Wall clock time and date at job start Tue Mar 31 2020 21:55:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 109.50642 * 2 1 4 4 C 1.53041 * 109.50463 * 120.07991 * 2 1 3 5 5 N 1.46849 * 109.51757 * 179.16425 * 4 2 1 6 6 C 1.46847 * 111.19389 * 298.24261 * 5 4 2 7 7 C 1.53032 * 109.51722 * 61.75713 * 6 5 4 8 8 C 1.53116 * 109.27739 * 300.81303 * 7 6 5 9 9 H 1.08999 * 109.52685 * 297.74910 * 8 7 6 10 10 N 1.46502 * 109.52279 * 177.56179 * 8 7 6 11 11 C 1.34771 * 119.99998 * 85.31458 * 10 8 7 12 12 O 1.21345 * 120.00742 * 0.02562 * 11 10 8 13 13 C 1.49454 * 119.99799 * 180.02562 * 11 10 8 14 14 O 1.21349 * 120.00154 * 353.35205 * 13 11 10 15 15 N 1.34782 * 119.99943 * 173.36372 * 13 11 10 16 16 C 1.47082 * 120.87700 * 181.22178 * 15 13 11 17 17 C 1.53700 * 108.27479 * 128.75011 * 16 15 13 18 18 N 1.46896 * 109.25652 * 54.08278 * 17 16 15 19 19 C 1.46902 * 111.00415 * 172.60772 * 18 17 16 20 20 C 1.50709 * 109.46754 * 59.76106 * 19 18 17 21 21 H 1.07997 * 119.99979 * 355.27224 * 20 19 18 22 22 C 1.37876 * 119.99341 * 175.26439 * 20 19 18 23 23 N 1.31513 * 120.00569 * 0.02562 * 22 20 19 24 24 Si 1.86806 * 119.99468 * 180.02562 * 22 20 19 25 25 H 1.48494 * 109.47057 * 0.02562 * 24 22 20 26 26 H 1.48505 * 109.47006 * 120.00431 * 24 22 20 27 27 H 1.48500 * 109.46909 * 239.99889 * 24 22 20 28 28 C 1.46903 * 111.26647 * 296.75146 * 18 17 16 29 29 C 1.47078 * 120.88102 * 1.49118 * 15 13 11 30 30 H 1.09005 * 109.46980 * 299.91784 * 1 2 3 31 31 H 1.08999 * 109.47003 * 59.92411 * 1 2 3 32 32 H 1.09001 * 109.46951 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.46191 * 299.17386 * 4 2 1 34 34 H 1.09001 * 109.46493 * 59.15066 * 4 2 1 35 35 H 1.00898 * 110.99955 * 62.34289 * 5 4 2 36 36 H 1.08995 * 109.46992 * 301.73805 * 6 5 4 37 37 H 1.09006 * 109.44841 * 181.76580 * 6 5 4 38 38 H 1.09000 * 109.50206 * 180.87333 * 7 6 5 39 39 H 1.08998 * 109.50176 * 60.75512 * 7 6 5 40 40 H 0.96998 * 119.99921 * 265.31991 * 10 8 7 41 41 H 1.08998 * 109.62545 * 248.51650 * 16 15 13 42 42 H 1.08993 * 109.62956 * 9.09777 * 16 15 13 43 43 H 1.08994 * 109.64580 * 294.07367 * 17 16 15 44 44 H 1.09005 * 109.41659 * 173.94059 * 17 16 15 45 45 H 1.08993 * 109.47317 * 179.76293 * 19 18 17 46 46 H 1.09000 * 109.46835 * 299.76675 * 19 18 17 47 47 H 0.97000 * 120.00156 * 179.97438 * 23 22 20 48 48 H 1.08998 * 109.49564 * 303.14607 * 28 18 17 49 49 H 1.09001 * 109.51730 * 183.07516 * 28 18 17 50 50 H 1.08997 * 109.62712 * 350.90081 * 29 15 13 51 51 H 1.09003 * 109.62524 * 111.48419 * 29 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0274 0.0000 4 6 2.0410 -0.7230 1.2483 5 7 3.5093 -0.7407 1.2385 6 6 4.0237 -1.4716 0.0734 7 6 3.5720 -0.7710 -1.2099 8 6 2.0420 -0.7238 -1.2484 9 1 1.6465 -1.7393 -1.2687 10 7 1.6044 -0.0027 -2.4463 11 6 1.4782 -0.6567 -3.6179 12 8 1.7266 -1.8428 -3.6807 13 6 1.0324 0.0790 -4.8401 14 8 0.6686 1.2335 -4.7544 15 7 1.0341 -0.5399 -6.0374 16 6 0.6247 0.1738 -7.2566 17 6 1.7203 -0.0167 -8.3175 18 7 1.9780 -1.4519 -8.4955 19 6 2.8908 -1.6873 -9.6222 20 6 4.1989 -0.9849 -9.3641 21 1 4.3124 -0.3582 -8.4919 22 6 5.2508 -1.1427 -10.2414 23 7 5.1125 -1.9056 -11.3036 24 14 6.8726 -0.2726 -9.9210 25 1 6.7708 0.5187 -8.6687 26 1 7.9556 -1.2793 -9.7833 27 1 7.1807 0.6337 -11.0563 28 6 2.4978 -2.0570 -7.2619 29 6 1.4399 -1.9484 -6.1585 30 1 -0.3633 0.5126 0.8908 31 1 -0.3633 0.5150 -0.8893 32 1 -0.3633 -1.0277 -0.0005 33 1 1.6900 -0.2019 2.1390 34 1 1.6655 -1.7463 1.2546 35 1 3.8824 0.1962 1.2713 36 1 3.6388 -2.4913 0.0853 37 1 5.1129 -1.4941 0.1109 38 1 3.9409 -1.3224 -2.0748 39 1 3.9680 0.2443 -1.2290 40 1 1.4056 0.9453 -2.3961 41 1 -0.3175 -0.2353 -7.6212 42 1 0.5060 1.2348 -7.0373 43 1 2.6349 0.4796 -7.9931 44 1 1.3883 0.4131 -9.2626 45 1 3.0678 -2.7574 -9.7290 46 1 2.4448 -1.2995 -10.5381 47 1 5.8524 -2.0162 -11.9210 48 1 3.4016 -1.5323 -6.9521 49 1 2.7300 -3.1068 -7.4409 50 1 1.8604 -2.2908 -5.2131 51 1 0.5745 -2.5575 -6.4197 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000884716491.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:55:54 Heat of formation + Delta-G solvation = -71.565710 kcal Electronic energy + Delta-G solvation = -30744.638931 eV Core-core repulsion = 26678.177580 eV Total energy + Delta-G solvation = -4066.461351 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.20120 -40.68771 -39.44103 -39.03430 -36.45460 -35.55770 -34.32827 -33.63355 -32.14606 -31.52339 -30.10380 -27.81529 -27.29445 -26.02636 -24.72420 -24.29186 -23.31568 -22.85702 -21.90427 -21.58988 -20.58097 -18.95561 -18.41973 -18.17673 -17.38485 -17.16029 -16.87801 -16.71958 -16.17491 -16.05264 -15.84858 -15.70965 -15.54387 -15.19234 -15.11491 -14.93043 -14.61578 -14.37357 -14.22250 -13.81590 -13.63198 -13.54639 -13.11162 -13.01744 -12.98142 -12.79994 -12.76490 -12.60380 -12.52906 -12.47811 -12.17440 -12.02953 -11.96229 -11.86579 -11.83708 -11.69113 -11.49386 -10.66087 -10.35155 -10.25614 -9.93793 -9.37347 -9.10720 -8.20629 -6.39907 0.23383 1.17704 1.31395 1.33192 1.44049 2.01987 2.32679 2.33390 3.04599 3.13773 3.28947 3.38490 3.50265 3.72533 3.89917 3.94775 4.04806 4.05082 4.25123 4.29969 4.30471 4.34274 4.47753 4.49238 4.54516 4.58243 4.70231 4.72298 4.81323 4.83058 4.94798 4.97126 4.98325 5.06526 5.10171 5.10984 5.12473 5.18643 5.24757 5.28491 5.32331 5.43610 5.68787 5.88182 5.97336 6.03145 6.10962 6.21829 6.40578 6.47638 6.59690 6.79716 6.83780 7.31691 8.82210 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.014147 B = 0.002791 C = 0.002499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1978.811731 B =10028.163503 C =11200.245486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.126 4.126 3 H 0.087 0.913 4 C 0.068 3.932 5 N -0.689 5.689 6 C 0.066 3.934 7 C -0.166 4.166 8 C 0.148 3.852 9 H 0.083 0.917 10 N -0.679 5.679 11 C 0.515 3.485 12 O -0.521 6.521 13 C 0.501 3.499 14 O -0.549 6.549 15 N -0.575 5.575 16 C 0.120 3.880 17 C 0.054 3.946 18 N -0.538 5.538 19 C 0.200 3.800 20 C -0.558 4.558 21 H 0.050 0.950 22 C 0.015 3.985 23 N -0.922 5.922 24 Si 0.955 3.045 25 H -0.273 1.273 26 H -0.276 1.276 27 H -0.275 1.275 28 C 0.055 3.945 29 C 0.072 3.928 30 H 0.076 0.924 31 H 0.048 0.952 32 H 0.054 0.946 33 H 0.098 0.902 34 H 0.073 0.927 35 H 0.349 0.651 36 H 0.072 0.928 37 H 0.085 0.915 38 H 0.055 0.945 39 H 0.071 0.929 40 H 0.417 0.583 41 H 0.094 0.906 42 H 0.097 0.903 43 H 0.018 0.982 44 H 0.082 0.918 45 H 0.012 0.988 46 H 0.009 0.991 47 H 0.266 0.734 48 H 0.014 0.986 49 H 0.076 0.924 50 H 0.155 0.845 51 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.361 4.100 26.319 27.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.146 4.146 3 H 0.105 0.895 4 C -0.062 4.062 5 N -0.317 5.317 6 C -0.065 4.065 7 C -0.207 4.207 8 C 0.044 3.956 9 H 0.101 0.899 10 N -0.330 5.330 11 C 0.296 3.704 12 O -0.400 6.400 13 C 0.284 3.716 14 O -0.428 6.428 15 N -0.307 5.307 16 C -0.002 4.002 17 C -0.075 4.075 18 N -0.262 5.262 19 C 0.074 3.926 20 C -0.597 4.597 21 H 0.068 0.932 22 C -0.185 4.185 23 N -0.562 5.562 24 Si 0.780 3.220 25 H -0.198 1.198 26 H -0.201 1.201 27 H -0.201 1.201 28 C -0.074 4.074 29 C -0.049 4.049 30 H 0.095 0.905 31 H 0.067 0.933 32 H 0.073 0.927 33 H 0.116 0.884 34 H 0.092 0.908 35 H 0.168 0.832 36 H 0.091 0.909 37 H 0.103 0.897 38 H 0.074 0.926 39 H 0.090 0.910 40 H 0.255 0.745 41 H 0.112 0.888 42 H 0.116 0.884 43 H 0.036 0.964 44 H 0.100 0.900 45 H 0.030 0.970 46 H 0.027 0.973 47 H 0.075 0.925 48 H 0.033 0.967 49 H 0.095 0.905 50 H 0.171 0.829 51 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -8.686 3.018 26.506 28.056 hybrid contribution 1.593 1.670 -1.537 2.773 sum -7.093 4.688 24.969 26.377 Atomic orbital electron populations 1.21765 0.93657 1.02309 1.02551 1.22161 0.97490 1.00616 0.94369 0.89500 1.22129 0.87055 1.01046 0.95953 1.60631 1.07736 1.22235 1.41095 1.21948 1.00708 0.97754 0.86061 1.22675 0.95108 1.02209 1.00659 1.21316 0.94349 0.96838 0.83067 0.89925 1.45868 1.65378 1.14300 1.07480 1.20018 0.78365 0.86956 0.85018 1.90353 1.50709 1.15808 1.83090 1.20249 0.79793 0.86562 0.85028 1.90709 1.48860 1.17239 1.85983 1.48210 1.62103 1.13892 1.06477 1.22028 0.97702 0.98214 0.82254 1.22324 0.96651 0.89743 0.98813 1.62471 1.45991 1.12567 1.05171 1.19445 0.88823 0.95531 0.88850 1.21960 0.99317 1.29641 1.08781 0.93211 1.25759 1.02208 0.95755 0.94756 1.70049 1.33368 1.39220 1.13549 0.85565 0.79734 0.78577 0.78140 1.19767 1.20132 1.20087 1.22252 0.95391 0.99730 0.90019 1.23343 0.98754 0.79764 1.03062 0.90509 0.93260 0.92685 0.88406 0.90843 0.83227 0.90931 0.89652 0.92610 0.91045 0.74543 0.88817 0.88434 0.96418 0.89954 0.97010 0.97251 0.92470 0.96741 0.90530 0.82900 0.89932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.44 9.06 71.98 0.65 -0.78 16 2 C -0.13 -1.24 2.43 -10.74 -0.03 -1.26 16 3 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 4 C 0.07 0.61 5.84 86.33 0.50 1.11 16 5 N -0.69 -7.34 6.87 -514.00 -3.53 -10.87 16 6 C 0.07 0.84 6.55 86.32 0.57 1.41 16 7 C -0.17 -2.59 5.66 30.64 0.17 -2.42 16 8 C 0.15 2.28 1.94 45.07 0.09 2.37 16 9 H 0.08 1.53 7.58 -2.39 -0.02 1.52 16 10 N -0.68 -12.92 4.44 -443.50 -1.97 -14.89 16 11 C 0.51 13.35 7.78 87.27 0.68 14.03 16 12 O -0.52 -15.03 12.70 -3.23 -0.04 -15.07 16 13 C 0.50 15.03 7.77 87.27 0.68 15.71 16 14 O -0.55 -17.60 15.95 -3.24 -0.05 -17.65 16 15 N -0.57 -18.21 3.00 -818.61 -2.46 -20.67 16 16 C 0.12 3.76 6.62 86.50 0.57 4.33 16 17 C 0.05 2.09 5.18 86.54 0.45 2.53 16 18 N -0.54 -23.07 4.83 -898.85 -4.34 -27.41 16 19 C 0.20 10.47 5.11 85.56 0.44 10.91 16 20 C -0.56 -31.10 7.76 25.60 0.20 -30.91 16 21 H 0.05 2.80 5.88 -2.91 -0.02 2.78 16 22 C 0.02 0.85 5.46 84.65 0.46 1.31 16 23 N -0.92 -54.63 13.29 21.45 0.28 -54.34 16 24 Si 0.95 44.26 29.54 68.60 2.03 46.29 16 25 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 26 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 27 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 28 C 0.06 2.18 5.24 86.38 0.45 2.63 16 29 C 0.07 2.29 6.35 86.35 0.55 2.84 16 30 H 0.08 0.54 8.14 -2.38 -0.02 0.52 16 31 H 0.05 0.60 7.63 -2.39 -0.02 0.58 16 32 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 33 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 34 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 35 H 0.35 2.93 8.86 -89.70 -0.79 2.14 16 36 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 37 H 0.09 1.03 8.14 -2.38 -0.02 1.01 16 38 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 39 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 40 H 0.42 7.08 8.03 -92.71 -0.74 6.34 16 41 H 0.09 2.63 8.14 -2.39 -0.02 2.61 16 42 H 0.10 2.92 7.07 -2.39 -0.02 2.90 16 43 H 0.02 0.77 6.63 -2.39 -0.02 0.76 16 44 H 0.08 3.12 8.11 -2.38 -0.02 3.10 16 45 H 0.01 0.67 8.07 -2.39 -0.02 0.65 16 46 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 47 H 0.27 14.80 8.31 -92.71 -0.77 14.03 16 48 H 0.01 0.64 7.09 -2.39 -0.02 0.62 16 49 H 0.08 3.02 8.06 -2.39 -0.02 3.00 16 50 H 0.15 4.82 3.92 -75.07 -0.29 4.52 16 51 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 Total: -1.00 -65.67 393.62 -4.52 -70.19 By element: Atomic # 1 Polarization: 21.48 SS G_CDS: -0.88 Total: 20.61 kcal Atomic # 6 Polarization: 17.39 SS G_CDS: 6.43 Total: 23.82 kcal Atomic # 7 Polarization: -116.17 SS G_CDS: -12.01 Total: -128.18 kcal Atomic # 8 Polarization: -32.63 SS G_CDS: -0.09 Total: -32.72 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 2.03 Total: 46.29 kcal Total: -65.67 -4.52 -70.19 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884716491.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.377 kcal (2) G-P(sol) polarization free energy of solvation -65.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds