Wall clock time and date at job start Tue Mar 31 2020 21:41:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 109.45770 * 2 1 4 4 C 1.53040 * 109.45940 * 119.97654 * 2 1 3 5 5 C 1.53115 * 109.27620 * 179.18915 * 4 2 1 6 6 H 1.09002 * 109.52408 * 182.37732 * 5 4 2 7 7 N 1.46502 * 109.52584 * 62.24815 * 5 4 2 8 8 C 1.34775 * 119.99940 * 155.00354 * 7 5 4 9 9 O 1.21356 * 120.00071 * 359.97438 * 8 7 5 10 10 C 1.49449 * 120.00175 * 180.02562 * 8 7 5 11 11 O 1.21348 * 119.99759 * 353.27728 * 10 8 7 12 12 N 1.34773 * 120.00407 * 173.27629 * 10 8 7 13 13 C 1.47077 * 120.87961 * 351.95545 * 12 10 8 14 14 C 1.53241 * 108.51952 * 231.15672 * 13 12 10 15 15 N 1.46894 * 109.34108 * 306.17389 * 14 13 12 16 16 C 1.46903 * 110.99670 * 187.25388 * 15 14 13 17 17 C 1.50700 * 109.46874 * 169.99825 * 16 15 14 18 18 H 1.07994 * 120.00358 * 359.97438 * 17 16 15 19 19 C 1.37881 * 119.99890 * 180.27292 * 17 16 15 20 20 N 1.31516 * 120.00035 * 359.72591 * 19 17 16 21 21 Si 1.86802 * 120.00099 * 179.72676 * 19 17 16 22 22 H 1.48494 * 109.47366 * 90.00107 * 21 19 17 23 23 H 1.48506 * 109.46755 * 210.00270 * 21 19 17 24 24 H 1.48496 * 109.46758 * 329.99663 * 21 19 17 25 25 C 1.46890 * 111.27419 * 63.10328 * 15 14 13 26 26 C 1.47079 * 120.88253 * 171.92938 * 12 10 8 27 27 C 1.53122 * 109.16066 * 302.34426 * 5 4 2 28 28 C 1.53036 * 109.27856 * 57.65313 * 27 5 4 29 29 N 1.46839 * 109.45476 * 240.02315 * 2 1 3 30 30 H 1.08999 * 109.47274 * 300.01939 * 1 2 3 31 31 H 1.09002 * 109.46858 * 60.02348 * 1 2 3 32 32 H 1.09004 * 109.46989 * 180.02562 * 1 2 3 33 33 H 1.08994 * 109.50811 * 59.24568 * 4 2 1 34 34 H 1.09006 * 109.53379 * 299.14641 * 4 2 1 35 35 H 0.96997 * 120.00009 * 335.00315 * 7 5 4 36 36 H 1.09004 * 109.62911 * 111.45292 * 13 12 10 37 37 H 1.09000 * 109.63131 * 350.87193 * 13 12 10 38 38 H 1.08998 * 109.49099 * 186.21125 * 14 13 12 39 39 H 1.09004 * 109.51101 * 66.15004 * 14 13 12 40 40 H 1.09003 * 109.47272 * 49.99984 * 16 15 14 41 41 H 1.09000 * 109.46872 * 289.99675 * 16 15 14 42 42 H 0.97001 * 119.99986 * 179.97438 * 20 19 17 43 43 H 1.09007 * 109.49034 * 56.85064 * 25 15 14 44 44 H 1.08996 * 109.49581 * 176.93124 * 25 15 14 45 45 H 1.09003 * 109.63299 * 248.55008 * 26 12 10 46 46 H 1.09004 * 109.62931 * 9.13206 * 26 12 10 47 47 H 1.08999 * 109.50264 * 177.59841 * 27 5 4 48 48 H 1.09000 * 109.49812 * 297.71468 * 27 5 4 49 49 H 1.09001 * 109.46346 * 180.80700 * 28 27 5 50 50 H 1.09005 * 109.45778 * 60.84007 * 28 27 5 51 51 H 1.00899 * 111.00293 * 54.15424 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0399 -0.7210 1.2500 5 6 3.5709 -0.7363 1.2355 6 1 3.9379 -1.2856 2.1025 7 7 4.0747 0.6387 1.2780 8 6 5.3042 0.8910 1.7690 9 8 5.9938 -0.0207 2.1763 10 6 5.8180 2.2937 1.8128 11 8 5.1821 3.1892 1.2968 12 7 6.9876 2.5642 2.4255 13 6 7.6869 1.5326 3.2065 14 6 8.0197 2.1092 4.5867 15 7 8.7558 3.3698 4.4228 16 6 9.2430 3.8669 5.7165 17 6 10.1922 5.0149 5.4882 18 1 10.4120 5.3422 4.4828 19 6 10.7849 5.6434 6.5628 20 7 10.5177 5.2446 7.7872 21 14 11.9675 7.0615 6.2796 22 1 11.2127 8.3402 6.2656 23 1 12.9736 7.0924 7.3714 24 1 12.6563 6.8788 4.9768 25 6 7.9350 4.3820 3.7451 26 6 7.5987 3.8987 2.3304 27 6 4.0546 -1.4191 -0.0468 28 6 3.4863 -0.6780 -1.2591 29 7 2.0191 -0.6918 -1.1993 30 1 -0.3634 0.5141 0.8898 31 1 -0.3633 0.5135 -0.8902 32 1 -0.3633 -1.0277 0.0005 33 1 1.6658 -1.7447 1.2577 34 1 1.6895 -0.1988 2.1403 35 1 3.5234 1.3675 0.9527 36 1 8.6076 1.2487 2.6966 37 1 7.0436 0.6600 3.3195 38 1 8.6341 1.3984 5.1393 39 1 7.0966 2.2957 5.1356 40 1 9.7620 3.0652 6.2417 41 1 8.3987 4.2072 6.3161 42 1 10.9349 5.6866 8.5432 43 1 7.0128 4.5370 4.3053 44 1 8.4878 5.3196 3.6874 45 1 8.5109 3.8422 1.7364 46 1 6.8970 4.5904 1.8643 47 1 5.1437 -1.3951 -0.0833 48 1 3.7122 -2.4538 -0.0595 49 1 3.8172 -1.1702 -2.1736 50 1 3.8404 0.3530 -1.2532 51 1 1.6194 -0.2926 -2.0354 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000884717708.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:41:31 Heat of formation + Delta-G solvation = -46.755141 kcal Electronic energy + Delta-G solvation = -30348.602552 eV Core-core repulsion = 26283.217068 eV Total energy + Delta-G solvation = -4065.385484 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.13524 -39.73330 -38.32756 -37.60671 -35.12846 -34.20247 -32.72452 -32.39797 -31.17217 -30.80634 -28.50041 -27.50147 -25.97918 -24.77673 -23.68169 -23.07235 -22.18486 -21.84473 -20.88912 -19.50265 -19.43639 -17.67167 -16.95737 -16.87579 -16.37899 -16.18239 -15.77256 -15.56603 -15.16076 -14.82176 -14.74781 -14.48607 -14.28248 -14.07108 -13.92514 -13.66184 -13.55996 -13.44842 -12.93261 -12.85693 -12.52977 -12.36127 -12.27502 -12.08234 -11.96525 -11.49651 -11.42461 -11.27528 -11.18173 -11.03179 -10.83389 -10.78855 -10.75007 -10.62442 -10.56199 -9.90622 -9.56858 -9.37207 -9.07279 -8.87362 -8.60289 -8.46310 -7.32904 -6.06183 -4.08104 1.35356 2.25734 3.13245 3.29849 3.36293 3.40088 3.42927 3.69256 4.17973 4.27204 4.30211 4.39451 4.51797 4.72328 4.82703 4.84620 4.89142 5.06566 5.20077 5.25037 5.29171 5.32883 5.37231 5.42404 5.45152 5.47735 5.54280 5.62618 5.62892 5.69562 5.73768 5.80293 5.81577 5.87755 5.96422 6.26396 6.28225 6.40347 6.48368 6.57854 6.58460 6.87238 6.92886 7.22099 7.27179 7.33117 7.63669 7.74411 7.93750 8.01368 8.11968 8.47719 8.99036 9.56369 11.04585 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.029860 B = 0.002091 C = 0.002067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 937.477684 B =13386.341205 C =13544.488398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.079 3.921 3 H 0.038 0.962 4 C -0.120 4.120 5 C 0.140 3.860 6 H 0.096 0.904 7 N -0.698 5.698 8 C 0.511 3.489 9 O -0.508 6.508 10 C 0.502 3.498 11 O -0.536 6.536 12 N -0.571 5.571 13 C 0.080 3.920 14 C 0.040 3.960 15 N -0.537 5.537 16 C 0.193 3.807 17 C -0.509 4.509 18 H 0.064 0.936 19 C 0.055 3.945 20 N -0.898 5.898 21 Si 0.899 3.101 22 H -0.281 1.281 23 H -0.287 1.287 24 H -0.273 1.273 25 C 0.052 3.948 26 C 0.110 3.890 27 C -0.128 4.128 28 C 0.056 3.944 29 N -0.685 5.685 30 H 0.062 0.938 31 H 0.055 0.945 32 H 0.065 0.935 33 H 0.090 0.910 34 H 0.076 0.924 35 H 0.409 0.591 36 H 0.076 0.924 37 H 0.130 0.870 38 H 0.083 0.917 39 H 0.024 0.976 40 H 0.032 0.968 41 H -0.009 1.009 42 H 0.262 0.738 43 H 0.025 0.975 44 H 0.099 0.901 45 H 0.079 0.921 46 H 0.090 0.910 47 H 0.074 0.926 48 H 0.083 0.917 49 H 0.076 0.924 50 H 0.033 0.967 51 H 0.343 0.657 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.816 -13.209 -16.709 28.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.031 4.031 3 H 0.056 0.944 4 C -0.158 4.158 5 C 0.036 3.964 6 H 0.114 0.886 7 N -0.352 5.352 8 C 0.293 3.707 9 O -0.384 6.384 10 C 0.284 3.716 11 O -0.414 6.414 12 N -0.303 5.303 13 C -0.041 4.041 14 C -0.090 4.090 15 N -0.262 5.262 16 C 0.069 3.931 17 C -0.548 4.548 18 H 0.082 0.918 19 C -0.146 4.146 20 N -0.537 5.537 21 Si 0.726 3.274 22 H -0.207 1.207 23 H -0.213 1.213 24 H -0.197 1.197 25 C -0.077 4.077 26 C -0.011 4.011 27 C -0.167 4.167 28 C -0.073 4.073 29 N -0.317 5.317 30 H 0.081 0.919 31 H 0.074 0.926 32 H 0.084 0.916 33 H 0.109 0.891 34 H 0.094 0.906 35 H 0.246 0.754 36 H 0.094 0.906 37 H 0.147 0.853 38 H 0.101 0.899 39 H 0.043 0.957 40 H 0.050 0.950 41 H 0.009 0.991 42 H 0.071 0.929 43 H 0.043 0.957 44 H 0.118 0.882 45 H 0.098 0.902 46 H 0.108 0.892 47 H 0.093 0.907 48 H 0.102 0.898 49 H 0.095 0.905 50 H 0.051 0.949 51 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -18.211 -14.069 -16.481 28.306 hybrid contribution 0.032 2.277 0.185 2.285 sum -18.179 -11.792 -16.296 27.113 Atomic orbital electron populations 1.21821 0.93846 1.02757 1.01974 1.21493 0.95608 0.95127 0.90852 0.94407 1.21955 0.93400 1.02948 0.97487 1.21159 0.93921 0.81852 0.99463 0.88554 1.45978 1.16371 1.10363 1.62510 1.20324 0.82348 0.89808 0.78208 1.90552 1.55845 1.46593 1.45458 1.19968 0.82235 0.88757 0.80663 1.90722 1.56762 1.46861 1.47082 1.48153 1.20230 1.14203 1.47727 1.22940 0.98719 0.91265 0.91189 1.22453 0.96882 0.94380 0.95249 1.62113 1.35498 1.02520 1.26077 1.19731 0.94360 0.95626 0.83431 1.21141 1.25639 1.14985 0.93036 0.91799 1.25003 0.96975 0.97591 0.95062 1.69958 1.44000 1.41703 0.98036 0.86487 0.80700 0.82261 0.77908 1.20734 1.21255 1.19742 1.22322 0.95981 0.97239 0.92164 1.22058 0.97865 0.82272 0.98940 1.21980 1.01017 1.00188 0.93465 1.21903 0.87421 0.99065 0.98885 1.60360 1.07293 1.59303 1.04747 0.91878 0.92601 0.91563 0.89120 0.90564 0.75435 0.90580 0.85283 0.89851 0.95735 0.94962 0.99126 0.92878 0.95664 0.88249 0.90233 0.89171 0.90717 0.89832 0.90520 0.94914 0.83857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.74 9.43 37.16 0.35 -0.39 16 2 C 0.08 0.48 2.88 -67.72 -0.19 0.29 16 3 H 0.04 0.26 6.64 -51.93 -0.34 -0.08 16 4 C -0.12 -0.75 5.04 -26.65 -0.13 -0.89 16 5 C 0.14 1.13 2.81 -67.81 -0.19 0.94 16 6 H 0.10 0.87 7.58 -51.93 -0.39 0.47 16 7 N -0.70 -6.87 4.34 -54.11 -0.23 -7.11 16 8 C 0.51 6.58 7.71 -11.59 -0.09 6.49 16 9 O -0.51 -7.17 12.87 5.49 0.07 -7.10 16 10 C 0.50 7.55 7.75 -11.59 -0.09 7.46 16 11 O -0.54 -8.79 15.96 5.50 0.09 -8.71 16 12 N -0.57 -9.04 3.01 -172.97 -0.52 -9.57 16 13 C 0.08 1.25 6.10 -3.60 -0.02 1.23 16 14 C 0.04 0.72 5.62 -3.70 -0.02 0.70 16 15 N -0.54 -11.41 4.62 -235.77 -1.09 -12.50 16 16 C 0.19 4.98 4.72 -4.97 -0.02 4.95 16 17 C -0.51 -14.05 8.41 -34.44 -0.29 -14.33 16 18 H 0.06 1.73 7.13 -52.49 -0.37 1.35 16 19 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 20 N -0.90 -26.47 13.29 55.43 0.74 -25.74 16 21 Si 0.90 21.41 29.54 -169.99 -5.02 16.39 16 22 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 23 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 24 H -0.27 -6.39 7.11 56.52 0.40 -5.98 16 25 C 0.05 1.00 5.46 -3.71 -0.02 0.98 16 26 C 0.11 1.80 6.62 -3.60 -0.02 1.77 16 27 C -0.13 -0.99 5.76 -26.65 -0.15 -1.14 16 28 C 0.06 0.40 6.40 -3.83 -0.02 0.38 16 29 N -0.68 -4.31 6.50 -106.76 -0.69 -5.00 16 30 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 31 H 0.05 0.26 8.14 -51.93 -0.42 -0.17 16 32 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.41 3.85 6.50 -40.82 -0.27 3.58 16 36 H 0.08 1.18 8.14 -51.93 -0.42 0.75 16 37 H 0.13 1.93 4.45 -54.16 -0.24 1.69 16 38 H 0.08 1.46 7.99 -51.93 -0.41 1.04 16 39 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 40 H 0.03 0.88 7.97 -51.93 -0.41 0.47 16 41 H -0.01 -0.25 8.12 -51.93 -0.42 -0.67 16 42 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 43 H 0.03 0.51 8.14 -51.92 -0.42 0.08 16 44 H 0.10 2.01 6.67 -51.93 -0.35 1.67 16 45 H 0.08 1.25 8.14 -51.93 -0.42 0.82 16 46 H 0.09 1.41 7.05 -51.93 -0.37 1.04 16 47 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 48 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 49 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 50 H 0.03 0.27 7.69 -51.93 -0.40 -0.13 16 51 H 0.34 1.79 8.79 -39.29 -0.35 1.44 16 LS Contribution 394.18 15.07 5.94 5.94 Total: -1.00 -30.99 394.18 -10.28 -41.27 By element: Atomic # 1 Polarization: 10.75 SS G_CDS: -8.53 Total: 2.22 kcal Atomic # 6 Polarization: 10.92 SS G_CDS: -1.02 Total: 9.90 kcal Atomic # 7 Polarization: -58.11 SS G_CDS: -1.80 Total: -59.91 kcal Atomic # 8 Polarization: -15.97 SS G_CDS: 0.16 Total: -15.81 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -30.99 -10.28 -41.27 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884717708.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.486 kcal (2) G-P(sol) polarization free energy of solvation -30.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds