 H 0.050 0.950 36 H 0.096 0.904 37 H 0.119 0.881 38 H 0.089 0.911 39 H 0.081 0.919 40 H 0.077 0.923 41 H 0.083 0.917 42 H 0.066 0.934 43 H 0.068 0.932 44 H 0.063 0.937 45 H 0.038 0.962 46 H 0.097 0.903 47 H 0.044 0.956 48 H 0.059 0.941 49 H 0.050 0.950 50 H 0.023 0.977 51 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.348 -0.206 22.730 25.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.302 6.302 3 C -0.024 4.024 4 C -0.011 4.011 5 N -0.158 5.158 6 C -0.109 4.109 7 C 0.115 3.885 8 H 0.103 0.897 9 C -0.180 4.180 10 C -0.188 4.188 11 C 0.013 3.987 12 H 0.088 0.912 13 C -0.208 4.208 14 O -0.268 6.268 15 N -0.100 5.100 16 N -0.161 5.161 17 C 0.029 3.971 18 N -0.189 5.189 19 C -0.096 4.096 20 C 0.090 3.910 21 H 0.039 0.961 22 C -0.204 4.204 23 C -0.551 4.551 24 H 0.105 0.895 25 C -0.125 4.125 26 N -0.531 5.531 27 Si 0.708 3.292 28 H -0.204 1.204 29 H -0.221 1.221 30 H -0.189 1.189 31 H 0.059 0.941 32 H 0.064 0.936 33 H 0.108 0.892 34 H 0.081 0.919 35 H 0.068 0.932 36 H 0.115 0.885 37 H 0.138 0.862 38 H 0.108 0.892 39 H 0.100 0.900 40 H 0.096 0.904 41 H 0.102 0.898 42 H 0.085 0.915 43 H 0.087 0.913 44 H 0.082 0.918 45 H 0.057 0.943 46 H 0.115 0.885 47 H 0.063 0.937 48 H 0.078 0.922 49 H 0.068 0.932 50 H 0.042 0.958 51 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -10.509 0.498 22.381 24.731 hybrid contribution 0.383 -0.371 0.298 0.611 sum -10.126 0.127 22.679 24.837 Atomic orbital electron populations 1.22772 0.80257 1.03053 1.00182 1.87822 1.20266 1.26635 1.95503 1.22706 0.92916 0.85547 1.01265 1.21540 0.92057 0.81222 1.06301 1.46128 1.47601 1.15737 1.06321 1.23914 1.05663 0.89982 0.91344 1.20916 0.86391 0.98225 0.83000 0.89741 1.23142 0.97979 1.01774 0.95070 1.23019 0.95880 1.03344 0.96509 1.22767 0.93598 0.98635 0.83682 0.91229 1.21922 1.00722 0.98220 0.99947 1.89047 1.29732 1.89104 1.18894 1.73996 1.15424 1.18926 1.01663 1.74791 1.20396 1.16373 1.04531 1.22897 0.97165 0.88067 0.88955 1.59031 1.14977 1.49841 0.95027 1.22253 0.92589 0.95645 0.99124 1.19849 0.82236 0.95526 0.93399 0.96055 1.22179 0.99589 1.01126 0.97467 1.20837 0.96581 1.45082 0.92602 0.89499 1.24812 0.98670 0.94288 0.94681 1.69847 1.31348 1.45830 1.06036 0.86980 0.84922 0.79298 0.77963 1.20430 1.22084 1.18912 0.94130 0.93621 0.89216 0.91901 0.93153 0.88548 0.86246 0.89227 0.90028 0.90447 0.89827 0.91486 0.91338 0.91814 0.94317 0.88458 0.93688 0.92153 0.93178 0.95836 0.92365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 11.01 101.05 1.11 1.39 16 2 O -0.38 -4.37 10.70 -35.23 -0.38 -4.74 16 3 C 0.05 0.60 6.26 37.15 0.23 0.84 16 4 C 0.11 1.46 6.34 -4.04 -0.03 1.43 16 5 N -0.46 -7.52 2.81 -114.09 -0.32 -7.84 16 6 C 0.16 2.57 7.04 -154.02 -1.08 1.48 16 7 C 0.18 2.12 3.74 -26.83 -0.10 2.02 16 8 H 0.08 0.84 7.04 -51.93 -0.37 0.47 16 9 C -0.14 -1.32 6.57 -24.72 -0.16 -1.48 16 10 C -0.15 -1.09 6.65 -25.20 -0.17 -1.26 16 11 C 0.07 0.65 4.05 -26.16 -0.11 0.55 16 12 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 13 C -0.15 -1.26 9.37 37.16 0.35 -0.91 16 14 O -0.35 -4.75 10.87 -35.23 -0.38 -5.13 16 15 N -0.26 -5.16 12.18 32.99 0.40 -4.76 16 16 N -0.32 -6.91 12.14 30.31 0.37 -6.54 16 17 C 0.38 7.64 5.02 -318.87 -1.60 6.03 16 18 N -0.46 -9.66 4.66 -176.08 -0.82 -10.48 16 19 C 0.05 0.98 9.13 60.07 0.55 1.53 16 20 C 0.20 4.74 1.59 -68.87 -0.11 4.63 16 21 H 0.02 0.58 7.14 -51.93 -0.37 0.20 16 22 C -0.15 -3.38 8.55 37.16 0.32 -3.06 16 23 C -0.51 -13.90 8.54 -34.44 -0.29 -14.19 16 24 H 0.09 2.48 6.64 -52.48 -0.35 2.13 16 25 C 0.08 2.22 5.45 -17.82 -0.10 2.12 16 26 N -0.89 -26.54 13.96 55.43 0.77 -25.77 16 27 Si 0.88 22.13 24.37 -169.99 -4.14 17.99 16 28 H -0.28 -6.81 6.87 56.52 0.39 -6.42 16 29 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 30 H -0.26 -6.68 6.53 56.52 0.37 -6.31 16 31 H 0.04 0.27 8.14 -51.93 -0.42 -0.16 16 32 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.10 1.02 7.17 -51.93 -0.37 0.64 16 37 H 0.12 1.74 8.14 -51.93 -0.42 1.32 16 38 H 0.09 1.00 8.05 -51.93 -0.42 0.58 16 39 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.08 0.54 7.70 -51.93 -0.40 0.14 16 42 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 43 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 44 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 46 H 0.10 1.93 6.33 -51.93 -0.33 1.60 16 47 H 0.04 0.73 8.10 -51.93 -0.42 0.31 16 48 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 49 H 0.05 1.20 3.27 -51.93 -0.17 1.03 16 50 H 0.02 0.52 7.22 -51.93 -0.38 0.14 16 51 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 402.47 15.07 6.07 6.07 Total: -1.00 -33.54 402.47 -8.29 -41.84 By element: Atomic # 1 Polarization: 6.93 SS G_CDS: -8.67 Total: -1.74 kcal Atomic # 6 Polarization: 2.31 SS G_CDS: -1.19 Total: 1.12 kcal Atomic # 7 Polarization: -55.80 SS G_CDS: 0.40 Total: -55.39 kcal Atomic # 8 Polarization: -9.12 SS G_CDS: -0.76 Total: -9.88 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -4.14 Total: 17.99 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -33.54 -8.29 -41.84 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000858949857.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.884 kcal (2) G-P(sol) polarization free energy of solvation -33.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.836 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds