Wall clock time and date at job start Tue Mar 31 2020 21:41:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 109.45770 * 2 1 4 4 C 1.53040 * 109.45940 * 119.97654 * 2 1 3 5 5 C 1.53115 * 109.27620 * 179.18915 * 4 2 1 6 6 H 1.09002 * 109.52408 * 182.37732 * 5 4 2 7 7 N 1.46502 * 109.52584 * 62.24815 * 5 4 2 8 8 C 1.34775 * 119.99940 * 155.00354 * 7 5 4 9 9 O 1.21356 * 120.00071 * 359.97438 * 8 7 5 10 10 C 1.49449 * 120.00175 * 180.02562 * 8 7 5 11 11 O 1.21348 * 119.99759 * 353.27728 * 10 8 7 12 12 N 1.34773 * 120.00407 * 173.27629 * 10 8 7 13 13 C 1.47077 * 120.87961 * 351.95545 * 12 10 8 14 14 C 1.53241 * 108.51952 * 231.15672 * 13 12 10 15 15 N 1.46894 * 109.34108 * 306.17389 * 14 13 12 16 16 C 1.46903 * 110.99670 * 187.25388 * 15 14 13 17 17 C 1.50700 * 109.46874 * 169.99825 * 16 15 14 18 18 H 1.07994 * 120.00358 * 359.97438 * 17 16 15 19 19 C 1.37881 * 119.99890 * 180.27292 * 17 16 15 20 20 N 1.31516 * 120.00035 * 359.72591 * 19 17 16 21 21 Si 1.86802 * 120.00099 * 179.72676 * 19 17 16 22 22 H 1.48494 * 109.47366 * 90.00107 * 21 19 17 23 23 H 1.48506 * 109.46755 * 210.00270 * 21 19 17 24 24 H 1.48496 * 109.46758 * 329.99663 * 21 19 17 25 25 C 1.46890 * 111.27419 * 63.10328 * 15 14 13 26 26 C 1.47079 * 120.88253 * 171.92938 * 12 10 8 27 27 C 1.53122 * 109.16066 * 302.34426 * 5 4 2 28 28 C 1.53036 * 109.27856 * 57.65313 * 27 5 4 29 29 N 1.46839 * 109.45476 * 240.02315 * 2 1 3 30 30 H 1.08999 * 109.47274 * 300.01939 * 1 2 3 31 31 H 1.09002 * 109.46858 * 60.02348 * 1 2 3 32 32 H 1.09004 * 109.46989 * 180.02562 * 1 2 3 33 33 H 1.08994 * 109.50811 * 59.24568 * 4 2 1 34 34 H 1.09006 * 109.53379 * 299.14641 * 4 2 1 35 35 H 0.96997 * 120.00009 * 335.00315 * 7 5 4 36 36 H 1.09004 * 109.62911 * 111.45292 * 13 12 10 37 37 H 1.09000 * 109.63131 * 350.87193 * 13 12 10 38 38 H 1.08998 * 109.49099 * 186.21125 * 14 13 12 39 39 H 1.09004 * 109.51101 * 66.15004 * 14 13 12 40 40 H 1.09003 * 109.47272 * 49.99984 * 16 15 14 41 41 H 1.09000 * 109.46872 * 289.99675 * 16 15 14 42 42 H 0.97001 * 119.99986 * 179.97438 * 20 19 17 43 43 H 1.09007 * 109.49034 * 56.85064 * 25 15 14 44 44 H 1.08996 * 109.49581 * 176.93124 * 25 15 14 45 45 H 1.09003 * 109.63299 * 248.55008 * 26 12 10 46 46 H 1.09004 * 109.62931 * 9.13206 * 26 12 10 47 47 H 1.08999 * 109.50264 * 177.59841 * 27 5 4 48 48 H 1.09000 * 109.49812 * 297.71468 * 27 5 4 49 49 H 1.09001 * 109.46346 * 180.80700 * 28 27 5 50 50 H 1.09005 * 109.45778 * 60.84007 * 28 27 5 51 51 H 1.00899 * 111.00293 * 54.15424 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0399 -0.7210 1.2500 5 6 3.5709 -0.7363 1.2355 6 1 3.9379 -1.2856 2.1025 7 7 4.0747 0.6387 1.2780 8 6 5.3042 0.8910 1.7690 9 8 5.9938 -0.0207 2.1763 10 6 5.8180 2.2937 1.8128 11 8 5.1821 3.1892 1.2968 12 7 6.9876 2.5642 2.4255 13 6 7.6869 1.5326 3.2065 14 6 8.0197 2.1092 4.5867 15 7 8.7558 3.3698 4.4228 16 6 9.2430 3.8669 5.7165 17 6 10.1922 5.0149 5.4882 18 1 10.4120 5.3422 4.4828 19 6 10.7849 5.6434 6.5628 20 7 10.5177 5.2446 7.7872 21 14 11.9675 7.0615 6.2796 22 1 11.2127 8.3402 6.2656 23 1 12.9736 7.0924 7.3714 24 1 12.6563 6.8788 4.9768 25 6 7.9350 4.3820 3.7451 26 6 7.5987 3.8987 2.3304 27 6 4.0546 -1.4191 -0.0468 28 6 3.4863 -0.6780 -1.2591 29 7 2.0191 -0.6918 -1.1993 30 1 -0.3634 0.5141 0.8898 31 1 -0.3633 0.5135 -0.8902 32 1 -0.3633 -1.0277 0.0005 33 1 1.6658 -1.7447 1.2577 34 1 1.6895 -0.1988 2.1403 35 1 3.5234 1.3675 0.9527 36 1 8.6076 1.2487 2.6966 37 1 7.0436 0.6600 3.3195 38 1 8.6341 1.3984 5.1393 39 1 7.0966 2.2957 5.1356 40 1 9.7620 3.0652 6.2417 41 1 8.3987 4.2072 6.3161 42 1 10.9349 5.6866 8.5432 43 1 7.0128 4.5370 4.3053 44 1 8.4878 5.3196 3.6874 45 1 8.5109 3.8422 1.7364 46 1 6.8970 4.5904 1.8643 47 1 5.1437 -1.3951 -0.0833 48 1 3.7122 -2.4538 -0.0595 49 1 3.8172 -1.1702 -2.1736 50 1 3.8404 0.3530 -1.2532 51 1 1.6194 -0.2926 -2.0354 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000884717708.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:41:29 Heat of formation + Delta-G solvation = -70.247640 kcal Electronic energy + Delta-G solvation = -30349.621263 eV Core-core repulsion = 26283.217068 eV Total energy + Delta-G solvation = -4066.404195 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.19750 -40.67105 -39.33799 -39.00346 -36.32981 -35.41850 -34.38025 -33.25599 -32.25131 -31.87396 -30.23775 -28.01990 -27.61210 -26.07420 -24.64033 -24.26344 -23.65266 -22.68325 -22.15829 -20.76978 -20.17575 -18.90711 -18.43826 -18.13069 -17.42766 -17.25683 -16.89805 -16.56611 -16.35249 -16.09711 -15.94786 -15.69271 -15.59368 -15.42166 -15.10263 -14.85372 -14.56176 -14.30755 -14.14374 -14.11155 -13.68974 -13.34051 -13.14179 -12.97079 -12.80876 -12.79137 -12.77428 -12.63745 -12.58215 -12.36463 -12.26093 -12.18238 -11.98179 -11.78970 -11.71616 -11.36184 -11.34205 -10.64194 -10.48925 -10.22162 -9.95707 -9.39714 -9.10859 -8.21492 -6.31750 0.23132 1.18289 1.41997 1.43160 1.54811 2.00104 2.32331 2.40708 3.10521 3.15037 3.20584 3.22622 3.65525 3.74489 3.90733 3.94918 3.98644 4.14714 4.17397 4.24855 4.31191 4.34759 4.37738 4.48513 4.50980 4.65703 4.73023 4.77355 4.78721 4.83009 4.88500 4.92783 4.95988 4.99762 5.05121 5.08092 5.14743 5.17413 5.18696 5.26539 5.37750 5.41321 5.62288 5.87660 6.01000 6.06273 6.11398 6.24737 6.46137 6.53441 6.56541 6.82241 6.83802 7.37986 8.89712 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.029860 B = 0.002091 C = 0.002067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 937.477684 B =13386.341205 C =13544.488398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.078 3.922 3 H 0.031 0.969 4 C -0.114 4.114 5 C 0.138 3.862 6 H 0.090 0.910 7 N -0.681 5.681 8 C 0.515 3.485 9 O -0.522 6.522 10 C 0.502 3.498 11 O -0.549 6.549 12 N -0.579 5.579 13 C 0.095 3.905 14 C 0.039 3.961 15 N -0.540 5.540 16 C 0.208 3.792 17 C -0.523 4.523 18 H 0.067 0.933 19 C 0.000 4.000 20 N -0.935 5.935 21 Si 0.971 3.029 22 H -0.273 1.273 23 H -0.284 1.284 24 H -0.263 1.263 25 C 0.055 3.945 26 C 0.121 3.879 27 C -0.124 4.124 28 C 0.059 3.941 29 N -0.683 5.683 30 H 0.066 0.934 31 H 0.060 0.940 32 H 0.066 0.934 33 H 0.100 0.900 34 H 0.081 0.919 35 H 0.413 0.587 36 H 0.082 0.918 37 H 0.142 0.858 38 H 0.086 0.914 39 H 0.017 0.983 40 H 0.009 0.991 41 H -0.041 1.041 42 H 0.264 0.736 43 H 0.013 0.987 44 H 0.087 0.913 45 H 0.090 0.910 46 H 0.100 0.900 47 H 0.059 0.941 48 H 0.093 0.907 49 H 0.084 0.916 50 H 0.020 0.980 51 H 0.351 0.649 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.610 -13.542 -18.503 30.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.032 4.032 3 H 0.049 0.951 4 C -0.152 4.152 5 C 0.034 3.966 6 H 0.108 0.892 7 N -0.334 5.334 8 C 0.296 3.704 9 O -0.400 6.400 10 C 0.285 3.715 11 O -0.428 6.428 12 N -0.311 5.311 13 C -0.026 4.026 14 C -0.090 4.090 15 N -0.265 5.265 16 C 0.082 3.918 17 C -0.561 4.561 18 H 0.086 0.914 19 C -0.198 4.198 20 N -0.575 5.575 21 Si 0.796 3.204 22 H -0.199 1.199 23 H -0.209 1.209 24 H -0.187 1.187 25 C -0.073 4.073 26 C -0.001 4.001 27 C -0.163 4.163 28 C -0.070 4.070 29 N -0.317 5.317 30 H 0.085 0.915 31 H 0.079 0.921 32 H 0.085 0.915 33 H 0.118 0.882 34 H 0.099 0.901 35 H 0.250 0.750 36 H 0.100 0.900 37 H 0.159 0.841 38 H 0.105 0.895 39 H 0.035 0.965 40 H 0.027 0.973 41 H -0.023 1.023 42 H 0.073 0.927 43 H 0.031 0.969 44 H 0.105 0.895 45 H 0.108 0.892 46 H 0.118 0.882 47 H 0.078 0.922 48 H 0.111 0.889 49 H 0.103 0.897 50 H 0.038 0.962 51 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -19.053 -14.418 -18.316 30.106 hybrid contribution 0.177 2.329 0.721 2.444 sum -18.875 -12.089 -17.595 28.496 Atomic orbital electron populations 1.21783 0.92812 1.02930 1.02446 1.21522 0.96406 0.94609 0.90658 0.95124 1.21943 0.91726 1.03660 0.97886 1.21333 0.95203 0.80522 0.99508 0.89194 1.45977 1.15150 1.11436 1.60883 1.19927 0.83176 0.88516 0.78794 1.90535 1.56431 1.46397 1.46629 1.20344 0.81576 0.89677 0.79883 1.90713 1.56953 1.47627 1.47482 1.48194 1.20722 1.13964 1.48221 1.22851 0.99238 0.91147 0.89384 1.22545 0.96191 0.93019 0.97225 1.62046 1.37019 1.03882 1.23543 1.19386 0.92922 0.94519 0.84964 1.21454 1.25870 1.15511 0.93281 0.91448 1.25940 0.98752 1.00390 0.94698 1.70090 1.45228 1.43198 0.98991 0.85354 0.78274 0.78726 0.78092 1.19890 1.20928 1.18711 1.22288 0.94767 0.96538 0.93756 1.21898 0.98675 0.82874 0.96609 1.21934 1.00111 1.00775 0.93435 1.21854 0.87969 0.98271 0.98905 1.60367 1.06683 1.59383 1.05222 0.91471 0.92136 0.91495 0.88200 0.90065 0.74966 0.89997 0.84113 0.89530 0.96454 0.97316 1.02296 0.92696 0.96917 0.89462 0.89182 0.88215 0.92187 0.88871 0.89748 0.96156 0.83030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.13 9.43 71.98 0.68 -0.45 16 2 C 0.08 0.80 2.88 44.94 0.13 0.93 16 3 H 0.03 0.37 6.64 -2.39 -0.02 0.35 16 4 C -0.11 -1.21 5.04 30.65 0.15 -1.06 16 5 C 0.14 2.02 2.81 45.07 0.13 2.15 16 6 H 0.09 1.50 7.58 -2.39 -0.02 1.48 16 7 N -0.68 -12.52 4.34 -443.48 -1.92 -14.44 16 8 C 0.51 12.63 7.71 87.27 0.67 13.30 16 9 O -0.52 -14.09 12.87 -3.27 -0.04 -14.13 16 10 C 0.50 14.53 7.75 87.27 0.68 15.21 16 11 O -0.55 -17.33 15.96 -3.24 -0.05 -17.38 16 12 N -0.58 -17.76 3.01 -819.52 -2.47 -20.23 16 13 C 0.10 2.88 6.10 86.35 0.53 3.41 16 14 C 0.04 1.43 5.62 86.38 0.49 1.91 16 15 N -0.54 -23.33 4.62 -899.84 -4.16 -27.49 16 16 C 0.21 11.11 4.72 85.56 0.40 11.51 16 17 C -0.52 -29.28 8.41 25.60 0.22 -29.07 16 18 H 0.07 3.65 7.13 -2.91 -0.02 3.63 16 19 C 0.00 0.01 5.46 84.66 0.46 0.48 16 20 N -0.93 -56.20 13.29 21.45 0.28 -55.92 16 21 Si 0.97 43.97 29.54 68.60 2.03 45.99 16 22 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 23 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 24 H -0.26 -11.41 7.11 99.48 0.71 -10.70 16 25 C 0.06 2.16 5.46 86.38 0.47 2.63 16 26 C 0.12 3.84 6.62 86.35 0.57 4.41 16 27 C -0.12 -1.73 5.76 30.65 0.18 -1.56 16 28 C 0.06 0.75 6.40 86.33 0.55 1.30 16 29 N -0.68 -7.25 6.50 -491.68 -3.20 -10.45 16 30 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 31 H 0.06 0.43 8.14 -2.39 -0.02 0.41 16 32 H 0.07 0.54 8.14 -2.38 -0.02 0.52 16 33 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 34 H 0.08 0.81 8.14 -2.38 -0.02 0.79 16 35 H 0.41 7.18 6.50 -92.71 -0.60 6.57 16 36 H 0.08 2.42 8.14 -2.38 -0.02 2.40 16 37 H 0.14 4.05 4.45 -37.67 -0.17 3.88 16 38 H 0.09 3.07 7.99 -2.39 -0.02 3.05 16 39 H 0.02 0.65 8.14 -2.38 -0.02 0.63 16 40 H 0.01 0.50 7.97 -2.39 -0.02 0.48 16 41 H -0.04 -2.38 8.12 -2.39 -0.02 -2.40 16 42 H 0.26 14.95 8.31 -92.71 -0.77 14.18 16 43 H 0.01 0.52 8.14 -2.38 -0.02 0.50 16 44 H 0.09 3.59 6.67 -2.39 -0.02 3.57 16 45 H 0.09 2.69 8.14 -2.39 -0.02 2.67 16 46 H 0.10 2.99 7.05 -2.39 -0.02 2.97 16 47 H 0.06 1.03 8.14 -2.39 -0.02 1.02 16 48 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 49 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 50 H 0.02 0.31 7.69 -2.38 -0.02 0.29 16 51 H 0.35 2.96 8.79 -89.69 -0.79 2.17 16 Total: -1.00 -66.38 394.18 -3.83 -70.21 By element: Atomic # 1 Polarization: 19.32 SS G_CDS: -0.60 Total: 18.72 kcal Atomic # 6 Polarization: 18.80 SS G_CDS: 6.30 Total: 25.11 kcal Atomic # 7 Polarization: -117.06 SS G_CDS: -11.46 Total: -128.52 kcal Atomic # 8 Polarization: -31.42 SS G_CDS: -0.09 Total: -31.51 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 45.99 kcal Total: -66.38 -3.83 -70.21 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884717708.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.036 kcal (2) G-P(sol) polarization free energy of solvation -66.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds