Wall clock time and date at job start Tue Mar 31 2020 21:55:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 109.50642 * 2 1 4 4 C 1.53041 * 109.50463 * 120.07991 * 2 1 3 5 5 N 1.46849 * 109.51757 * 179.16425 * 4 2 1 6 6 C 1.46847 * 111.19389 * 298.24261 * 5 4 2 7 7 C 1.53032 * 109.51722 * 61.75713 * 6 5 4 8 8 C 1.53116 * 109.27739 * 300.81303 * 7 6 5 9 9 H 1.08999 * 109.52685 * 297.74910 * 8 7 6 10 10 N 1.46502 * 109.52279 * 177.56179 * 8 7 6 11 11 C 1.34771 * 119.99998 * 85.31458 * 10 8 7 12 12 O 1.21345 * 120.00742 * 0.02562 * 11 10 8 13 13 C 1.49454 * 119.99799 * 180.02562 * 11 10 8 14 14 O 1.21349 * 120.00154 * 353.35205 * 13 11 10 15 15 N 1.34782 * 119.99943 * 173.36372 * 13 11 10 16 16 C 1.47082 * 120.87700 * 181.22178 * 15 13 11 17 17 C 1.53700 * 108.27479 * 128.75011 * 16 15 13 18 18 N 1.46896 * 109.25652 * 54.08278 * 17 16 15 19 19 C 1.46902 * 111.00415 * 172.60772 * 18 17 16 20 20 C 1.50709 * 109.46754 * 59.76106 * 19 18 17 21 21 H 1.07997 * 119.99979 * 355.27224 * 20 19 18 22 22 C 1.37876 * 119.99341 * 175.26439 * 20 19 18 23 23 N 1.31513 * 120.00569 * 0.02562 * 22 20 19 24 24 Si 1.86806 * 119.99468 * 180.02562 * 22 20 19 25 25 H 1.48494 * 109.47057 * 0.02562 * 24 22 20 26 26 H 1.48505 * 109.47006 * 120.00431 * 24 22 20 27 27 H 1.48500 * 109.46909 * 239.99889 * 24 22 20 28 28 C 1.46903 * 111.26647 * 296.75146 * 18 17 16 29 29 C 1.47078 * 120.88102 * 1.49118 * 15 13 11 30 30 H 1.09005 * 109.46980 * 299.91784 * 1 2 3 31 31 H 1.08999 * 109.47003 * 59.92411 * 1 2 3 32 32 H 1.09001 * 109.46951 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.46191 * 299.17386 * 4 2 1 34 34 H 1.09001 * 109.46493 * 59.15066 * 4 2 1 35 35 H 1.00898 * 110.99955 * 62.34289 * 5 4 2 36 36 H 1.08995 * 109.46992 * 301.73805 * 6 5 4 37 37 H 1.09006 * 109.44841 * 181.76580 * 6 5 4 38 38 H 1.09000 * 109.50206 * 180.87333 * 7 6 5 39 39 H 1.08998 * 109.50176 * 60.75512 * 7 6 5 40 40 H 0.96998 * 119.99921 * 265.31991 * 10 8 7 41 41 H 1.08998 * 109.62545 * 248.51650 * 16 15 13 42 42 H 1.08993 * 109.62956 * 9.09777 * 16 15 13 43 43 H 1.08994 * 109.64580 * 294.07367 * 17 16 15 44 44 H 1.09005 * 109.41659 * 173.94059 * 17 16 15 45 45 H 1.08993 * 109.47317 * 179.76293 * 19 18 17 46 46 H 1.09000 * 109.46835 * 299.76675 * 19 18 17 47 47 H 0.97000 * 120.00156 * 179.97438 * 23 22 20 48 48 H 1.08998 * 109.49564 * 303.14607 * 28 18 17 49 49 H 1.09001 * 109.51730 * 183.07516 * 28 18 17 50 50 H 1.08997 * 109.62712 * 350.90081 * 29 15 13 51 51 H 1.09003 * 109.62524 * 111.48419 * 29 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0274 0.0000 4 6 2.0410 -0.7230 1.2483 5 7 3.5093 -0.7407 1.2385 6 6 4.0237 -1.4716 0.0734 7 6 3.5720 -0.7710 -1.2099 8 6 2.0420 -0.7238 -1.2484 9 1 1.6465 -1.7393 -1.2687 10 7 1.6044 -0.0027 -2.4463 11 6 1.4782 -0.6567 -3.6179 12 8 1.7266 -1.8428 -3.6807 13 6 1.0324 0.0790 -4.8401 14 8 0.6686 1.2335 -4.7544 15 7 1.0341 -0.5399 -6.0374 16 6 0.6247 0.1738 -7.2566 17 6 1.7203 -0.0167 -8.3175 18 7 1.9780 -1.4519 -8.4955 19 6 2.8908 -1.6873 -9.6222 20 6 4.1989 -0.9849 -9.3641 21 1 4.3124 -0.3582 -8.4919 22 6 5.2508 -1.1427 -10.2414 23 7 5.1125 -1.9056 -11.3036 24 14 6.8726 -0.2726 -9.9210 25 1 6.7708 0.5187 -8.6687 26 1 7.9556 -1.2793 -9.7833 27 1 7.1807 0.6337 -11.0563 28 6 2.4978 -2.0570 -7.2619 29 6 1.4399 -1.9484 -6.1585 30 1 -0.3633 0.5126 0.8908 31 1 -0.3633 0.5150 -0.8893 32 1 -0.3633 -1.0277 -0.0005 33 1 1.6900 -0.2019 2.1390 34 1 1.6655 -1.7463 1.2546 35 1 3.8824 0.1962 1.2713 36 1 3.6388 -2.4913 0.0853 37 1 5.1129 -1.4941 0.1109 38 1 3.9409 -1.3224 -2.0748 39 1 3.9680 0.2443 -1.2290 40 1 1.4056 0.9453 -2.3961 41 1 -0.3175 -0.2353 -7.6212 42 1 0.5060 1.2348 -7.0373 43 1 2.6349 0.4796 -7.9931 44 1 1.3883 0.4131 -9.2626 45 1 3.0678 -2.7574 -9.7290 46 1 2.4448 -1.2995 -10.5381 47 1 5.8524 -2.0162 -11.9210 48 1 3.4016 -1.5323 -6.9521 49 1 2.7300 -3.1068 -7.4409 50 1 1.8604 -2.2908 -5.2131 51 1 0.5745 -2.5575 -6.4197 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000884716491.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:55:55 Heat of formation + Delta-G solvation = -47.772838 kcal Electronic energy + Delta-G solvation = -30743.607195 eV Core-core repulsion = 26678.177580 eV Total energy + Delta-G solvation = -4065.429615 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.10224 -39.76099 -38.37026 -37.59408 -35.28241 -34.27241 -33.04979 -32.32276 -30.82127 -30.66266 -28.39377 -26.99093 -25.84921 -24.77281 -23.49893 -22.87237 -22.27317 -21.87053 -21.00269 -20.48563 -19.28133 -17.66435 -17.17264 -16.55387 -16.23855 -16.06425 -15.92551 -15.39523 -15.02752 -14.83208 -14.61228 -14.40860 -14.26906 -14.17528 -13.91283 -13.71569 -13.47055 -13.41094 -12.95401 -12.73530 -12.47257 -12.34102 -12.22777 -12.12169 -11.87088 -11.49579 -11.44538 -11.28037 -11.16651 -11.04742 -10.90979 -10.83957 -10.70400 -10.60267 -10.29414 -9.94915 -9.69608 -9.48393 -9.07129 -8.78403 -8.56047 -8.47974 -7.26935 -6.08038 -4.17471 1.39321 2.26677 3.19063 3.22689 3.31099 3.34508 3.45188 3.87184 4.08457 4.26136 4.34042 4.36285 4.43790 4.68701 4.85100 4.93222 4.97660 5.03621 5.08662 5.22334 5.24640 5.37841 5.39810 5.46997 5.47382 5.52113 5.59842 5.64870 5.67254 5.72516 5.79333 5.80602 5.91412 5.94487 6.01819 6.35535 6.49128 6.54462 6.57346 6.60669 6.72298 6.90915 6.93138 7.19571 7.38684 7.46587 7.70754 7.83969 7.94906 7.99729 8.17920 8.23079 8.92561 9.49950 10.97092 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.014147 B = 0.002791 C = 0.002499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1978.811731 B =10028.163503 C =11200.245486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.137 4.137 3 H 0.077 0.923 4 C 0.066 3.934 5 N -0.687 5.687 6 C 0.060 3.940 7 C -0.171 4.171 8 C 0.149 3.851 9 H 0.095 0.905 10 N -0.696 5.696 11 C 0.514 3.486 12 O -0.505 6.505 13 C 0.501 3.499 14 O -0.538 6.538 15 N -0.566 5.566 16 C 0.110 3.890 17 C 0.051 3.949 18 N -0.542 5.542 19 C 0.187 3.813 20 C -0.551 4.551 21 H 0.056 0.944 22 C 0.066 3.934 23 N -0.889 5.889 24 Si 0.888 3.112 25 H -0.275 1.275 26 H -0.283 1.283 27 H -0.283 1.283 28 C 0.052 3.948 29 C 0.056 3.944 30 H 0.060 0.940 31 H 0.059 0.941 32 H 0.058 0.942 33 H 0.081 0.919 34 H 0.077 0.923 35 H 0.342 0.658 36 H 0.078 0.922 37 H 0.081 0.919 38 H 0.079 0.921 39 H 0.066 0.934 40 H 0.411 0.589 41 H 0.075 0.925 42 H 0.089 0.911 43 H 0.043 0.957 44 H 0.080 0.920 45 H 0.036 0.964 46 H 0.030 0.970 47 H 0.262 0.738 48 H 0.040 0.960 49 H 0.079 0.921 50 H 0.147 0.853 51 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.143 3.044 23.927 25.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.158 4.158 3 H 0.095 0.905 4 C -0.065 4.065 5 N -0.314 5.314 6 C -0.070 4.070 7 C -0.212 4.212 8 C 0.045 3.955 9 H 0.113 0.887 10 N -0.349 5.349 11 C 0.296 3.704 12 O -0.382 6.382 13 C 0.283 3.717 14 O -0.417 6.417 15 N -0.298 5.298 16 C -0.012 4.012 17 C -0.078 4.078 18 N -0.267 5.267 19 C 0.061 3.939 20 C -0.590 4.590 21 H 0.074 0.926 22 C -0.137 4.137 23 N -0.528 5.528 24 Si 0.716 3.284 25 H -0.200 1.200 26 H -0.209 1.209 27 H -0.209 1.209 28 C -0.077 4.077 29 C -0.065 4.065 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.099 0.901 34 H 0.096 0.904 35 H 0.159 0.841 36 H 0.096 0.904 37 H 0.099 0.901 38 H 0.098 0.902 39 H 0.085 0.915 40 H 0.247 0.753 41 H 0.094 0.906 42 H 0.107 0.893 43 H 0.062 0.938 44 H 0.099 0.901 45 H 0.054 0.946 46 H 0.048 0.952 47 H 0.072 0.928 48 H 0.058 0.942 49 H 0.097 0.903 50 H 0.164 0.836 51 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -8.456 1.934 24.069 25.585 hybrid contribution 1.554 1.978 -0.842 2.653 sum -6.902 3.912 23.228 24.545 Atomic orbital electron populations 1.21776 0.93908 1.02481 1.02273 1.22214 0.97436 1.00448 0.95656 0.90498 1.22100 0.87571 1.01084 0.95711 1.60634 1.07236 1.21710 1.41829 1.22020 1.00440 0.98085 0.86490 1.22727 0.95378 1.02188 1.00891 1.21152 0.94203 0.97207 0.82939 0.88733 1.45872 1.66962 1.14042 1.07977 1.20356 0.77943 0.87234 0.84833 1.90378 1.49515 1.15312 1.82989 1.19892 0.80462 0.86676 0.84646 1.90720 1.48516 1.16750 1.85688 1.48147 1.61681 1.13915 1.06033 1.22139 0.98493 0.97446 0.83148 1.22319 0.96579 0.91436 0.97508 1.62528 1.47502 1.11123 1.05518 1.19775 0.88669 0.97482 0.87925 1.21772 0.98363 1.29774 1.09085 0.92606 1.24954 0.98705 0.95048 0.94991 1.69946 1.32138 1.38016 1.12686 0.86600 0.83974 0.79603 0.78217 1.19953 1.20861 1.20863 1.22241 0.95131 1.00464 0.89889 1.23457 0.99379 0.79370 1.04272 0.92106 0.92223 0.92257 0.90053 0.90416 0.84070 0.90392 0.90089 0.90210 0.91511 0.75280 0.90635 0.89313 0.93845 0.90130 0.94601 0.95223 0.92796 0.94208 0.90266 0.83627 0.91241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 9.06 37.16 0.34 -0.55 16 2 C -0.14 -0.83 2.43 -90.54 -0.22 -1.05 16 3 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 4 C 0.07 0.37 5.84 -3.83 -0.02 0.35 16 5 N -0.69 -4.40 6.87 -113.81 -0.78 -5.18 16 6 C 0.06 0.42 6.55 -3.84 -0.03 0.40 16 7 C -0.17 -1.42 5.66 -26.65 -0.15 -1.57 16 8 C 0.15 1.25 1.94 -67.81 -0.13 1.11 16 9 H 0.09 0.92 7.58 -51.93 -0.39 0.53 16 10 N -0.70 -7.08 4.44 -54.12 -0.24 -7.32 16 11 C 0.51 6.91 7.78 -11.59 -0.09 6.82 16 12 O -0.51 -7.45 12.70 5.50 0.07 -7.38 16 13 C 0.50 7.81 7.77 -11.58 -0.09 7.72 16 14 O -0.54 -9.02 15.95 5.50 0.09 -8.93 16 15 N -0.57 -9.23 3.00 -172.68 -0.52 -9.75 16 16 C 0.11 1.78 6.62 -3.36 -0.02 1.76 16 17 C 0.05 0.98 5.18 -3.46 -0.02 0.96 16 18 N -0.54 -11.43 4.83 -235.46 -1.14 -12.56 16 19 C 0.19 4.73 5.11 -4.97 -0.03 4.70 16 20 C -0.55 -15.01 7.76 -34.44 -0.27 -15.27 16 21 H 0.06 1.53 5.88 -52.49 -0.31 1.23 16 22 C 0.07 1.84 5.46 -17.82 -0.10 1.74 16 23 N -0.89 -25.93 13.29 55.43 0.74 -25.19 16 24 Si 0.89 21.42 29.54 -169.99 -5.02 16.39 16 25 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 26 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 27 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 28 C 0.05 1.01 5.24 -3.70 -0.02 0.99 16 29 C 0.06 0.92 6.35 -3.60 -0.02 0.89 16 30 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.06 0.42 7.63 -51.93 -0.40 0.02 16 32 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 33 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 34 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.34 1.87 8.86 -39.29 -0.35 1.52 16 36 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.41 3.84 8.03 -40.82 -0.33 3.52 16 41 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 42 H 0.09 1.39 7.07 -51.93 -0.37 1.02 16 43 H 0.04 0.93 6.63 -51.93 -0.34 0.59 16 44 H 0.08 1.51 8.11 -51.93 -0.42 1.09 16 45 H 0.04 0.97 8.07 -51.93 -0.42 0.56 16 46 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 47 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 48 H 0.04 0.86 7.09 -51.93 -0.37 0.49 16 49 H 0.08 1.53 8.06 -51.93 -0.42 1.11 16 50 H 0.15 2.34 3.92 -56.52 -0.22 2.12 16 51 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 LS Contribution 393.62 15.07 5.93 5.93 Total: -1.00 -30.51 393.62 -10.28 -40.79 By element: Atomic # 1 Polarization: 12.74 SS G_CDS: -8.54 Total: 4.20 kcal Atomic # 6 Polarization: 9.87 SS G_CDS: -0.87 Total: 9.00 kcal Atomic # 7 Polarization: -58.06 SS G_CDS: -1.94 Total: -60.01 kcal Atomic # 8 Polarization: -16.47 SS G_CDS: 0.16 Total: -16.31 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -30.51 -10.28 -40.79 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884716491.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.983 kcal (2) G-P(sol) polarization free energy of solvation -30.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds