Wall clock time and date at job start Tue Mar 31 2020 21:51:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.71168 * 2 1 4 4 C 1.52983 * 109.75632 * 239.37180 * 2 1 3 5 5 H 1.08994 * 109.22132 * 166.69862 * 4 2 1 6 6 C 1.53003 * 109.22155 * 47.36288 * 4 2 1 7 7 N 1.45648 * 110.77306 * 287.03034 * 4 2 1 8 8 C 1.33381 * 124.58759 * 338.12090 * 7 4 2 9 9 O 1.21282 * 118.49052 * 184.30158 * 8 7 4 10 10 C 1.50072 * 123.01411 * 4.07611 * 8 7 4 11 11 H 1.08996 * 109.55653 * 227.72843 * 10 8 7 12 12 C 1.53007 * 109.37580 * 107.49387 * 10 8 7 13 13 N 1.47048 * 109.08888 * 347.66935 * 10 8 7 14 14 C 1.34782 * 121.35091 * 222.65081 * 13 10 8 15 15 O 1.21585 * 119.99777 * 179.71524 * 14 13 10 16 16 N 1.34771 * 119.99844 * 359.71500 * 14 13 10 17 17 C 1.46496 * 119.99983 * 180.02562 * 16 14 13 18 18 C 1.53046 * 109.46370 * 154.99917 * 17 16 14 19 19 C 1.53190 * 109.31128 * 181.38251 * 18 17 16 20 20 N 1.46925 * 108.78129 * 305.36370 * 19 18 17 21 21 C 1.36931 * 120.63211 * 233.58876 * 20 19 18 22 22 H 1.08001 * 119.99985 * 25.56646 * 21 20 19 23 23 C 1.38808 * 119.99836 * 205.56754 * 21 20 19 24 24 N 1.31615 * 120.00199 * 31.64086 * 23 21 20 25 25 Si 1.86799 * 119.99949 * 211.36764 * 23 21 20 26 26 H 1.48499 * 109.47271 * 180.27446 * 25 23 21 27 27 H 1.48498 * 109.47361 * 300.27342 * 25 23 21 28 28 H 1.48505 * 109.47243 * 60.27580 * 25 23 21 29 29 C 1.46931 * 118.73505 * 53.86073 * 20 19 18 30 30 C 1.53044 * 109.45951 * 275.06823 * 17 16 14 31 31 H 1.08996 * 109.47401 * 285.75583 * 1 2 3 32 32 H 1.09001 * 109.47243 * 45.76197 * 1 2 3 33 33 H 1.09003 * 109.47081 * 165.75632 * 1 2 3 34 34 H 1.08995 * 109.47200 * 59.99859 * 6 4 2 35 35 H 1.08995 * 109.47198 * 180.02562 * 6 4 2 36 36 H 1.09005 * 109.46513 * 300.00141 * 6 4 2 37 37 H 0.97004 * 117.70896 * 158.10125 * 7 4 2 38 38 H 1.08995 * 109.47625 * 314.95668 * 12 10 8 39 39 H 1.09005 * 109.46769 * 74.95793 * 12 10 8 40 40 H 1.08996 * 109.46794 * 194.95307 * 12 10 8 41 41 H 0.97003 * 120.00046 * 359.97438 * 16 14 13 42 42 H 1.08998 * 109.46290 * 35.02740 * 17 16 14 43 43 H 1.09004 * 109.49401 * 61.43236 * 18 17 16 44 44 H 1.08994 * 109.52057 * 301.35559 * 18 17 16 45 45 H 1.09005 * 109.58342 * 185.57371 * 19 18 17 46 46 H 1.08999 * 109.58801 * 65.15684 * 19 18 17 47 47 H 0.97007 * 120.00024 * 5.47224 * 24 23 21 48 48 H 1.09002 * 109.58494 * 65.92832 * 29 20 19 49 49 H 1.09000 * 109.58333 * 186.35259 * 29 20 19 50 50 H 1.09005 * 109.49526 * 298.56380 * 30 17 16 51 51 H 1.08996 * 109.49648 * 58.62934 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8976 1.0261 0.0000 4 6 2.0471 -0.7335 -1.2389 5 1 3.1110 -0.5293 -1.3588 6 6 1.2964 -0.2290 -2.4730 7 7 1.8463 -2.1703 -1.1099 8 6 1.6885 -2.8117 0.0489 9 8 1.6079 -4.0218 0.0340 10 6 1.6111 -2.1052 1.3706 11 1 2.2725 -2.5948 2.0853 12 6 0.1714 -2.1504 1.8867 13 7 2.0269 -0.7060 1.1930 14 6 2.8346 -0.0961 2.0831 15 8 3.1673 1.0603 1.9093 16 7 3.2734 -0.7682 3.1657 17 6 4.1509 -0.1052 4.1335 18 6 4.0078 -0.7818 5.4988 19 6 4.9006 -0.0642 6.5159 20 7 6.2757 -0.0328 5.9993 21 6 7.3158 -0.5046 6.7547 22 1 7.1364 -1.2512 7.5142 23 6 8.6006 -0.0232 6.5443 24 7 8.7812 1.2174 6.1435 25 14 10.0737 -1.1338 6.8373 26 1 11.3233 -0.3848 6.5495 27 1 10.0810 -1.5834 8.2526 28 1 9.9881 -2.3160 5.9427 29 6 6.5142 0.5200 4.6590 30 6 5.6026 -0.2093 3.6603 31 1 -0.3634 0.2790 0.9890 32 1 -0.3634 0.7169 -0.7363 33 1 -0.3633 -0.9961 -0.2529 34 1 1.4624 0.8422 -2.5865 35 1 1.6614 -0.7495 -3.3583 36 1 0.2300 -0.4207 -2.3530 37 1 1.8257 -2.6977 -1.9238 38 1 -0.5135 -1.9056 1.0749 39 1 -0.0497 -3.1505 2.2595 40 1 0.0519 -1.4272 2.6934 41 1 3.0077 -1.6907 3.3045 42 1 3.8711 0.9449 4.2176 43 1 4.3114 -1.8258 5.4209 44 1 2.9691 -0.7283 5.8247 45 1 4.8787 -0.6012 7.4643 46 1 4.5419 0.9547 6.6623 47 1 8.0236 1.8190 6.0715 48 1 6.2844 1.5855 4.6569 49 1 7.5574 0.3685 4.3817 50 1 5.8912 -1.2587 3.5999 51 1 5.6988 0.2517 2.6774 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000917306993.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:51:54 Heat of formation + Delta-G solvation = -55.070602 kcal Electronic energy + Delta-G solvation = -31464.874837 eV Core-core repulsion = 27399.128768 eV Total energy + Delta-G solvation = -4065.746070 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.45393 -40.80356 -39.35952 -38.31624 -36.42726 -36.13901 -34.02876 -33.18783 -32.00025 -31.64402 -30.90760 -29.68075 -26.88003 -25.85779 -25.54829 -24.09868 -23.73131 -22.72497 -21.82159 -21.21844 -19.82176 -19.51706 -19.21129 -18.54796 -17.65352 -17.05763 -16.68718 -16.57261 -16.31073 -16.05770 -15.77877 -15.55592 -15.36361 -15.16889 -15.01196 -14.65905 -14.46675 -14.07395 -14.03540 -13.85630 -13.56801 -13.47088 -13.35410 -13.26607 -12.95597 -12.90664 -12.58196 -12.46846 -12.30622 -12.24691 -12.10642 -11.97546 -11.83425 -11.74636 -11.67762 -11.64743 -11.31356 -11.05865 -10.42809 -10.32672 -10.21427 -9.70878 -8.98267 -8.31494 -5.35056 1.28948 1.35294 1.58515 1.65709 1.84781 1.95381 2.14295 2.64406 2.65838 3.15906 3.20338 3.47904 3.53039 3.67493 3.79705 3.89566 3.91805 3.97115 4.02606 4.22107 4.28057 4.31159 4.39226 4.47830 4.57896 4.61922 4.64308 4.67258 4.74249 4.84191 4.87346 4.92790 4.95834 4.98386 5.00479 5.09255 5.13572 5.14804 5.18028 5.26851 5.36861 5.39421 5.46147 5.67265 5.74272 5.85868 6.12120 6.35466 6.76108 6.99907 7.02831 7.41598 7.77093 8.22424 8.96164 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.018720 B = 0.002694 C = 0.002686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1495.390065 B =10391.702692 C =10423.211017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.137 3.863 3 H 0.107 0.893 4 C 0.128 3.872 5 H 0.070 0.930 6 C -0.158 4.158 7 N -0.698 5.698 8 C 0.520 3.480 9 O -0.582 6.582 10 C 0.126 3.874 11 H 0.115 0.885 12 C -0.158 4.158 13 N -0.622 5.622 14 C 0.711 3.289 15 O -0.620 6.620 16 N -0.727 5.727 17 C 0.182 3.818 18 C -0.122 4.122 19 C 0.144 3.856 20 N -0.615 5.615 21 C -0.361 4.361 22 H 0.056 0.944 23 C -0.074 4.074 24 N -0.934 5.934 25 Si 1.108 2.892 26 H -0.294 1.294 27 H -0.273 1.273 28 H -0.281 1.281 29 C 0.164 3.836 30 C -0.126 4.126 31 H 0.062 0.938 32 H 0.095 0.905 33 H 0.069 0.931 34 H 0.087 0.913 35 H 0.076 0.924 36 H 0.080 0.920 37 H 0.407 0.593 38 H 0.082 0.918 39 H 0.083 0.917 40 H 0.080 0.920 41 H 0.405 0.595 42 H 0.064 0.936 43 H 0.070 0.930 44 H 0.094 0.906 45 H 0.063 0.937 46 H 0.016 0.984 47 H 0.252 0.748 48 H 0.000 1.000 49 H 0.044 0.956 50 H 0.058 0.942 51 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.573 -5.772 -16.680 28.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.034 3.966 3 H 0.125 0.875 4 C 0.022 3.978 5 H 0.088 0.912 6 C -0.216 4.216 7 N -0.349 5.349 8 C 0.306 3.694 9 O -0.462 6.462 10 C 0.019 3.981 11 H 0.132 0.868 12 C -0.216 4.216 13 N -0.360 5.360 14 C 0.412 3.588 15 O -0.501 6.501 16 N -0.383 5.383 17 C 0.077 3.923 18 C -0.161 4.161 19 C 0.019 3.981 20 N -0.340 5.340 21 C -0.491 4.491 22 H 0.074 0.926 23 C -0.271 4.271 24 N -0.575 5.575 25 Si 0.933 3.067 26 H -0.221 1.221 27 H -0.199 1.199 28 H -0.208 1.208 29 C 0.037 3.963 30 C -0.167 4.167 31 H 0.081 0.919 32 H 0.114 0.886 33 H 0.087 0.913 34 H 0.106 0.894 35 H 0.095 0.905 36 H 0.099 0.901 37 H 0.244 0.756 38 H 0.101 0.899 39 H 0.101 0.899 40 H 0.098 0.902 41 H 0.242 0.758 42 H 0.082 0.918 43 H 0.089 0.911 44 H 0.113 0.887 45 H 0.082 0.918 46 H 0.034 0.966 47 H 0.061 0.939 48 H 0.018 0.982 49 H 0.063 0.937 50 H 0.076 0.924 51 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -20.707 -5.508 -16.668 27.147 hybrid contribution -1.162 -0.099 0.057 1.167 sum -21.868 -5.607 -16.612 28.029 Atomic orbital electron populations 1.22419 0.92149 1.03389 1.03679 1.21632 0.96134 0.97380 0.81453 0.87497 1.21462 1.00646 0.78925 0.96743 0.91233 1.22192 1.01320 1.03128 0.94911 1.45517 1.71540 1.09325 1.08544 1.20192 0.75210 0.87169 0.86869 1.90793 1.52591 1.15123 1.87685 1.21352 1.00717 0.81112 0.94953 0.86756 1.22390 0.92040 1.04308 1.02879 1.47620 1.51167 1.12234 1.24988 1.15905 0.78520 0.84191 0.80151 1.90914 1.63715 1.17657 1.77776 1.45315 1.52594 1.16496 1.23847 1.20514 0.87675 0.96578 0.87548 1.22133 1.00758 1.00082 0.93135 1.21012 0.84041 0.97154 0.95918 1.44430 1.03334 1.73287 1.12944 1.20175 0.89612 1.19148 1.20116 0.92588 1.27101 1.02300 0.97703 0.99988 1.70915 1.33251 1.03830 1.49512 0.82955 0.72871 0.73825 0.77051 1.22052 1.19870 1.20777 1.20746 0.97481 0.93403 0.84648 1.22302 0.95908 1.00514 0.97941 0.91856 0.88649 0.91268 0.89374 0.90518 0.90142 0.75594 0.89883 0.89854 0.90154 0.75753 0.91752 0.91101 0.88732 0.91831 0.96623 0.93897 0.98154 0.93746 0.92357 0.93191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.56 6.39 71.98 0.46 -1.10 16 2 C 0.14 2.11 2.93 44.84 0.13 2.24 16 3 H 0.11 2.02 7.06 -2.39 -0.02 2.01 16 4 C 0.13 1.56 3.54 45.15 0.16 1.72 16 5 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 6 C -0.16 -0.87 8.71 71.98 0.63 -0.24 16 7 N -0.70 -9.98 4.88 -446.83 -2.18 -12.17 16 8 C 0.52 10.19 6.52 87.68 0.57 10.77 16 9 O -0.58 -15.53 17.80 -3.04 -0.05 -15.59 16 10 C 0.13 2.17 2.87 43.95 0.13 2.30 16 11 H 0.11 2.00 5.96 -2.39 -0.01 1.98 16 12 C -0.16 -2.00 8.30 71.98 0.60 -1.40 16 13 N -0.62 -12.39 2.49 -793.94 -1.98 -14.37 16 14 C 0.71 19.93 8.30 179.05 1.49 21.41 16 15 O -0.62 -22.61 15.49 -3.98 -0.06 -22.67 16 16 N -0.73 -19.22 4.98 -457.69 -2.28 -21.50 16 17 C 0.18 6.06 2.41 45.02 0.11 6.17 16 18 C -0.12 -3.74 5.55 30.67 0.17 -3.57 16 19 C 0.14 5.82 6.51 86.36 0.56 6.38 16 20 N -0.62 -31.01 2.86 -698.25 -2.00 -33.01 16 21 C -0.36 -20.25 9.44 84.03 0.79 -19.46 16 22 H 0.06 3.10 7.98 -2.91 -0.02 3.08 16 23 C -0.07 -4.25 4.50 84.86 0.38 -3.87 16 24 N -0.93 -58.08 12.45 21.65 0.27 -57.81 16 25 Si 1.11 51.38 30.02 68.60 2.06 53.44 16 26 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 27 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 28 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 29 C 0.16 8.11 4.87 86.51 0.42 8.53 16 30 C -0.13 -5.04 5.67 30.82 0.17 -4.87 16 31 H 0.06 0.74 7.69 -2.39 -0.02 0.72 16 32 H 0.09 0.56 7.31 -2.39 -0.02 0.54 16 33 H 0.07 0.62 5.26 -2.39 -0.01 0.61 16 34 H 0.09 0.39 8.14 -2.39 -0.02 0.37 16 35 H 0.08 0.31 8.14 -2.39 -0.02 0.29 16 36 H 0.08 0.32 6.58 -2.38 -0.02 0.30 16 37 H 0.41 4.82 8.61 -92.71 -0.80 4.03 16 38 H 0.08 0.91 4.94 -2.39 -0.01 0.90 16 39 H 0.08 1.00 8.14 -2.38 -0.02 0.98 16 40 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 41 H 0.40 8.49 6.24 -92.71 -0.58 7.91 16 42 H 0.06 2.44 7.58 -2.39 -0.02 2.42 16 43 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 44 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 45 H 0.06 2.50 7.92 -2.38 -0.02 2.48 16 46 H 0.02 0.64 8.14 -2.39 -0.02 0.63 16 47 H 0.25 16.10 7.25 -92.70 -0.67 15.42 16 48 H 0.00 0.03 8.02 -2.39 -0.02 0.01 16 49 H 0.04 2.49 6.33 -2.39 -0.02 2.47 16 50 H 0.06 2.32 8.14 -2.38 -0.02 2.30 16 51 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 Total: -1.00 -76.95 384.97 0.22 -76.73 By element: Atomic # 1 Polarization: 22.25 SS G_CDS: -0.32 Total: 21.93 kcal Atomic # 6 Polarization: 18.24 SS G_CDS: 6.77 Total: 25.01 kcal Atomic # 7 Polarization: -130.69 SS G_CDS: -8.17 Total: -138.86 kcal Atomic # 8 Polarization: -38.14 SS G_CDS: -0.12 Total: -38.25 kcal Atomic # 14 Polarization: 51.38 SS G_CDS: 2.06 Total: 53.44 kcal Total: -76.95 0.22 -76.73 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000917306993.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.663 kcal (2) G-P(sol) polarization free energy of solvation -76.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds