Wall clock time and date at job start Tue Mar 31 2020 21:38:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42901 * 114.00013 * 2 1 4 4 C 1.52993 * 109.46855 * 179.97438 * 3 2 1 5 5 N 1.46508 * 109.46919 * 176.23322 * 4 3 2 6 6 C 1.36733 * 127.13619 * 89.37511 * 5 4 3 7 7 C 1.50694 * 126.34952 * 359.94341 * 6 5 4 8 8 H 1.08998 * 110.55466 * 13.58038 * 7 6 5 9 9 C 1.54994 * 110.62026 * 250.52186 * 7 6 5 10 10 C 1.54810 * 102.09221 * 204.47518 * 9 7 6 11 11 C 1.54100 * 104.19022 * 20.88310 * 10 9 7 12 12 H 1.09002 * 109.87961 * 242.60740 * 11 10 9 13 13 C 1.52999 * 110.00456 * 121.52089 * 11 10 9 14 14 O 1.43744 * 107.28923 * 2.03020 * 11 10 9 15 15 N 1.30304 * 107.30444 * 179.97438 * 6 5 4 16 16 N 1.28530 * 110.05068 * 0.02562 * 15 6 5 17 17 C 1.31216 * 109.86218 * 359.74305 * 16 15 6 18 18 N 1.38579 * 126.47596 * 180.25984 * 17 16 15 19 19 C 1.46902 * 110.99938 * 295.63374 * 18 17 16 20 20 C 1.46893 * 111.00047 * 59.58854 * 18 17 16 21 21 H 1.08999 * 109.47533 * 300.00349 * 20 18 17 22 22 C 1.53001 * 109.47380 * 60.00217 * 20 18 17 23 23 C 1.50703 * 109.47407 * 180.02562 * 20 18 17 24 24 H 1.08006 * 119.99409 * 0.02562 * 23 20 18 25 25 C 1.37875 * 120.00392 * 179.97438 * 23 20 18 26 26 N 1.31515 * 120.00345 * 179.97438 * 25 23 20 27 27 Si 1.86806 * 119.99869 * 0.02562 * 25 23 20 28 28 H 1.48499 * 109.46820 * 89.99674 * 27 25 23 29 29 H 1.48496 * 109.46939 * 209.99536 * 27 25 23 30 30 H 1.48492 * 109.47086 * 329.99981 * 27 25 23 31 31 H 1.08994 * 109.47074 * 300.00200 * 1 2 3 32 32 H 1.08995 * 109.46698 * 60.00261 * 1 2 3 33 33 H 1.09004 * 109.46768 * 180.02562 * 1 2 3 34 34 H 1.08999 * 109.46731 * 299.99861 * 3 2 1 35 35 H 1.09004 * 109.47077 * 59.99589 * 3 2 1 36 36 H 1.08996 * 109.47421 * 296.22668 * 4 3 2 37 37 H 1.08993 * 109.47415 * 56.23402 * 4 3 2 38 38 H 1.08997 * 110.90917 * 322.67500 * 9 7 6 39 39 H 1.08999 * 110.90534 * 86.27834 * 9 7 6 40 40 H 1.09002 * 110.49135 * 262.20299 * 10 9 7 41 41 H 1.08999 * 110.48376 * 139.56080 * 10 9 7 42 42 H 1.09006 * 109.47102 * 300.64244 * 13 11 10 43 43 H 1.09000 * 109.46993 * 60.64122 * 13 11 10 44 44 H 1.08992 * 109.47098 * 180.64000 * 13 11 10 45 45 H 1.09004 * 109.46567 * 66.47399 * 19 18 17 46 46 H 1.08996 * 109.47566 * 186.46761 * 19 18 17 47 47 H 1.09001 * 109.47321 * 306.47774 * 19 18 17 48 48 H 1.08999 * 109.46680 * 59.99610 * 22 20 18 49 49 H 1.08994 * 109.47302 * 180.02562 * 22 20 18 50 50 H 1.08996 * 109.46808 * 300.00489 * 22 20 18 51 51 H 0.96993 * 120.00507 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 7 4.1312 2.5200 -0.0901 6 6 4.4612 3.3488 0.9461 7 6 4.2784 3.0601 2.4138 8 1 4.0651 2.0031 2.5723 9 6 3.1513 3.9430 3.0076 10 6 3.5349 3.9939 4.5065 11 6 5.0342 3.6382 4.5251 12 1 5.1891 2.7146 5.0829 13 6 5.8336 4.7738 5.1671 14 8 5.4479 3.4601 3.1601 15 7 4.9624 4.4349 0.4292 16 7 4.9709 4.3494 -0.8532 17 6 4.4765 3.1925 -1.2261 18 7 4.3302 2.7402 -2.5278 19 6 3.3756 3.5738 -3.2706 20 6 5.6274 2.6856 -3.2150 21 1 6.0682 3.6822 -3.2388 22 6 6.5614 1.7325 -2.4667 23 6 5.4287 2.1911 -4.6247 24 1 4.4377 1.9426 -4.9751 25 6 6.5117 2.0568 -5.4673 26 7 6.3383 1.6248 -6.6973 27 14 8.2255 2.4873 -4.8614 28 1 8.8562 1.2830 -4.2638 29 1 9.0488 2.9628 -6.0021 30 1 8.1338 3.5581 -3.8368 31 1 -0.3633 0.5138 0.8899 32 1 -0.3632 0.5138 -0.8900 33 1 -0.3633 -1.0277 0.0005 34 1 1.6887 1.8463 -0.8900 35 1 1.6886 1.8464 0.8900 36 1 3.8614 0.7033 0.9227 37 1 3.8529 0.5864 -0.8534 38 1 3.1662 4.9404 2.5682 39 1 2.1770 3.4738 2.8711 40 1 2.9615 3.2595 5.0723 41 1 3.3753 4.9949 4.9074 42 1 5.6803 5.6919 4.5999 43 1 5.4967 4.9202 6.1934 44 1 6.8931 4.5183 5.1655 45 1 3.7881 4.5749 -3.3957 46 1 3.1921 3.1315 -4.2498 47 1 2.4382 3.6335 -2.7175 48 1 6.1205 0.7360 -2.4429 49 1 7.5240 1.6924 -2.9763 50 1 6.7050 2.0906 -1.4473 51 1 7.1002 1.5300 -7.2900 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000858949857.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:38:03 Heat of formation + Delta-G solvation = -8.968307 kcal Electronic energy + Delta-G solvation = -31417.963156 eV Core-core repulsion = 27354.216232 eV Total energy + Delta-G solvation = -4063.746924 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -44.17889 -40.55631 -39.07279 -39.00090 -36.31065 -34.94084 -33.44493 -33.19112 -32.29097 -30.95806 -30.49868 -27.80156 -27.23768 -26.89804 -26.24234 -24.67342 -24.04045 -23.32604 -21.95124 -21.53204 -21.15336 -19.03957 -18.48582 -17.75009 -17.59256 -17.31899 -17.12449 -16.83746 -16.72710 -16.54137 -16.24890 -15.81733 -15.55166 -15.18246 -14.79822 -14.56570 -14.49636 -14.20798 -14.15319 -13.72637 -13.53891 -13.42054 -13.25869 -13.08058 -12.84292 -12.79422 -12.68021 -12.62915 -12.55953 -12.44837 -12.28074 -12.21338 -11.89058 -11.67728 -11.60162 -11.58423 -11.32861 -11.24223 -10.81834 -10.78128 -10.73910 -10.10813 -9.70934 -8.35290 -6.38786 0.50732 0.98388 1.22669 1.31789 1.39713 1.63663 2.24698 2.54684 2.69125 2.97672 3.03895 3.22371 3.47001 3.61906 3.73974 3.81206 3.87864 3.97048 4.01797 4.09698 4.22628 4.28107 4.30309 4.36264 4.38772 4.47750 4.49061 4.49888 4.54238 4.57960 4.62340 4.65598 4.70417 4.80979 4.86075 4.87384 4.89856 4.94976 5.01829 5.02251 5.11264 5.16897 5.20105 5.33002 5.40513 5.51344 5.75627 5.92941 6.04360 6.11735 6.49423 6.65918 7.25217 7.61267 8.79619 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.010985 B = 0.003864 C = 0.003107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2548.240211 B = 7244.567571 C = 9010.529402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.402 6.402 3 C 0.062 3.938 4 C 0.107 3.893 5 N -0.453 5.453 6 C 0.183 3.817 7 C 0.169 3.831 8 H 0.116 0.884 9 C -0.137 4.137 10 C -0.139 4.139 11 C 0.061 3.939 12 H 0.089 0.911 13 C -0.151 4.151 14 O -0.387 6.387 15 N -0.301 5.301 16 N -0.354 5.354 17 C 0.368 3.632 18 N -0.457 5.457 19 C 0.056 3.944 20 C 0.203 3.797 21 H -0.005 1.005 22 C -0.136 4.136 23 C -0.507 4.507 24 H 0.065 0.935 25 C 0.034 3.966 26 N -0.932 5.932 27 Si 0.928 3.072 28 H -0.262 1.262 29 H -0.290 1.290 30 H -0.270 1.270 31 H 0.060 0.940 32 H 0.042 0.958 33 H 0.103 0.897 34 H 0.045 0.955 35 H 0.076 0.924 36 H 0.128 0.872 37 H 0.101 0.899 38 H 0.064 0.936 39 H 0.109 0.891 40 H 0.108 0.892 41 H 0.090 0.910 42 H 0.049 0.951 43 H 0.096 0.904 44 H 0.051 0.949 45 H 0.024 0.976 46 H 0.085 0.915 47 H 0.074 0.926 48 H 0.069 0.931 49 H 0.042 0.958 50 H 0.027 0.973 51 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.624 -1.353 26.336 29.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.320 6.320 3 C -0.015 4.015 4 C -0.015 4.015 5 N -0.148 5.148 6 C -0.086 4.086 7 C 0.109 3.891 8 H 0.134 0.866 9 C -0.176 4.176 10 C -0.176 4.176 11 C 0.004 3.996 12 H 0.107 0.893 13 C -0.208 4.208 14 O -0.306 6.306 15 N -0.141 5.141 16 N -0.197 5.197 17 C 0.011 3.989 18 N -0.184 5.184 19 C -0.091 4.091 20 C 0.096 3.904 21 H 0.013 0.987 22 C -0.193 4.193 23 C -0.545 4.545 24 H 0.083 0.917 25 C -0.166 4.166 26 N -0.571 5.571 27 Si 0.756 3.244 28 H -0.188 1.188 29 H -0.217 1.217 30 H -0.195 1.195 31 H 0.079 0.921 32 H 0.061 0.939 33 H 0.121 0.879 34 H 0.063 0.937 35 H 0.094 0.906 36 H 0.146 0.854 37 H 0.119 0.881 38 H 0.083 0.917 39 H 0.127 0.873 40 H 0.126 0.874 41 H 0.109 0.891 42 H 0.068 0.932 43 H 0.115 0.885 44 H 0.071 0.929 45 H 0.043 0.957 46 H 0.103 0.897 47 H 0.093 0.907 48 H 0.088 0.912 49 H 0.061 0.939 50 H 0.046 0.954 51 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -11.806 -0.660 26.012 28.574 hybrid contribution 0.670 -0.012 -0.719 0.983 sum -11.136 -0.673 25.293 27.644 Atomic orbital electron populations 1.22989 0.78562 1.04313 1.01048 1.87794 1.22096 1.26476 1.95642 1.22560 0.91487 0.85815 1.01673 1.21803 0.93420 0.79252 1.07063 1.46209 1.47002 1.16503 1.05077 1.24823 1.02227 0.88468 0.93067 1.21372 0.87145 1.00451 0.80151 0.86612 1.23147 0.98248 1.00079 0.96113 1.23025 0.94569 1.04849 0.95198 1.23081 0.94981 0.99688 0.81815 0.89284 1.21959 1.00227 0.97330 1.01301 1.89015 1.30979 1.89492 1.21111 1.73926 1.17962 1.21197 1.01009 1.74673 1.21428 1.17745 1.05864 1.22649 0.98759 0.88536 0.88989 1.58918 1.13350 1.50343 0.95743 1.22218 0.93502 0.94434 0.98995 1.19546 0.84157 0.94114 0.92556 0.98728 1.22026 0.98806 1.01171 0.97310 1.20981 0.95557 1.43905 0.94085 0.91730 1.25428 1.01884 0.94479 0.94769 1.69944 1.32450 1.47560 1.07161 0.86170 0.81424 0.79358 0.77426 1.18836 1.21687 1.19507 0.92094 0.93910 0.87866 0.93658 0.90576 0.85418 0.88111 0.91701 0.87277 0.87354 0.89087 0.93188 0.88520 0.92950 0.95706 0.89676 0.90690 0.91234 0.93928 0.95357 0.92114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 11.01 113.37 1.25 1.61 16 2 O -0.40 -8.06 10.70 -148.98 -1.59 -9.65 16 3 C 0.06 1.24 6.26 71.98 0.45 1.69 16 4 C 0.11 2.53 6.34 86.38 0.55 3.07 16 5 N -0.45 -14.15 2.81 -514.86 -1.45 -15.59 16 6 C 0.18 5.69 7.04 137.64 0.97 6.66 16 7 C 0.17 3.60 3.74 30.53 0.11 3.71 16 8 H 0.12 1.74 7.04 -2.39 -0.02 1.73 16 9 C -0.14 -2.11 6.57 31.89 0.21 -1.90 16 10 C -0.14 -1.45 6.65 31.58 0.21 -1.24 16 11 C 0.06 0.94 4.05 30.97 0.13 1.07 16 12 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 13 C -0.15 -2.24 9.37 71.98 0.67 -1.57 16 14 O -0.39 -9.77 10.87 -148.98 -1.62 -11.39 16 15 N -0.30 -12.05 12.18 -49.54 -0.60 -12.65 16 16 N -0.35 -15.69 12.14 -58.00 -0.70 -16.39 16 17 C 0.37 14.63 5.02 260.11 1.31 15.94 16 18 N -0.46 -19.43 4.66 -711.00 -3.31 -22.74 16 19 C 0.06 2.19 9.13 127.69 1.17 3.35 16 20 C 0.20 10.04 1.59 44.17 0.07 10.11 16 21 H 0.00 -0.27 7.14 -2.39 -0.02 -0.29 16 22 C -0.14 -6.25 8.55 71.98 0.62 -5.63 16 23 C -0.51 -28.19 8.54 25.60 0.22 -27.97 16 24 H 0.06 3.82 6.64 -2.91 -0.02 3.80 16 25 C 0.03 1.95 5.45 84.65 0.46 2.41 16 26 N -0.93 -56.45 13.96 21.45 0.30 -56.15 16 27 Si 0.93 46.10 24.37 68.60 1.67 47.77 16 28 H -0.26 -12.33 6.87 99.48 0.68 -11.65 16 29 H -0.29 -14.12 7.11 99.48 0.71 -13.41 16 30 H -0.27 -13.57 6.53 99.48 0.65 -12.92 16 31 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 32 H 0.04 0.59 8.14 -2.39 -0.02 0.57 16 33 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 35 H 0.08 1.12 8.14 -2.38 -0.02 1.10 16 36 H 0.13 2.21 7.17 -2.39 -0.02 2.20 16 37 H 0.10 2.82 8.14 -2.39 -0.02 2.80 16 38 H 0.06 1.34 8.05 -2.39 -0.02 1.32 16 39 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 40 H 0.11 0.52 8.14 -2.39 -0.02 0.50 16 41 H 0.09 0.84 7.70 -2.39 -0.02 0.83 16 42 H 0.05 0.90 8.14 -2.38 -0.02 0.88 16 43 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 44 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 45 H 0.02 1.02 8.14 -2.38 -0.02 1.00 16 46 H 0.08 3.52 6.33 -2.39 -0.02 3.50 16 47 H 0.07 2.45 8.10 -2.39 -0.02 2.43 16 48 H 0.07 3.03 8.14 -2.39 -0.02 3.01 16 49 H 0.04 2.01 3.27 -2.39 -0.01 2.00 16 50 H 0.03 1.24 7.22 -2.39 -0.02 1.23 16 51 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 Total: -1.00 -75.75 402.47 1.91 -73.85 By element: Atomic # 1 Polarization: 10.81 SS G_CDS: 0.83 Total: 11.64 kcal Atomic # 6 Polarization: 2.93 SS G_CDS: 8.39 Total: 11.32 kcal Atomic # 7 Polarization: -117.76 SS G_CDS: -5.77 Total: -123.53 kcal Atomic # 8 Polarization: -17.83 SS G_CDS: -3.21 Total: -21.04 kcal Atomic # 14 Polarization: 46.10 SS G_CDS: 1.67 Total: 47.77 kcal Total: -75.75 1.91 -73.85 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000858949857.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.877 kcal (2) G-P(sol) polarization free energy of solvation -75.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds