Wall clock time and date at job start Tue Mar 31 2020 21:46:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08994 * 109.52329 * 2 1 4 4 C 1.53114 * 109.52292 * 120.12893 * 2 1 3 5 5 C 1.53038 * 109.28058 * 177.55891 * 4 2 1 6 6 N 1.46847 * 109.51998 * 300.81860 * 5 4 2 7 7 C 1.46848 * 111.20062 * 61.73841 * 6 5 4 8 8 C 1.53035 * 109.52750 * 298.26040 * 7 6 5 9 9 H 1.09003 * 109.49884 * 299.24007 * 8 7 6 10 10 N 1.46494 * 109.50871 * 179.11653 * 8 7 6 11 11 C 1.34780 * 119.99934 * 85.19427 * 10 8 7 12 12 O 1.21346 * 119.99792 * 0.02562 * 11 10 8 13 13 C 1.49445 * 119.99866 * 180.02562 * 11 10 8 14 14 O 1.21346 * 120.00386 * 6.69870 * 13 11 10 15 15 N 1.34781 * 119.99793 * 186.70667 * 13 11 10 16 16 C 1.47075 * 120.88028 * 7.83335 * 15 13 11 17 17 C 1.53696 * 108.27827 * 128.75383 * 16 15 13 18 18 N 1.46901 * 109.25884 * 54.08188 * 17 16 15 19 19 C 1.46897 * 111.00373 * 172.60802 * 18 17 16 20 20 C 1.50704 * 109.46868 * 294.29974 * 19 18 17 21 21 H 1.08000 * 120.00229 * 359.97438 * 20 19 18 22 22 C 1.37878 * 119.99745 * 179.97438 * 20 19 18 23 23 N 1.31514 * 119.99941 * 0.02562 * 22 20 19 24 24 Si 1.86801 * 119.99736 * 179.97438 * 22 20 19 25 25 H 1.48496 * 109.47198 * 0.02562 * 24 22 20 26 26 H 1.48500 * 109.46671 * 120.00353 * 24 22 20 27 27 H 1.48496 * 109.47156 * 239.99929 * 24 22 20 28 28 C 1.46902 * 111.26642 * 296.76032 * 18 17 16 29 29 C 1.47079 * 120.87876 * 188.10413 * 15 13 11 30 30 H 1.09004 * 109.47398 * 299.87469 * 1 2 3 31 31 H 1.09003 * 109.47585 * 179.87735 * 1 2 3 32 32 H 1.09002 * 109.47438 * 59.87310 * 1 2 3 33 33 H 1.09005 * 109.50464 * 297.49922 * 4 2 1 34 34 H 1.08996 * 109.50835 * 57.57376 * 4 2 1 35 35 H 1.08997 * 109.46538 * 60.82983 * 5 4 2 36 36 H 1.09002 * 109.46592 * 180.80359 * 5 4 2 37 37 H 1.00901 * 110.99988 * 185.83671 * 6 5 4 38 38 H 1.09009 * 109.45677 * 58.27483 * 7 6 5 39 39 H 1.09000 * 109.46637 * 178.25206 * 7 6 5 40 40 H 0.96997 * 119.99835 * 265.19840 * 10 8 7 41 41 H 1.09005 * 109.62656 * 248.51838 * 16 15 13 42 42 H 1.08999 * 109.63322 * 9.10118 * 16 15 13 43 43 H 1.08997 * 109.64554 * 294.07382 * 17 16 15 44 44 H 1.09004 * 109.42212 * 173.94622 * 17 16 15 45 45 H 1.09000 * 109.47228 * 54.29709 * 19 18 17 46 46 H 1.08996 * 109.47179 * 174.30319 * 19 18 17 47 47 H 0.97004 * 119.99546 * 179.97438 * 23 22 20 48 48 H 1.09010 * 109.48851 * 303.14216 * 28 18 17 49 49 H 1.08997 * 109.51487 * 183.08017 * 28 18 17 50 50 H 1.09000 * 109.63129 * 350.90291 * 29 15 13 51 51 H 1.09005 * 109.62384 * 111.28885 * 29 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0273 0.0000 4 6 2.0417 -0.7244 1.2481 5 6 3.5708 -0.7745 1.2120 6 7 4.0101 -1.4790 0.0008 7 6 3.5707 -0.7760 -1.2113 8 6 2.0416 -0.7258 -1.2475 9 1 1.6446 -1.7408 -1.2665 10 7 1.6040 -0.0060 -2.4461 11 6 1.4772 -0.6613 -3.6170 12 8 1.7251 -1.8476 -3.6782 13 6 1.0314 0.0731 -4.8398 14 8 0.9007 1.2791 -4.8094 15 7 0.7743 -0.6042 -5.9764 16 6 0.7594 -2.0748 -5.9918 17 6 -0.5541 -2.5367 -6.6426 18 7 -0.6922 -1.9009 -7.9597 19 6 -1.8436 -2.4474 -8.6901 20 6 -1.5931 -3.8989 -9.0090 21 1 -0.6707 -4.3682 -8.7004 22 6 -2.5416 -4.6275 -9.6949 23 7 -3.6646 -4.0558 -10.0712 24 14 -2.2309 -6.4265 -10.0909 25 1 -0.9023 -6.8273 -9.5624 26 1 -3.2857 -7.2611 -9.4616 27 1 -2.2580 -6.6212 -11.5628 28 6 -0.7907 -0.4402 -7.8384 29 6 0.5070 0.1077 -7.2353 30 1 -0.3634 0.5119 0.8911 31 1 -0.3634 -1.0277 -0.0022 32 1 -0.3634 0.5158 -0.8888 33 1 1.7161 -0.1879 2.1394 34 1 1.6441 -1.7390 1.2688 35 1 3.9675 0.2407 1.2057 36 1 3.9378 -1.3023 2.0924 37 1 5.0108 -1.6087 0.0008 38 1 3.9674 0.2393 -1.2062 39 1 3.9375 -1.3048 -2.0911 40 1 1.4056 0.9422 -2.3969 41 1 1.6071 -2.4435 -6.5694 42 1 0.8163 -2.4524 -4.9709 43 1 -1.3958 -2.2521 -6.0112 44 1 -0.5383 -3.6201 -6.7616 45 1 -2.7390 -2.3599 -8.0748 46 1 -1.9835 -1.8907 -9.6167 47 1 -4.3317 -4.5684 -10.5540 48 1 -1.6292 -0.1848 -7.1904 49 1 -0.9467 -0.0027 -8.8245 50 1 0.3971 1.1739 -7.0369 51 1 1.3326 -0.0524 -7.9288 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000884720027.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:46:00 Heat of formation + Delta-G solvation = -47.933274 kcal Electronic energy + Delta-G solvation = -30387.260328 eV Core-core repulsion = 26321.823756 eV Total energy + Delta-G solvation = -4065.436572 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.84 seconds Orbital eigenvalues (eV) -41.05879 -39.65720 -38.30339 -37.57700 -35.20947 -34.29024 -33.43616 -32.38996 -30.78713 -30.21589 -28.42376 -27.72386 -26.04305 -24.52296 -23.37164 -22.79610 -22.48131 -21.60954 -20.77988 -20.34610 -19.23673 -17.63606 -17.30982 -16.73657 -16.34568 -16.12619 -15.66344 -15.17266 -15.06954 -14.74732 -14.70787 -14.48195 -14.29688 -14.15790 -13.91357 -13.85804 -13.56455 -13.50901 -13.03157 -12.81419 -12.67369 -12.34934 -12.29917 -11.94368 -11.81299 -11.50142 -11.27362 -11.25093 -11.04737 -11.01129 -10.92267 -10.80365 -10.71471 -10.58613 -10.49458 -9.90122 -9.56546 -9.26461 -9.08330 -8.88350 -8.58838 -8.44677 -7.31296 -6.04773 -4.06403 1.38272 2.24890 3.15539 3.30780 3.38286 3.39467 3.43451 3.86541 4.14805 4.31150 4.32447 4.40355 4.41250 4.77347 4.85566 4.87363 4.97742 5.04120 5.11359 5.26403 5.30648 5.32063 5.39167 5.42934 5.48382 5.52219 5.55813 5.58887 5.66476 5.66722 5.79322 5.84897 5.85417 5.94689 5.99852 6.21993 6.27051 6.43208 6.54030 6.57263 6.62395 6.90083 6.94192 7.23084 7.29138 7.35750 7.67481 7.76528 7.96487 8.02972 8.13604 8.49304 9.01333 9.58206 11.06115 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.017002 B = 0.002367 C = 0.002231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1646.498846 B =11826.454832 C =12547.467712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.100 4.100 3 H 0.073 0.927 4 C -0.110 4.110 5 C 0.054 3.946 6 N -0.685 5.685 7 C 0.048 3.952 8 C 0.151 3.849 9 H 0.103 0.897 10 N -0.698 5.698 11 C 0.511 3.489 12 O -0.502 6.502 13 C 0.503 3.497 14 O -0.537 6.537 15 N -0.571 5.571 16 C 0.077 3.923 17 C 0.050 3.950 18 N -0.537 5.537 19 C 0.193 3.807 20 C -0.508 4.508 21 H 0.065 0.935 22 C 0.055 3.945 23 N -0.898 5.898 24 Si 0.898 3.102 25 H -0.271 1.271 26 H -0.285 1.285 27 H -0.284 1.284 28 C 0.042 3.958 29 C 0.114 3.886 30 H 0.059 0.941 31 H 0.060 0.940 32 H 0.058 0.942 33 H 0.073 0.927 34 H 0.076 0.924 35 H 0.030 0.970 36 H 0.078 0.922 37 H 0.348 0.652 38 H 0.033 0.967 39 H 0.082 0.918 40 H 0.411 0.589 41 H 0.076 0.924 42 H 0.131 0.869 43 H 0.023 0.977 44 H 0.099 0.901 45 H -0.009 1.009 46 H 0.032 0.968 47 H 0.261 0.739 48 H 0.027 0.973 49 H 0.083 0.917 50 H 0.090 0.910 51 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.406 10.415 22.468 28.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.119 4.119 3 H 0.092 0.908 4 C -0.148 4.148 5 C -0.076 4.076 6 N -0.317 5.317 7 C -0.083 4.083 8 C 0.046 3.954 9 H 0.121 0.879 10 N -0.351 5.351 11 C 0.293 3.707 12 O -0.378 6.378 13 C 0.285 3.715 14 O -0.415 6.415 15 N -0.303 5.303 16 C -0.045 4.045 17 C -0.079 4.079 18 N -0.262 5.262 19 C 0.068 3.932 20 C -0.546 4.546 21 H 0.083 0.917 22 C -0.146 4.146 23 N -0.538 5.538 24 Si 0.726 3.274 25 H -0.196 1.196 26 H -0.211 1.211 27 H -0.210 1.210 28 C -0.088 4.088 29 C -0.008 4.008 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.077 0.923 33 H 0.091 0.909 34 H 0.095 0.905 35 H 0.049 0.951 36 H 0.096 0.904 37 H 0.166 0.834 38 H 0.051 0.949 39 H 0.101 0.899 40 H 0.247 0.753 41 H 0.094 0.906 42 H 0.148 0.852 43 H 0.041 0.959 44 H 0.117 0.883 45 H 0.009 0.991 46 H 0.050 0.950 47 H 0.070 0.930 48 H 0.045 0.955 49 H 0.102 0.898 50 H 0.108 0.892 51 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 13.226 9.604 22.050 27.448 hybrid contribution -0.218 0.445 -0.011 0.495 sum 13.008 10.049 22.040 27.494 Atomic orbital electron populations 1.21841 0.94068 1.02614 1.02118 1.21465 0.96747 0.99560 0.94150 0.90813 1.21623 0.94787 1.01653 0.96736 1.21990 0.95978 0.96526 0.93076 1.60131 1.19036 1.51224 1.01333 1.22284 0.95358 0.96958 0.93660 1.21092 0.93742 0.97796 0.82773 0.87898 1.45798 1.67232 1.14060 1.08037 1.20311 0.78572 0.87206 0.84644 1.90579 1.48226 1.14753 1.84240 1.19957 0.79737 0.87294 0.84517 1.90718 1.52743 1.13910 1.84165 1.48166 1.65197 1.09002 1.07963 1.23146 0.99146 0.76759 1.05412 1.22471 0.94349 1.01393 0.89649 1.62118 1.45982 1.01475 1.16647 1.19734 0.85271 0.95505 0.92672 1.21187 1.03099 0.94667 1.35695 0.91684 1.25000 0.95045 0.98729 0.95871 1.69971 1.07794 1.36551 1.39463 0.86436 0.78266 0.84681 0.78026 1.19558 1.21124 1.21025 1.22381 0.94759 0.91351 1.00261 1.21943 0.98599 0.96815 0.83462 0.92235 0.92130 0.92270 0.90851 0.90505 0.95129 0.90402 0.83376 0.94861 0.89908 0.75276 0.90558 0.85213 0.95887 0.88322 0.99113 0.95036 0.92956 0.95454 0.89839 0.89193 0.90258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 9.06 37.16 0.34 -0.70 16 2 C -0.10 -0.67 2.35 -90.50 -0.21 -0.88 16 3 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 4 C -0.11 -0.65 5.38 -26.65 -0.14 -0.79 16 5 C 0.05 0.31 6.55 -3.83 -0.03 0.28 16 6 N -0.69 -4.97 6.85 -113.81 -0.78 -5.75 16 7 C 0.05 0.40 6.13 -3.83 -0.02 0.38 16 8 C 0.15 1.33 2.04 -67.85 -0.14 1.19 16 9 H 0.10 1.13 7.58 -51.93 -0.39 0.74 16 10 N -0.70 -6.97 4.44 -54.16 -0.24 -7.21 16 11 C 0.51 6.71 7.71 -11.59 -0.09 6.62 16 12 O -0.50 -7.45 12.86 5.50 0.07 -7.38 16 13 C 0.50 7.53 7.75 -11.59 -0.09 7.44 16 14 O -0.54 -8.61 15.96 5.50 0.09 -8.53 16 15 N -0.57 -9.03 3.00 -172.69 -0.52 -9.55 16 16 C 0.08 1.26 6.14 -3.37 -0.02 1.24 16 17 C 0.05 0.98 5.47 -3.46 -0.02 0.96 16 18 N -0.54 -11.43 4.62 -235.46 -1.09 -12.52 16 19 C 0.19 4.98 4.72 -4.98 -0.02 4.95 16 20 C -0.51 -14.06 8.41 -34.44 -0.29 -14.35 16 21 H 0.06 1.78 7.13 -52.49 -0.37 1.40 16 22 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 23 N -0.90 -26.57 13.29 55.43 0.74 -25.83 16 24 Si 0.90 21.51 29.54 -169.99 -5.02 16.49 16 25 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 26 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 27 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 28 C 0.04 0.75 5.62 -3.70 -0.02 0.73 16 29 C 0.11 1.76 6.61 -3.60 -0.02 1.74 16 30 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.06 0.46 7.64 -51.93 -0.40 0.06 16 33 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 34 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.03 0.17 8.14 -51.93 -0.42 -0.26 16 36 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.35 2.01 8.90 -39.29 -0.35 1.66 16 38 H 0.03 0.26 8.14 -51.92 -0.42 -0.16 16 39 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.41 3.68 8.03 -40.82 -0.33 3.35 16 41 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 42 H 0.13 2.08 4.44 -54.24 -0.24 1.84 16 43 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.10 2.04 6.67 -51.93 -0.35 1.70 16 45 H -0.01 -0.25 8.12 -51.93 -0.42 -0.67 16 46 H 0.03 0.86 7.97 -51.93 -0.41 0.45 16 47 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 48 H 0.03 0.51 8.14 -51.92 -0.42 0.09 16 49 H 0.08 1.43 7.99 -51.93 -0.41 1.02 16 50 H 0.09 1.31 7.05 -51.93 -0.37 0.95 16 51 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 LS Contribution 396.93 15.07 5.98 5.98 Total: -1.00 -31.32 396.93 -10.33 -41.64 By element: Atomic # 1 Polarization: 11.06 SS G_CDS: -8.68 Total: 2.38 kcal Atomic # 6 Polarization: 11.14 SS G_CDS: -0.88 Total: 10.26 kcal Atomic # 7 Polarization: -58.96 SS G_CDS: -1.89 Total: -60.85 kcal Atomic # 8 Polarization: -16.06 SS G_CDS: 0.16 Total: -15.91 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -31.32 -10.33 -41.64 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884720027.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.289 kcal (2) G-P(sol) polarization free energy of solvation -31.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.85 seconds