Wall clock time and date at job start Tue Mar 31 2020 21:45:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.52545 * 2 1 4 4 C 1.53118 * 109.52691 * 239.87420 * 2 1 3 5 5 C 1.53029 * 109.28616 * 182.37603 * 4 2 1 6 6 N 1.46847 * 109.52131 * 59.17669 * 5 4 2 7 7 C 1.46845 * 111.20112 * 298.25905 * 6 5 4 8 8 C 1.53040 * 109.51045 * 61.74814 * 7 6 5 9 9 H 1.08994 * 109.50599 * 60.75631 * 8 7 6 10 10 N 1.46507 * 109.50135 * 180.87615 * 8 7 6 11 11 C 1.34777 * 119.99654 * 274.99563 * 10 8 7 12 12 O 1.21352 * 119.99998 * 0.02562 * 11 10 8 13 13 C 1.49457 * 119.99696 * 179.97438 * 11 10 8 14 14 O 1.21341 * 120.00069 * 6.37940 * 13 11 10 15 15 N 1.34773 * 119.99424 * 186.37437 * 13 11 10 16 16 C 1.47080 * 120.88645 * 7.93912 * 15 13 11 17 17 C 1.53695 * 108.27612 * 128.75565 * 16 15 13 18 18 N 1.46898 * 109.26043 * 54.07886 * 17 16 15 19 19 C 1.46901 * 111.00067 * 172.60871 * 18 17 16 20 20 C 1.50696 * 109.47105 * 59.52109 * 19 18 17 21 21 H 1.07994 * 120.00304 * 355.39024 * 20 19 18 22 22 C 1.37884 * 119.99535 * 175.38500 * 20 19 18 23 23 N 1.31508 * 120.00429 * 0.02562 * 22 20 19 24 24 Si 1.86804 * 119.99436 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47479 * 359.97438 * 24 22 20 26 26 H 1.48507 * 109.46974 * 120.00040 * 24 22 20 27 27 H 1.48498 * 109.47159 * 239.99978 * 24 22 20 28 28 C 1.46900 * 111.27376 * 296.75840 * 18 17 16 29 29 C 1.47088 * 120.87934 * 188.21567 * 15 13 11 30 30 H 1.09000 * 109.47046 * 180.12563 * 1 2 3 31 31 H 1.09000 * 109.46598 * 300.12472 * 1 2 3 32 32 H 1.08996 * 109.46807 * 60.12277 * 1 2 3 33 33 H 1.08999 * 109.50123 * 62.43067 * 4 2 1 34 34 H 1.09002 * 109.53334 * 302.34479 * 4 2 1 35 35 H 1.09001 * 109.46369 * 299.16617 * 5 4 2 36 36 H 1.08994 * 109.46159 * 179.18876 * 5 4 2 37 37 H 1.00902 * 110.99851 * 174.16223 * 6 5 4 38 38 H 1.09002 * 109.46661 * 181.75423 * 7 6 5 39 39 H 1.08999 * 109.46526 * 301.73798 * 7 6 5 40 40 H 0.96991 * 119.99945 * 94.99912 * 10 8 7 41 41 H 1.08999 * 109.62677 * 248.51637 * 16 15 13 42 42 H 1.08993 * 109.62712 * 9.10312 * 16 15 13 43 43 H 1.09004 * 109.64902 * 294.07549 * 17 16 15 44 44 H 1.09006 * 109.42362 * 173.95098 * 17 16 15 45 45 H 1.08999 * 109.47503 * 179.52595 * 19 18 17 46 46 H 1.09004 * 109.47430 * 299.52053 * 19 18 17 47 47 H 0.97002 * 120.00162 * 179.97438 * 23 22 20 48 48 H 1.09000 * 109.49161 * 303.14492 * 28 18 17 49 49 H 1.08992 * 109.49464 * 183.05778 * 28 18 17 50 50 H 1.09002 * 109.62372 * 350.89745 * 29 15 13 51 51 H 1.08995 * 109.63067 * 111.27755 * 29 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0418 -0.7243 -1.2482 5 6 3.5709 -0.7731 -1.2129 6 7 4.0116 -1.4766 -0.0016 7 6 3.5723 -0.7735 1.2104 8 6 2.0431 -0.7251 1.2472 9 1 1.6471 -1.7404 1.2668 10 7 1.6053 -0.0053 2.4459 11 6 1.4836 -0.6596 3.6179 12 8 1.7370 -1.8447 3.6803 13 6 1.0375 0.0747 4.8408 14 8 0.6743 1.2294 4.7564 15 7 1.0387 -0.5457 6.0372 16 6 1.6344 -1.8813 6.1945 17 6 2.6129 -1.8361 7.3789 18 7 1.9141 -1.3246 8.5655 19 6 2.7613 -1.4290 9.7611 20 6 4.0247 -0.6345 9.5525 21 1 4.2170 -0.1665 8.5984 22 6 4.9351 -0.5050 10.5799 23 7 4.7011 -1.0752 11.7416 24 14 6.5008 0.4805 10.3216 25 1 6.5261 1.0156 8.9366 26 1 6.5422 1.6066 11.2888 27 1 7.6792 -0.3979 10.5338 28 6 1.4593 0.0573 8.3617 29 6 0.4389 0.0923 7.2190 30 1 -0.3633 -1.0277 0.0023 31 1 -0.3632 0.5158 0.8889 32 1 -0.3633 0.5119 -0.8911 33 1 1.7152 -0.1884 -2.1394 34 1 1.6456 -1.7396 -1.2686 35 1 3.9666 0.2425 -1.2072 36 1 3.9378 -1.3008 -2.0932 37 1 5.0123 -1.6054 -0.0022 38 1 3.9401 -1.3016 2.0901 39 1 3.9678 0.2422 1.2046 40 1 1.4030 0.9419 2.3959 41 1 0.8495 -2.6113 6.3919 42 1 2.1705 -2.1525 5.2851 43 1 3.4494 -1.1799 7.1384 44 1 2.9846 -2.8408 7.5805 45 1 2.2229 -1.0357 10.6234 46 1 3.0144 -2.4746 9.9369 47 1 5.3418 -0.9844 12.4643 48 1 2.3118 0.6871 8.1075 49 1 0.9942 0.4257 9.2760 50 1 0.1842 1.1264 6.9871 51 1 -0.4607 -0.4497 7.5107 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000884720024.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:45:48 Heat of formation + Delta-G solvation = -49.095479 kcal Electronic energy + Delta-G solvation = -30665.892051 eV Core-core repulsion = 26600.405082 eV Total energy + Delta-G solvation = -4065.486969 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.01151 -39.61428 -38.26626 -37.55453 -35.19729 -34.30189 -33.41131 -32.31326 -30.69283 -30.17992 -28.37312 -27.69371 -25.81214 -24.56946 -23.29808 -22.79300 -22.47787 -21.77224 -20.74612 -20.24138 -19.16362 -17.64760 -17.26855 -16.73079 -16.27064 -16.00394 -15.72922 -15.10544 -14.99811 -14.80433 -14.68739 -14.42836 -14.31459 -14.13259 -13.89255 -13.75640 -13.55031 -13.38604 -12.99891 -12.72995 -12.61868 -12.35366 -12.24478 -11.86942 -11.81517 -11.44134 -11.25013 -11.16061 -11.01608 -10.99707 -10.87345 -10.81480 -10.66892 -10.61348 -10.26101 -9.93993 -9.68949 -9.47904 -9.06170 -8.84763 -8.53002 -8.47269 -7.25742 -6.07084 -4.16382 1.43393 2.29948 3.21705 3.23529 3.31909 3.35390 3.44104 3.91367 4.17794 4.33856 4.34905 4.37223 4.43751 4.80015 4.90368 4.96904 5.00309 5.06852 5.14770 5.23305 5.27171 5.40981 5.41987 5.50596 5.53148 5.54982 5.57176 5.63531 5.69644 5.80240 5.81491 5.87036 5.94875 5.99292 6.04156 6.30874 6.46376 6.56992 6.62551 6.63129 6.72747 6.94475 6.98445 7.20744 7.40114 7.47869 7.72252 7.85063 7.96121 8.02855 8.18677 8.24415 8.93716 9.50974 10.98044 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.015052 B = 0.002692 C = 0.002451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1859.725190 B =10399.534167 C =11422.875817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.101 4.101 3 H 0.074 0.926 4 C -0.109 4.109 5 C 0.053 3.947 6 N -0.685 5.685 7 C 0.046 3.954 8 C 0.152 3.848 9 H 0.102 0.898 10 N -0.698 5.698 11 C 0.512 3.488 12 O -0.504 6.504 13 C 0.503 3.497 14 O -0.536 6.536 15 N -0.569 5.569 16 C 0.077 3.923 17 C 0.049 3.951 18 N -0.542 5.542 19 C 0.187 3.813 20 C -0.551 4.551 21 H 0.056 0.944 22 C 0.066 3.934 23 N -0.889 5.889 24 Si 0.888 3.112 25 H -0.275 1.275 26 H -0.283 1.283 27 H -0.283 1.283 28 C 0.051 3.949 29 C 0.111 3.889 30 H 0.058 0.942 31 H 0.059 0.941 32 H 0.058 0.942 33 H 0.072 0.928 34 H 0.076 0.924 35 H 0.031 0.969 36 H 0.077 0.923 37 H 0.348 0.652 38 H 0.084 0.916 39 H 0.034 0.966 40 H 0.411 0.589 41 H 0.072 0.928 42 H 0.130 0.870 43 H 0.041 0.959 44 H 0.080 0.920 45 H 0.035 0.965 46 H 0.031 0.969 47 H 0.262 0.738 48 H 0.043 0.957 49 H 0.080 0.920 50 H 0.089 0.911 51 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.646 1.585 -25.453 26.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.120 4.120 3 H 0.092 0.908 4 C -0.147 4.147 5 C -0.076 4.076 6 N -0.317 5.317 7 C -0.084 4.084 8 C 0.047 3.953 9 H 0.120 0.880 10 N -0.351 5.351 11 C 0.293 3.707 12 O -0.380 6.380 13 C 0.285 3.715 14 O -0.414 6.414 15 N -0.302 5.302 16 C -0.045 4.045 17 C -0.080 4.080 18 N -0.266 5.266 19 C 0.062 3.938 20 C -0.590 4.590 21 H 0.074 0.926 22 C -0.137 4.137 23 N -0.528 5.528 24 Si 0.716 3.284 25 H -0.199 1.199 26 H -0.209 1.209 27 H -0.209 1.209 28 C -0.078 4.078 29 C -0.011 4.011 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.091 0.909 34 H 0.094 0.906 35 H 0.049 0.951 36 H 0.096 0.904 37 H 0.167 0.833 38 H 0.102 0.898 39 H 0.052 0.948 40 H 0.247 0.753 41 H 0.090 0.910 42 H 0.147 0.853 43 H 0.059 0.941 44 H 0.098 0.902 45 H 0.053 0.947 46 H 0.049 0.951 47 H 0.072 0.928 48 H 0.061 0.939 49 H 0.099 0.901 50 H 0.107 0.893 51 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -7.535 0.573 -25.166 26.276 hybrid contribution 2.312 2.280 0.054 3.248 sum -5.222 2.854 -25.112 25.808 Atomic orbital electron populations 1.21830 0.94141 1.02460 1.02110 1.21468 0.96682 0.99642 0.94188 0.90786 1.21616 0.94847 1.01555 0.96716 1.21989 0.95925 0.96598 0.93121 1.60142 1.19088 1.51192 1.01307 1.22300 0.95302 0.97099 0.93717 1.21078 0.93772 0.97695 0.82763 0.87984 1.45803 1.67114 1.14164 1.08054 1.20335 0.78192 0.87320 0.84805 1.90563 1.48516 1.15185 1.83745 1.19937 0.80424 0.86567 0.84615 1.90718 1.48795 1.16102 1.85816 1.48113 1.54934 1.19580 1.07528 1.23127 0.97724 0.81687 1.01945 1.22380 0.94638 1.01015 0.89975 1.62518 1.41048 1.18442 1.04612 1.19773 0.90025 0.97203 0.86843 1.21776 1.05478 1.33327 0.98399 0.92574 1.24956 0.98192 0.95480 0.95081 1.69944 1.36139 1.43796 1.02914 0.86600 0.83557 0.80044 0.78186 1.19944 1.20897 1.20870 1.22217 0.96963 0.91879 0.96737 1.22027 0.96501 0.98691 0.83882 0.92252 0.92220 0.92280 0.90897 0.90577 0.95107 0.90422 0.83300 0.89783 0.94786 0.75256 0.90971 0.85307 0.94058 0.90186 0.94669 0.95134 0.92806 0.93876 0.90130 0.89283 0.90655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 9.07 37.16 0.34 -0.65 16 2 C -0.10 -0.69 2.34 -90.50 -0.21 -0.91 16 3 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 4 C -0.11 -0.66 5.38 -26.66 -0.14 -0.80 16 5 C 0.05 0.33 6.55 -3.84 -0.03 0.31 16 6 N -0.69 -5.43 6.84 -113.82 -0.78 -6.20 16 7 C 0.05 0.43 6.12 -3.83 -0.02 0.40 16 8 C 0.15 1.39 2.04 -67.84 -0.14 1.26 16 9 H 0.10 1.13 7.58 -51.93 -0.39 0.74 16 10 N -0.70 -7.31 4.45 -54.15 -0.24 -7.55 16 11 C 0.51 6.95 7.71 -11.58 -0.09 6.86 16 12 O -0.50 -7.58 12.86 5.49 0.07 -7.51 16 13 C 0.50 7.85 7.75 -11.58 -0.09 7.76 16 14 O -0.54 -9.03 15.96 5.50 0.09 -8.95 16 15 N -0.57 -9.28 3.00 -172.69 -0.52 -9.80 16 16 C 0.08 1.25 6.14 -3.36 -0.02 1.23 16 17 C 0.05 0.95 5.17 -3.46 -0.02 0.93 16 18 N -0.54 -11.38 4.83 -235.47 -1.14 -12.51 16 19 C 0.19 4.72 5.11 -4.98 -0.03 4.70 16 20 C -0.55 -14.98 7.76 -34.44 -0.27 -15.25 16 21 H 0.06 1.54 5.87 -52.49 -0.31 1.23 16 22 C 0.07 1.83 5.46 -17.82 -0.10 1.74 16 23 N -0.89 -25.92 13.29 55.43 0.74 -25.19 16 24 Si 0.89 21.42 29.54 -169.99 -5.02 16.40 16 25 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 26 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 27 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 28 C 0.05 0.99 5.25 -3.70 -0.02 0.97 16 29 C 0.11 1.79 6.61 -3.60 -0.02 1.77 16 30 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.44 7.63 -51.93 -0.40 0.05 16 32 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 33 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 35 H 0.03 0.19 8.14 -51.93 -0.42 -0.23 16 36 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 37 H 0.35 2.33 8.90 -39.29 -0.35 1.98 16 38 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.03 0.30 8.14 -51.93 -0.42 -0.12 16 40 H 0.41 3.92 8.01 -40.82 -0.33 3.59 16 41 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 42 H 0.13 2.07 4.43 -54.28 -0.24 1.83 16 43 H 0.04 0.88 6.62 -51.93 -0.34 0.54 16 44 H 0.08 1.53 8.11 -51.93 -0.42 1.11 16 45 H 0.04 0.95 8.07 -51.93 -0.42 0.53 16 46 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 47 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 48 H 0.04 0.93 7.10 -51.93 -0.37 0.56 16 49 H 0.08 1.51 8.06 -51.93 -0.42 1.09 16 50 H 0.09 1.39 7.05 -51.93 -0.37 1.03 16 51 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 LS Contribution 394.00 15.07 5.94 5.94 Total: -1.00 -30.63 394.00 -10.28 -40.91 By element: Atomic # 1 Polarization: 12.73 SS G_CDS: -8.56 Total: 4.17 kcal Atomic # 6 Polarization: 11.15 SS G_CDS: -0.86 Total: 10.30 kcal Atomic # 7 Polarization: -59.32 SS G_CDS: -1.94 Total: -61.26 kcal Atomic # 8 Polarization: -16.61 SS G_CDS: 0.16 Total: -16.46 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -30.63 -10.28 -40.91 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884720024.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.188 kcal (2) G-P(sol) polarization free energy of solvation -30.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds