Wall clock time and date at job start Tue Mar 31 2020 21:51:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.71168 * 2 1 4 4 C 1.52983 * 109.75632 * 239.37180 * 2 1 3 5 5 H 1.08994 * 109.22132 * 166.69862 * 4 2 1 6 6 C 1.53003 * 109.22155 * 47.36288 * 4 2 1 7 7 N 1.45648 * 110.77306 * 287.03034 * 4 2 1 8 8 C 1.33381 * 124.58759 * 338.12090 * 7 4 2 9 9 O 1.21282 * 118.49052 * 184.30158 * 8 7 4 10 10 C 1.50072 * 123.01411 * 4.07611 * 8 7 4 11 11 H 1.08996 * 109.55653 * 227.72843 * 10 8 7 12 12 C 1.53007 * 109.37580 * 107.49387 * 10 8 7 13 13 N 1.47048 * 109.08888 * 347.66935 * 10 8 7 14 14 C 1.34782 * 121.35091 * 222.65081 * 13 10 8 15 15 O 1.21585 * 119.99777 * 179.71524 * 14 13 10 16 16 N 1.34771 * 119.99844 * 359.71500 * 14 13 10 17 17 C 1.46496 * 119.99983 * 180.02562 * 16 14 13 18 18 C 1.53046 * 109.46370 * 154.99917 * 17 16 14 19 19 C 1.53190 * 109.31128 * 181.38251 * 18 17 16 20 20 N 1.46925 * 108.78129 * 305.36370 * 19 18 17 21 21 C 1.36931 * 120.63211 * 233.58876 * 20 19 18 22 22 H 1.08001 * 119.99985 * 25.56646 * 21 20 19 23 23 C 1.38808 * 119.99836 * 205.56754 * 21 20 19 24 24 N 1.31615 * 120.00199 * 31.64086 * 23 21 20 25 25 Si 1.86799 * 119.99949 * 211.36764 * 23 21 20 26 26 H 1.48499 * 109.47271 * 180.27446 * 25 23 21 27 27 H 1.48498 * 109.47361 * 300.27342 * 25 23 21 28 28 H 1.48505 * 109.47243 * 60.27580 * 25 23 21 29 29 C 1.46931 * 118.73505 * 53.86073 * 20 19 18 30 30 C 1.53044 * 109.45951 * 275.06823 * 17 16 14 31 31 H 1.08996 * 109.47401 * 285.75583 * 1 2 3 32 32 H 1.09001 * 109.47243 * 45.76197 * 1 2 3 33 33 H 1.09003 * 109.47081 * 165.75632 * 1 2 3 34 34 H 1.08995 * 109.47200 * 59.99859 * 6 4 2 35 35 H 1.08995 * 109.47198 * 180.02562 * 6 4 2 36 36 H 1.09005 * 109.46513 * 300.00141 * 6 4 2 37 37 H 0.97004 * 117.70896 * 158.10125 * 7 4 2 38 38 H 1.08995 * 109.47625 * 314.95668 * 12 10 8 39 39 H 1.09005 * 109.46769 * 74.95793 * 12 10 8 40 40 H 1.08996 * 109.46794 * 194.95307 * 12 10 8 41 41 H 0.97003 * 120.00046 * 359.97438 * 16 14 13 42 42 H 1.08998 * 109.46290 * 35.02740 * 17 16 14 43 43 H 1.09004 * 109.49401 * 61.43236 * 18 17 16 44 44 H 1.08994 * 109.52057 * 301.35559 * 18 17 16 45 45 H 1.09005 * 109.58342 * 185.57371 * 19 18 17 46 46 H 1.08999 * 109.58801 * 65.15684 * 19 18 17 47 47 H 0.97007 * 120.00024 * 5.47224 * 24 23 21 48 48 H 1.09002 * 109.58494 * 65.92832 * 29 20 19 49 49 H 1.09000 * 109.58333 * 186.35259 * 29 20 19 50 50 H 1.09005 * 109.49526 * 298.56380 * 30 17 16 51 51 H 1.08996 * 109.49648 * 58.62934 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8976 1.0261 0.0000 4 6 2.0471 -0.7335 -1.2389 5 1 3.1110 -0.5293 -1.3588 6 6 1.2964 -0.2290 -2.4730 7 7 1.8463 -2.1703 -1.1099 8 6 1.6885 -2.8117 0.0489 9 8 1.6079 -4.0218 0.0340 10 6 1.6111 -2.1052 1.3706 11 1 2.2725 -2.5948 2.0853 12 6 0.1714 -2.1504 1.8867 13 7 2.0269 -0.7060 1.1930 14 6 2.8346 -0.0961 2.0831 15 8 3.1673 1.0603 1.9093 16 7 3.2734 -0.7682 3.1657 17 6 4.1509 -0.1052 4.1335 18 6 4.0078 -0.7818 5.4988 19 6 4.9006 -0.0642 6.5159 20 7 6.2757 -0.0328 5.9993 21 6 7.3158 -0.5046 6.7547 22 1 7.1364 -1.2512 7.5142 23 6 8.6006 -0.0232 6.5443 24 7 8.7812 1.2174 6.1435 25 14 10.0737 -1.1338 6.8373 26 1 11.3233 -0.3848 6.5495 27 1 10.0810 -1.5834 8.2526 28 1 9.9881 -2.3160 5.9427 29 6 6.5142 0.5200 4.6590 30 6 5.6026 -0.2093 3.6603 31 1 -0.3634 0.2790 0.9890 32 1 -0.3634 0.7169 -0.7363 33 1 -0.3633 -0.9961 -0.2529 34 1 1.4624 0.8422 -2.5865 35 1 1.6614 -0.7495 -3.3583 36 1 0.2300 -0.4207 -2.3530 37 1 1.8257 -2.6977 -1.9238 38 1 -0.5135 -1.9056 1.0749 39 1 -0.0497 -3.1505 2.2595 40 1 0.0519 -1.4272 2.6934 41 1 3.0077 -1.6907 3.3045 42 1 3.8711 0.9449 4.2176 43 1 4.3114 -1.8258 5.4209 44 1 2.9691 -0.7283 5.8247 45 1 4.8787 -0.6012 7.4643 46 1 4.5419 0.9547 6.6623 47 1 8.0236 1.8190 6.0715 48 1 6.2844 1.5855 4.6569 49 1 7.5574 0.3685 4.3817 50 1 5.8912 -1.2587 3.5999 51 1 5.6988 0.2517 2.6774 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000917306993.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:51:56 Heat of formation + Delta-G solvation = -30.810151 kcal Electronic energy + Delta-G solvation = -31463.822825 eV Core-core repulsion = 27399.128768 eV Total energy + Delta-G solvation = -4064.694057 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.59182 -39.67171 -38.01714 -37.20886 -35.51434 -34.61005 -32.68959 -32.07088 -30.88677 -30.15419 -29.56495 -28.84614 -25.48386 -24.99521 -24.49059 -22.46434 -22.24975 -21.83580 -20.68133 -19.65943 -18.85240 -18.42979 -17.73849 -17.32082 -16.83606 -16.13405 -15.59768 -15.58246 -15.03216 -14.78250 -14.26831 -14.24205 -14.09923 -13.77407 -13.50691 -13.45926 -13.30633 -13.25143 -12.97886 -12.84823 -12.78241 -12.71765 -12.36720 -12.31604 -11.79698 -11.67772 -11.61642 -11.32252 -11.09632 -10.77355 -10.67830 -10.55901 -10.42436 -10.23588 -10.06633 -9.97601 -9.93153 -9.55709 -9.37919 -9.08261 -8.66640 -8.28745 -6.91731 -6.11143 -3.16888 2.17055 2.24881 2.82106 3.14585 3.51073 3.55515 3.70226 3.73300 3.93893 4.11615 4.41618 4.46876 4.61129 4.61521 4.62369 4.84466 4.92918 5.07994 5.16287 5.19531 5.22429 5.25437 5.33912 5.40335 5.41526 5.48083 5.52346 5.56651 5.70476 5.73399 5.78212 5.94522 5.99980 6.12747 6.22185 6.25873 6.34722 6.43752 6.53040 6.61604 6.70930 6.78300 6.86082 6.87646 7.07952 7.20989 7.73432 7.87780 8.02000 8.54247 8.57334 9.11430 9.85833 10.30666 11.19180 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.018720 B = 0.002694 C = 0.002686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1495.390065 B =10391.702692 C =10423.211017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.145 3.855 3 H 0.122 0.878 4 C 0.125 3.875 5 H 0.082 0.918 6 C -0.165 4.165 7 N -0.709 5.709 8 C 0.521 3.479 9 O -0.545 6.545 10 C 0.128 3.872 11 H 0.116 0.884 12 C -0.165 4.165 13 N -0.631 5.631 14 C 0.712 3.288 15 O -0.580 6.580 16 N -0.737 5.737 17 C 0.168 3.832 18 C -0.139 4.139 19 C 0.151 3.849 20 N -0.598 5.598 21 C -0.358 4.358 22 H 0.057 0.943 23 C -0.020 4.020 24 N -0.905 5.905 25 Si 1.057 2.943 26 H -0.286 1.286 27 H -0.293 1.293 28 H -0.294 1.294 29 C 0.155 3.845 30 C -0.142 4.142 31 H 0.068 0.932 32 H 0.073 0.927 33 H 0.063 0.937 34 H 0.078 0.922 35 H 0.065 0.935 36 H 0.069 0.931 37 H 0.399 0.601 38 H 0.073 0.927 39 H 0.076 0.924 40 H 0.076 0.924 41 H 0.390 0.610 42 H 0.083 0.917 43 H 0.064 0.936 44 H 0.057 0.943 45 H 0.060 0.940 46 H 0.018 0.982 47 H 0.269 0.731 48 H 0.019 0.981 49 H 0.080 0.920 50 H 0.058 0.942 51 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.337 -4.179 -15.771 26.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.041 3.959 3 H 0.139 0.861 4 C 0.019 3.981 5 H 0.100 0.900 6 C -0.223 4.223 7 N -0.361 5.361 8 C 0.306 3.694 9 O -0.422 6.422 10 C 0.020 3.980 11 H 0.133 0.867 12 C -0.223 4.223 13 N -0.371 5.371 14 C 0.414 3.586 15 O -0.457 6.457 16 N -0.391 5.391 17 C 0.065 3.935 18 C -0.179 4.179 19 C 0.024 3.976 20 N -0.322 5.322 21 C -0.487 4.487 22 H 0.075 0.925 23 C -0.223 4.223 24 N -0.544 5.544 25 Si 0.886 3.114 26 H -0.212 1.212 27 H -0.220 1.220 28 H -0.221 1.221 29 C 0.029 3.971 30 C -0.182 4.182 31 H 0.087 0.913 32 H 0.092 0.908 33 H 0.082 0.918 34 H 0.097 0.903 35 H 0.084 0.916 36 H 0.088 0.912 37 H 0.235 0.765 38 H 0.092 0.908 39 H 0.095 0.905 40 H 0.095 0.905 41 H 0.225 0.775 42 H 0.101 0.899 43 H 0.083 0.917 44 H 0.075 0.925 45 H 0.078 0.922 46 H 0.036 0.964 47 H 0.080 0.920 48 H 0.037 0.963 49 H 0.098 0.902 50 H 0.076 0.924 51 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -18.394 -3.885 -15.719 24.506 hybrid contribution -1.801 -0.646 -0.182 1.922 sum -20.195 -4.530 -15.902 26.101 Atomic orbital electron populations 1.22470 0.94342 1.02412 1.03236 1.21385 0.94473 0.98116 0.81926 0.86064 1.21423 1.00829 0.79779 0.96038 0.90020 1.22217 1.01188 1.02583 0.96293 1.45530 1.73003 1.08798 1.08788 1.20070 0.75556 0.87617 0.86131 1.90804 1.50541 1.13708 1.87176 1.21222 0.99317 0.82266 0.95193 0.86683 1.22422 0.93569 1.03789 1.02520 1.47634 1.52372 1.11766 1.25293 1.15796 0.78329 0.84637 0.79822 1.90933 1.62189 1.15759 1.76825 1.45678 1.53190 1.15954 1.24314 1.20917 0.89119 0.97019 0.86467 1.22342 0.99696 1.00780 0.95074 1.20813 0.85605 0.96646 0.94499 1.44202 1.02075 1.73199 1.12727 1.19903 0.88595 1.19869 1.20324 0.92517 1.25752 0.99281 0.97363 0.99933 1.70786 1.34135 1.02860 1.46602 0.83654 0.76397 0.75376 0.75939 1.21150 1.21980 1.22101 1.20979 0.98592 0.93913 0.83648 1.22528 0.94652 1.01514 0.99540 0.91268 0.90845 0.91831 0.90275 0.91611 0.91197 0.76465 0.90792 0.90471 0.90535 0.77487 0.89934 0.91746 0.92462 0.92157 0.96377 0.92045 0.96264 0.90183 0.92367 0.92639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.04 6.39 37.16 0.24 -0.80 16 2 C 0.15 1.23 2.93 -67.52 -0.20 1.03 16 3 H 0.12 1.19 7.06 -51.93 -0.37 0.82 16 4 C 0.13 0.87 3.54 -68.40 -0.24 0.63 16 5 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 6 C -0.16 -0.68 8.71 37.16 0.32 -0.36 16 7 N -0.71 -5.72 4.88 -54.92 -0.27 -5.99 16 8 C 0.52 5.54 6.52 -11.91 -0.08 5.46 16 9 O -0.55 -7.62 17.80 5.56 0.10 -7.52 16 10 C 0.13 1.22 2.87 -69.08 -0.20 1.02 16 11 H 0.12 1.12 5.96 -51.93 -0.31 0.81 16 12 C -0.16 -1.25 8.30 37.16 0.31 -0.94 16 13 N -0.63 -6.73 2.49 -164.92 -0.41 -7.14 16 14 C 0.71 10.30 8.30 -86.92 -0.72 9.57 16 15 O -0.58 -10.53 15.49 5.29 0.08 -10.45 16 16 N -0.74 -10.29 4.98 -58.63 -0.29 -10.58 16 17 C 0.17 2.87 2.41 -67.89 -0.16 2.71 16 18 C -0.14 -2.28 5.55 -26.61 -0.15 -2.43 16 19 C 0.15 3.10 6.51 -3.71 -0.02 3.08 16 20 N -0.60 -14.86 2.86 -172.05 -0.49 -15.35 16 21 C -0.36 -9.95 9.44 -15.06 -0.14 -10.09 16 22 H 0.06 1.58 7.98 -52.49 -0.42 1.16 16 23 C -0.02 -0.57 4.50 -17.43 -0.08 -0.65 16 24 N -0.91 -27.18 12.45 55.49 0.69 -26.49 16 25 Si 1.06 25.24 30.02 -169.99 -5.10 20.14 16 26 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 27 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 28 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 29 C 0.16 3.70 4.87 -3.48 -0.02 3.68 16 30 C -0.14 -2.80 5.67 -26.38 -0.15 -2.95 16 31 H 0.07 0.49 7.69 -51.93 -0.40 0.09 16 32 H 0.07 0.34 7.31 -51.93 -0.38 -0.04 16 33 H 0.06 0.39 5.26 -51.93 -0.27 0.11 16 34 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 35 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 36 H 0.07 0.26 6.58 -51.93 -0.34 -0.08 16 37 H 0.40 2.76 8.61 -40.82 -0.35 2.41 16 38 H 0.07 0.51 4.94 -51.93 -0.26 0.25 16 39 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 41 H 0.39 4.56 6.24 -40.82 -0.25 4.30 16 42 H 0.08 1.57 7.58 -51.93 -0.39 1.17 16 43 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 44 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 45 H 0.06 1.22 7.92 -51.93 -0.41 0.81 16 46 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 47 H 0.27 8.19 7.25 -40.82 -0.30 7.89 16 48 H 0.02 0.47 8.02 -51.93 -0.42 0.06 16 49 H 0.08 2.14 6.33 -51.93 -0.33 1.81 16 50 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 51 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 LS Contribution 384.97 15.07 5.80 5.80 Total: -1.00 -34.29 384.97 -9.41 -43.69 By element: Atomic # 1 Polarization: 13.15 SS G_CDS: -8.22 Total: 4.93 kcal Atomic # 6 Polarization: 10.24 SS G_CDS: -1.29 Total: 8.95 kcal Atomic # 7 Polarization: -64.77 SS G_CDS: -0.77 Total: -65.55 kcal Atomic # 8 Polarization: -18.15 SS G_CDS: 0.18 Total: -17.97 kcal Atomic # 14 Polarization: 25.24 SS G_CDS: -5.10 Total: 20.14 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -34.29 -9.41 -43.69 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000917306993.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.882 kcal (2) G-P(sol) polarization free energy of solvation -34.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds